Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group1_versus_Group2.GMP.neu_Pheno.cls #Group1_versus_Group2_repos
Phenotype	GMP.neu_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.21165428
Normalized Enrichment Score (NES)	0.8427846
Nominal p-value	0.84659094
FDR q-value	0.8727408
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Matn2	161	0.832	0.0140	Yes
2	Bmp1	198	0.797	0.0333	Yes
3	Cdh11	214	0.788	0.0535	Yes
4	Cadm1	270	0.756	0.0708	Yes
5	Pfn2	284	0.743	0.0898	Yes
6	Gem	578	0.629	0.0918	Yes
7	Serpine2	684	0.603	0.1025	Yes
8	Il15	901	0.552	0.1063	Yes
9	Pmepa1	1003	0.534	0.1154	Yes
10	Loxl1	1144	0.513	0.1220	Yes
11	Tgm2	1166	0.508	0.1344	Yes
12	Lama1	1232	0.501	0.1444	Yes
13	Lamc1	1442	0.475	0.1465	Yes
14	Nt5e	1682	0.445	0.1463	Yes
15	Sgcd	1716	0.441	0.1563	Yes
16	Mmp14	1747	0.436	0.1664	Yes
17	Col5a1	1769	0.433	0.1769	Yes
18	Efemp2	1825	0.428	0.1854	Yes
19	Col1a2	2069	0.406	0.1840	Yes
20	Eno2	2349	0.383	0.1801	Yes
21	Thbs1	2518	0.370	0.1815	Yes
22	Col4a2	2529	0.370	0.1908	Yes
23	Col16a1	2614	0.364	0.1963	Yes
24	Jun	2952	0.337	0.1883	Yes
25	Gpc1	3012	0.333	0.1941	Yes
26	Fstl1	3013	0.333	0.2029	Yes
27	Cd44	3267	0.315	0.1986	Yes
28	Capg	3312	0.312	0.2047	Yes
29	Sntb1	3338	0.310	0.2117	Yes
30	Plod2	3972	0.268	0.1869	No
31	Mest	4237	0.254	0.1804	No
32	Sgcb	4305	0.250	0.1837	No
33	Tgfbi	4338	0.248	0.1886	No
34	Col7a1	4340	0.248	0.1952	No
35	Fbln1	4971	0.218	0.1693	No
36	Plod1	5046	0.214	0.1712	No
37	Tnc	5252	0.205	0.1664	No
38	Timp3	5321	0.201	0.1683	No
39	Htra1	5549	0.189	0.1619	No
40	Gm21451	5627	0.184	0.1629	No
41	Tgfbr3	5826	0.174	0.1576	No
42	Lama2	6150	0.160	0.1456	No
43	Pcolce	6331	0.153	0.1406	No
44	Plaur	6354	0.151	0.1435	No
45	Itga5	6430	0.148	0.1436	No
46	Glipr1	6461	0.147	0.1460	No
47	Col5a2	6524	0.144	0.1467	No
48	Fgf2	6559	0.143	0.1488	No
49	Col5a3	6649	0.140	0.1480	No
50	Pdlim4	6914	0.128	0.1382	No
51	Vcan	7078	0.121	0.1332	No
52	Tpm1	7382	0.108	0.1208	No
53	Abi3bp	7503	0.103	0.1175	No
54	Vegfc	8147	0.077	0.0872	No
55	Itga2	8329	0.070	0.0800	No
56	Cald1	8507	0.064	0.0728	No
57	Col12a1	9083	0.042	0.0450	No
58	Itgb5	9142	0.040	0.0431	No
59	Tnfrsf12a	9359	0.031	0.0331	No
60	Itgb3	9691	0.020	0.0170	No
61	Pdgfrb	9848	0.013	0.0095	No
62	Fuca1	9915	0.011	0.0065	No
63	Dst	9987	0.009	0.0031	No
64	Qsox1	10059	0.007	-0.0003	No
65	Sparc	10257	0.000	-0.0102	No
66	Col11a1	10259	0.000	-0.0102	No
67	Myl9	10269	0.000	-0.0107	No
68	Dcn	10628	-0.011	-0.0284	No
69	Mcm7	10695	-0.014	-0.0313	No
70	Colgalt1	11101	-0.028	-0.0510	No
71	Itgav	11304	-0.036	-0.0602	No
72	Notch2	11441	-0.040	-0.0660	No
73	Pcolce2	11526	-0.042	-0.0690	No
74	Fbn1	11662	-0.048	-0.0746	No
75	Fstl3	11706	-0.049	-0.0754	No
76	Tpm2	11784	-0.053	-0.0779	No
77	Cdh2	11885	-0.056	-0.0814	No
78	Fas	12039	-0.061	-0.0875	No
79	Slit2	12044	-0.061	-0.0861	No
80	Fzd8	12679	-0.085	-0.1157	No
81	Flna	12834	-0.091	-0.1211	No
82	Mylk	13373	-0.110	-0.1452	No
83	Fbln5	13381	-0.110	-0.1427	No
84	Vegfa	13536	-0.114	-0.1474	No
85	Itgb1	13693	-0.121	-0.1520	No
86	Tgfb1	13958	-0.131	-0.1618	No
87	Edil3	13977	-0.131	-0.1592	No
88	Ntm	14195	-0.140	-0.1664	No
89	Fbn2	14295	-0.144	-0.1676	No
90	Col4a1	14570	-0.155	-0.1772	No
91	Fn1	14590	-0.156	-0.1741	No
92	Slc6a8	14740	-0.162	-0.1772	No
93	Calu	14862	-0.168	-0.1789	No
94	Id2	14882	-0.169	-0.1753	No
95	Copa	14886	-0.169	-0.1710	No
96	Ecm2	15192	-0.181	-0.1816	No
97	Gadd45a	15311	-0.187	-0.1825	No
98	Comp	15360	-0.189	-0.1799	No
99	P3h1	15578	-0.196	-0.1857	No
100	Rhob	15671	-0.200	-0.1850	No
101	Vcam1	15709	-0.202	-0.1815	No
102	Col1a1	15798	-0.206	-0.1804	No
103	Cap2	15924	-0.211	-0.1811	No
104	Mmp2	15969	-0.213	-0.1777	No
105	Lama3	16007	-0.215	-0.1739	No
106	Slit3	16008	-0.215	-0.1681	No
107	Basp1	16171	-0.223	-0.1704	No
108	Plod3	16574	-0.243	-0.1842	No
109	Sat1	16632	-0.245	-0.1805	No
110	Vim	16633	-0.246	-0.1740	No
111	Inhba	16638	-0.246	-0.1677	No
112	Emp3	16672	-0.248	-0.1627	No
113	Anpep	16712	-0.251	-0.1581	No
114	Magee1	16976	-0.266	-0.1642	No
115	Wipf1	17000	-0.267	-0.1583	No
116	Lgals1	17025	-0.268	-0.1524	No
117	Cdh6	17029	-0.268	-0.1454	No
118	Tagln	17300	-0.283	-0.1515	No
119	Dpysl3	17302	-0.283	-0.1440	No
120	Tnfaip3	17506	-0.296	-0.1464	No
121	Spp1	17841	-0.320	-0.1547	No
122	Sdc1	18006	-0.331	-0.1542	No
123	Gadd45b	18116	-0.339	-0.1507	No
124	Thbs2	18201	-0.345	-0.1457	No
125	Igfbp4	18204	-0.346	-0.1367	No
126	Bgn	18365	-0.360	-0.1352	No
127	Sfrp4	18460	-0.370	-0.1301	No
128	Fbln2	18678	-0.391	-0.1306	No
129	Pvr	18809	-0.405	-0.1264	No
130	Lrp1	18823	-0.407	-0.1163	No
131	Nid2	18837	-0.408	-0.1061	No
132	Dab2	19159	-0.444	-0.1105	No
133	Tfpi2	19200	-0.450	-0.1005	No
134	Thy1	19374	-0.480	-0.0965	No
135	Spock1	19537	-0.520	-0.0908	No
136	Adam12	19610	-0.540	-0.0801	No
137	Ppib	19711	-0.570	-0.0700	No
138	Gja1	19724	-0.574	-0.0554	No
139	Postn	19731	-0.576	-0.0404	No
140	Tpm4	19752	-0.581	-0.0260	No
141	Ecm1	19950	-0.746	-0.0161	No
142	Fap	19952	-0.748	0.0037	No