Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.mono_Pheno.cls #Group6_versus_Group8.GMP.mono_Pheno.cls #Group6_versus_Group8_repos
Phenotype	GMP.mono_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.24846756
Normalized Enrichment Score (NES)	1.0348043
Nominal p-value	0.37904763
FDR q-value	0.5839595
FWER p-Value	0.997

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ecm2	80	1.043	0.0212	Yes
2	Tgfbi	113	0.993	0.0432	Yes
3	Col5a2	247	0.842	0.0574	Yes
4	Eln	388	0.742	0.0689	Yes
5	Mest	677	0.652	0.0720	Yes
6	Sfrp1	728	0.627	0.0847	Yes
7	Tnfaip3	885	0.582	0.0917	Yes
8	Plaur	1171	0.548	0.0925	Yes
9	Cap2	1350	0.527	0.0974	Yes
10	Fermt2	1614	0.486	0.0976	Yes
11	Vcan	1615	0.485	0.1090	Yes
12	Fas	1706	0.468	0.1162	Yes
13	Tnfrsf12a	1857	0.444	0.1203	Yes
14	Gem	2047	0.423	0.1222	Yes
15	Sntb1	2125	0.410	0.1286	Yes
16	Acta2	2454	0.396	0.1239	Yes
17	Lrp1	2525	0.390	0.1302	Yes
18	Timp1	2608	0.382	0.1357	Yes
19	Matn2	2670	0.381	0.1420	Yes
20	Bgn	2705	0.380	0.1496	Yes
21	Wipf1	2813	0.374	0.1538	Yes
22	Htra1	2917	0.363	0.1580	Yes
23	Slit3	3036	0.360	0.1614	Yes
24	Capg	3046	0.358	0.1695	Yes
25	Pcolce	3095	0.353	0.1758	Yes
26	Cxcl12	3143	0.348	0.1820	Yes
27	Rhob	3154	0.347	0.1897	Yes
28	Spp1	3155	0.347	0.1979	Yes
29	Tgm2	3309	0.333	0.1992	Yes
30	Col5a3	3329	0.331	0.2062	Yes
31	Calu	3367	0.326	0.2123	Yes
32	Jun	3385	0.324	0.2192	Yes
33	Cdh6	3386	0.324	0.2269	Yes
34	Col11a1	3405	0.322	0.2337	Yes
35	Col12a1	3481	0.316	0.2380	Yes
36	Notch2	3524	0.312	0.2435	Yes
37	Sgcd	3892	0.287	0.2347	Yes
38	Plod1	3930	0.284	0.2398	Yes
39	Timp3	4059	0.277	0.2409	Yes
40	Vim	4186	0.270	0.2419	Yes
41	Itgb5	4221	0.267	0.2467	Yes
42	Oxtr	4356	0.261	0.2472	Yes
43	Flna	4518	0.255	0.2463	Yes
44	Inhba	4607	0.250	0.2485	Yes
45	Vegfc	5084	0.226	0.2335	No
46	Crlf1	5331	0.220	0.2282	No
47	Anpep	5532	0.213	0.2247	No
48	Dcn	5583	0.211	0.2275	No
49	Gpc1	5700	0.205	0.2274	No
50	Plod3	5980	0.196	0.2202	No
51	Thbs1	6027	0.194	0.2228	No
52	Nt5e	6050	0.194	0.2264	No
53	Slit2	6134	0.189	0.2273	No
54	Ecm1	6164	0.188	0.2305	No
55	Postn	6360	0.179	0.2265	No
56	Slc6a8	6615	0.169	0.2196	No
57	Col7a1	6658	0.167	0.2218	No
58	Gadd45a	7019	0.154	0.2101	No
59	Cd44	7139	0.149	0.2085	No
60	Col16a1	7158	0.148	0.2112	No
61	Itga5	7318	0.142	0.2078	No
62	Fbln5	7442	0.138	0.2058	No
63	Tpm4	7608	0.132	0.2019	No
64	Eno2	8186	0.112	0.1799	No
65	Il15	8773	0.094	0.1572	No
66	Edil3	9016	0.087	0.1489	No
67	Vcam1	9083	0.085	0.1481	No
68	Vegfa	9131	0.084	0.1481	No
69	Copa	9190	0.083	0.1475	No
70	Mylk	9274	0.080	0.1459	No
71	Pfn2	9627	0.069	0.1325	No
72	Matn3	9653	0.069	0.1331	No
73	Itgav	10076	0.056	0.1164	No
74	Serpine2	10410	0.047	0.1033	No
75	Tagln	10567	0.042	0.0977	No
76	Itga2	10703	0.039	0.0928	No
77	Tnc	11092	0.027	0.0770	No
78	Lama3	11202	0.024	0.0729	No
79	Prrx1	11290	0.022	0.0697	No
80	Mmp14	11676	0.010	0.0535	No
81	Fbn1	11707	0.009	0.0525	No
82	Ntm	11752	0.008	0.0508	No
83	Loxl1	11802	0.007	0.0488	No
84	Sdc4	11841	0.006	0.0473	No
85	Pcolce2	12034	0.000	0.0392	No
86	Lox	12052	0.000	0.0384	No
87	Gm21451	12194	0.000	0.0324	No
88	Serpinh1	12644	-0.008	0.0135	No
89	Pvr	12712	-0.010	0.0109	No
90	Lama1	12947	-0.017	0.0013	No
91	Thbs2	13130	-0.021	-0.0060	No
92	Fap	13302	-0.026	-0.0126	No
93	Sgcg	13386	-0.029	-0.0155	No
94	Spock1	13993	-0.046	-0.0402	No
95	Fn1	14020	-0.047	-0.0402	No
96	Dpysl3	14043	-0.048	-0.0400	No
97	Cadm1	14256	-0.054	-0.0478	No
98	Sgcb	14483	-0.060	-0.0560	No
99	Cald1	14678	-0.065	-0.0627	No
100	Tgfb1	14908	-0.073	-0.0708	No
101	Fstl1	15659	-0.096	-0.1005	No
102	Tpm2	15821	-0.101	-0.1049	No
103	Gpx7	16033	-0.108	-0.1114	No
104	Lama2	16266	-0.116	-0.1185	No
105	Cdh2	16459	-0.122	-0.1238	No
106	Sat1	16498	-0.124	-0.1225	No
107	Abi3bp	16509	-0.124	-0.1200	No
108	Fgf2	16714	-0.132	-0.1256	No
109	Colgalt1	17120	-0.146	-0.1394	No
110	Col1a1	17248	-0.151	-0.1413	No
111	Myl9	17296	-0.153	-0.1397	No
112	Fzd8	17634	-0.165	-0.1501	No
113	Cdh11	17824	-0.172	-0.1541	No
114	Magee1	18109	-0.182	-0.1620	No
115	Glipr1	18376	-0.192	-0.1688	No
116	P3h1	18378	-0.192	-0.1643	No
117	Fstl3	18660	-0.204	-0.1714	No
118	Adam12	19190	-0.226	-0.1886	No
119	Efemp2	19221	-0.228	-0.1846	No
120	Fbn2	19284	-0.230	-0.1818	No
121	Fuca1	19345	-0.234	-0.1788	No
122	Fbln1	19472	-0.239	-0.1786	No
123	Itgb1	19475	-0.239	-0.1730	No
124	Sparc	19488	-0.240	-0.1678	No
125	Basp1	19550	-0.242	-0.1647	No
126	Gadd45b	19571	-0.244	-0.1598	No
127	Pmepa1	19610	-0.246	-0.1557	No
128	Lamc1	19636	-0.247	-0.1509	No
129	Tgfbr3	19762	-0.254	-0.1502	No
130	Tpm1	20436	-0.290	-0.1721	No
131	Lgals1	20688	-0.305	-0.1756	No
132	Mcm7	20718	-0.307	-0.1696	No
133	Itgb3	20975	-0.321	-0.1729	No
134	Comp	21064	-0.327	-0.1690	No
135	Id2	21177	-0.333	-0.1659	No
136	Col4a1	21291	-0.342	-0.1626	No
137	Plod2	21347	-0.346	-0.1568	No
138	Mmp2	21353	-0.346	-0.1489	No
139	Emp3	21537	-0.356	-0.1483	No
140	Col1a2	21598	-0.361	-0.1423	No
141	Ppib	21751	-0.374	-0.1400	No
142	Pdgfrb	21894	-0.388	-0.1369	No
143	Pdlim4	22127	-0.411	-0.1371	No
144	Col6a3	22250	-0.425	-0.1323	No
145	Col5a1	22303	-0.429	-0.1244	No
146	Qsox1	22376	-0.437	-0.1171	No
147	Dab2	22451	-0.448	-0.1097	No
148	Sfrp4	22636	-0.475	-0.1064	No
149	Lamc2	22758	-0.492	-0.0999	No
150	Nid2	22811	-0.500	-0.0904	No
151	Igfbp4	22827	-0.502	-0.0792	No
152	Dst	22899	-0.517	-0.0700	No
153	Bmp1	22962	-0.528	-0.0602	No
154	Col4a2	23199	-0.588	-0.0564	No
155	Gja1	23269	-0.609	-0.0450	No
156	Tfpi2	23527	-0.776	-0.0377	No
157	Sdc1	23568	-0.855	-0.0192	No
158	Thy1	23584	-0.914	0.0017	No