DatasetGMP.GMP.mono_Pheno.cls
#Group3_versus_Group4.GMP.mono_Pheno.cls
#Group3_versus_Group4_repos
PhenotypeGMP.mono_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_INTERFERON_GAMMA_RESPONSE
Enrichment Score (ES)-0.4630338
Normalized Enrichment Score (NES)-1.576162
Nominal p-value0.052953158
FDR q-value0.2526891
FWER p-Value0.283
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Tnfaip31220.8500.0153No
2Serping17150.5660.0037No
3Trim2110690.4950.0006No
4Txnip16400.431-0.0134No
5Rtp416500.430-0.0034No
6Fas17460.4190.0027No
7Il2rb23200.372-0.0128No
8Nfkbia24630.363-0.0101No
9Cxcl1027970.335-0.0162No
10St3gal528560.329-0.0108No
11Lysmd229260.324-0.0059No
12Cfh33620.295-0.0173No
13Cd4036510.284-0.0228No
14Sspn42990.254-0.0442No
15Irf446940.238-0.0553No
16Lap348700.230-0.0572No
17Mthfd253870.206-0.0743No
18Arl4a56090.196-0.0790No
19Vamp559750.182-0.0901No
20Pde4b60210.180-0.0877No
21Ido162670.171-0.0940No
22Cfb69320.150-0.1187No
23Samd9l70230.148-0.1190No
24P2ry1470240.148-0.1154No
25Socs371520.143-0.1174No
26Il18bp72610.139-0.1187No
27Cd3874080.133-0.1217No
28Nup9375330.129-0.1239No
29Vcam176520.125-0.1259No
30Cd7478340.120-0.1307No
31Bpgm79840.115-0.1343No
32Stat280270.113-0.1334No
33Casp480650.112-0.1322No
34Myd8884040.104-0.1442No
35Il4ra89000.088-0.1631No
36Sod290010.085-0.1653No
37Ifi2792340.080-0.1733No
38Itgb792700.079-0.1729No
39Irf893510.076-0.1745No
40Cdkn1a95720.071-0.1822No
41Irf296170.070-0.1823No
42Gpr1898580.063-0.1911No
43Casp899760.060-0.1946No
44Sri100380.058-0.1958No
45Psmb9101650.055-0.1998No
46St8sia4104010.049-0.2087No
47Psmb2108820.037-0.2283No
48Batf2111530.029-0.2391No
49Gch1112100.028-0.2408No
50Cd69112410.027-0.2414No
51Nod1112600.027-0.2416No
52Nfkb1113190.025-0.2434No
53Sppl2a113270.025-0.2431No
54Wars1113360.025-0.2429No
55Ifi30114560.022-0.2474No
56Psma2115010.021-0.2488No
57Tapbp115140.020-0.2489No
58Ptpn1116820.016-0.2556No
59Pla2g4a118230.012-0.2613No
60Irf5122570.001-0.2797No
61Znfx112737-0.002-0.3001No
62Arid5b12913-0.007-0.3074No
63Plscr113041-0.010-0.3126No
64Irf713233-0.015-0.3204No
65Casp713340-0.017-0.3245No
66Jak213404-0.019-0.3267No
67Ncoa313431-0.020-0.3273No
68Casp113553-0.023-0.3319No
69Rapgef614334-0.042-0.3642No
70Psma314621-0.050-0.3752No
71Tap114978-0.059-0.3890No
72Lats215161-0.065-0.3952No
73Ube2l615379-0.069-0.4027No
74Tor1b15842-0.081-0.4205No
75Cd8615931-0.084-0.4222No
76Ly6e15941-0.084-0.4206No
77Pfkp16080-0.089-0.4243No
78Adar16177-0.092-0.4262No
79Ptpn616230-0.093-0.4262No
80Il15ra16380-0.096-0.4302No
81Psmb1016574-0.101-0.4360No
82B2m16742-0.107-0.4406No
83Psmb816940-0.113-0.4463No
84Casp316980-0.114-0.4452No
85Isoc117098-0.118-0.4473No
86Vamp817139-0.119-0.4461No
87Ptpn217204-0.122-0.4459No
88Pnpt117232-0.123-0.4441No
89Rnf3117236-0.123-0.4413No
90Marchf117476-0.131-0.4483No
91Auts217557-0.133-0.4485No
92Hif1a17565-0.134-0.4456No
93Stat417674-0.136-0.4469No
94Peli117747-0.139-0.4466No
95Rbck117760-0.139-0.4438No
96Ripk117797-0.141-0.4419No
97Trim1417842-0.142-0.4404No
98Lcp218111-0.152-0.4482No
99Slc25a2818118-0.152-0.4448No
100Psme218465-0.166-0.4555No
101Nmi18479-0.166-0.4521No
102Ifit218737-0.178-0.4587Yes
103Tnfaip218785-0.180-0.4564Yes
104Cd27418823-0.182-0.4536Yes
105H2-Aa18842-0.182-0.4500Yes
106Pim118958-0.187-0.4504Yes
107Irf119108-0.193-0.4521Yes
108Tnfaip619170-0.196-0.4500Yes
109H2-DMa19231-0.199-0.4477Yes
110Il1519259-0.200-0.4441Yes
111Ifitm219282-0.201-0.4401Yes
112Trim2619286-0.201-0.4354Yes
113Eif4e319446-0.209-0.4372Yes
114Selp19474-0.211-0.4332Yes
115Ifnar219507-0.213-0.4295Yes
116Ciita19567-0.214-0.4268Yes
117Ifit319573-0.214-0.4219Yes
118Ptgs219582-0.214-0.4171Yes
119Samhd119838-0.221-0.4226Yes
120Trafd119984-0.228-0.4233Yes
121Pml20036-0.231-0.4199Yes
122Psme120138-0.237-0.4185Yes
123Cmtr120176-0.239-0.4143Yes
124Fcgr120341-0.249-0.4153Yes
125Herc620409-0.254-0.4121Yes
126Cmpk220446-0.255-0.4074Yes
127Mvp20500-0.258-0.4035Yes
128Nampt20549-0.260-0.3993Yes
129Epsti120664-0.264-0.3977Yes
130Ifih120668-0.264-0.3915Yes
131Il10ra20682-0.266-0.3857Yes
132Stat320692-0.266-0.3796Yes
133Slamf720727-0.268-0.3746Yes
134Btg120785-0.273-0.3705Yes
135Rsad220906-0.282-0.3688Yes
136Ogfr20913-0.283-0.3622Yes
137Gbp321125-0.293-0.3641Yes
138Dhx5821225-0.300-0.3611Yes
139Il721316-0.306-0.3576Yes
140Trim2521528-0.315-0.3590Yes
141Sp11021617-0.321-0.3550Yes
142Nlrc521638-0.323-0.3480Yes
143Oas221681-0.326-0.3420Yes
144Cmklr121718-0.329-0.3356Yes
145Parp1421723-0.330-0.3278Yes
146Tnfsf1021859-0.342-0.3253Yes
147Eif2ak221870-0.343-0.3175Yes
148Parp1222102-0.365-0.3185Yes
149Isg2022136-0.369-0.3110Yes
150Ripk222155-0.371-0.3028Yes
151Socs122218-0.378-0.2964Yes
152Fgl222246-0.381-0.2884Yes
153Rigi22431-0.403-0.2865Yes
154Tdrd722559-0.421-0.2817Yes
155Helz222726-0.443-0.2782Yes
156Sectm1a22756-0.450-0.2685Yes
157Rnf21322781-0.454-0.2586Yes
158Icam122862-0.467-0.2508Yes
159Lgals3bp22940-0.485-0.2424Yes
160Irf922982-0.490-0.2323Yes
161Ifitm322994-0.493-0.2209Yes
162Bank123097-0.510-0.2129Yes
163Stat123160-0.522-0.2030Yes
164Ifi3523172-0.525-0.1908Yes
165Zbp123184-0.529-0.1785Yes
166Ccl523192-0.533-0.1660Yes
167Isg1523239-0.549-0.1547Yes
168Ifi4423475-0.660-0.1488Yes
169Ddx6023477-0.661-0.1329Yes
170Oas323522-0.699-0.1180Yes
171Usp1823552-0.745-0.1012Yes
172Bst223555-0.755-0.0831Yes
173Pnp23565-0.779-0.0647Yes
174Oasl123576-0.803-0.0458Yes
175Xaf123595-0.890-0.0251Yes
176Mx223614-1.0910.0004Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_GAMMA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_GAMMA_RESPONSE