Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.mono_Pheno.cls #Group3_versus_Group4.GMP.mono_Pheno.cls #Group3_versus_Group4_repos
Phenotype	GMP.mono_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2957953
Normalized Enrichment Score (NES)	1.24244
Nominal p-value	0.07184466
FDR q-value	0.90896744
FWER p-Value	0.868

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfaip3	122	0.850	0.0156	Yes
2	Comp	211	0.766	0.0307	Yes
3	Nt5e	260	0.730	0.0465	Yes
4	Pcolce	317	0.697	0.0612	Yes
5	Capg	376	0.670	0.0752	Yes
6	Col7a1	487	0.634	0.0860	Yes
7	Fgf2	546	0.614	0.0986	Yes
8	Cald1	622	0.585	0.1097	Yes
9	Htra1	984	0.508	0.1068	Yes
10	Bgn	1014	0.503	0.1179	Yes
11	Pcolce2	1019	0.502	0.1300	Yes
12	Fstl1	1067	0.495	0.1402	Yes
13	Myl9	1090	0.491	0.1513	Yes
14	Pfn2	1107	0.488	0.1625	Yes
15	Col5a1	1265	0.469	0.1674	Yes
16	Fermt2	1349	0.457	0.1750	Yes
17	Sparc	1457	0.448	0.1814	Yes
18	Col11a1	1515	0.444	0.1899	Yes
19	Lamc1	1557	0.439	0.1989	Yes
20	Mylk	1711	0.423	0.2028	Yes
21	Spock1	1744	0.420	0.2117	Yes
22	Fas	1746	0.419	0.2219	Yes
23	Serpinh1	1904	0.401	0.2250	Yes
24	Sgcd	1915	0.400	0.2344	Yes
25	Sfrp4	1986	0.392	0.2410	Yes
26	Fuca1	1987	0.392	0.2506	Yes
27	Slc6a8	2079	0.385	0.2562	Yes
28	Thy1	2381	0.368	0.2524	Yes
29	Dpysl3	2420	0.364	0.2597	Yes
30	Rhob	2555	0.354	0.2626	Yes
31	Slit3	2651	0.347	0.2671	Yes
32	Fstl3	2703	0.342	0.2733	Yes
33	Pdlim4	2793	0.335	0.2777	Yes
34	Serpine2	2924	0.325	0.2801	Yes
35	Gem	2965	0.321	0.2863	Yes
36	Fzd8	2983	0.320	0.2934	Yes
37	Lama3	3108	0.313	0.2958	Yes
38	Tpm2	3609	0.287	0.2815	No
39	Gpc1	3633	0.286	0.2876	No
40	Tnfrsf12a	3758	0.277	0.2891	No
41	Loxl1	3865	0.272	0.2912	No
42	Timp1	3929	0.271	0.2952	No
43	Pmepa1	4257	0.255	0.2875	No
44	Cxcl12	4316	0.254	0.2912	No
45	Itga2	4420	0.251	0.2930	No
46	Vim	4673	0.239	0.2881	No
47	Itgb3	4683	0.239	0.2936	No
48	Magee1	4899	0.229	0.2900	No
49	Sdc1	4973	0.225	0.2924	No
50	Col5a3	5100	0.219	0.2924	No
51	Sgcg	5189	0.215	0.2940	No
52	Lama1	5366	0.206	0.2915	No
53	Itgb5	5501	0.202	0.2907	No
54	Tpm1	5533	0.200	0.2943	No
55	Timp3	5850	0.187	0.2854	No
56	Prrx1	6258	0.171	0.2723	No
57	Colgalt1	6514	0.168	0.2655	No
58	Qsox1	6578	0.165	0.2669	No
59	Calu	6751	0.157	0.2634	No
60	Acta2	6887	0.152	0.2614	No
61	Cdh6	6888	0.152	0.2651	No
62	Plaur	6892	0.152	0.2687	No
63	Tfpi2	7043	0.147	0.2659	No
64	Lgals1	7299	0.137	0.2584	No
65	Dst	7463	0.132	0.2547	No
66	Fn1	7502	0.130	0.2563	No
67	Pdgfrb	7510	0.130	0.2592	No
68	Tagln	7640	0.126	0.2568	No
69	Vcam1	7652	0.125	0.2594	No
70	Gadd45a	7789	0.121	0.2565	No
71	Flna	7799	0.121	0.2591	No
72	Eno2	8174	0.109	0.2458	No
73	Matn2	8293	0.107	0.2435	No
74	Jun	8686	0.095	0.2291	No
75	Gm21451	9580	0.071	0.1928	No
76	Sdc4	9610	0.070	0.1932	No
77	Eln	9664	0.069	0.1927	No
78	Ecm1	9890	0.062	0.1846	No
79	Gja1	10129	0.056	0.1758	No
80	Basp1	10167	0.055	0.1756	No
81	Thbs2	10763	0.039	0.1512	No
82	Ppib	10771	0.039	0.1519	No
83	Col4a1	11133	0.029	0.1372	No
84	Col5a2	11259	0.027	0.1325	No
85	Wipf1	11299	0.026	0.1315	No
86	Inhba	11756	0.014	0.1124	No
87	Tgfbr3	11778	0.013	0.1119	No
88	Col1a1	12313	0.000	0.0891	No
89	Tpm4	12821	-0.004	0.0676	No
90	Oxtr	12956	-0.008	0.0621	No
91	Emp3	13025	-0.010	0.0594	No
92	Plod2	13075	-0.011	0.0576	No
93	Glipr1	13114	-0.012	0.0563	No
94	Dcn	13310	-0.017	0.0484	No
95	Copa	13497	-0.021	0.0410	No
96	Sntb1	13895	-0.031	0.0248	No
97	Efemp2	13995	-0.034	0.0214	No
98	Mmp14	14092	-0.036	0.0182	No
99	Fap	14330	-0.042	0.0091	No
100	Postn	15061	-0.062	-0.0205	No
101	Vcan	15163	-0.065	-0.0232	No
102	Itgav	15172	-0.065	-0.0220	No
103	Dab2	15616	-0.075	-0.0390	No
104	Cd44	15844	-0.081	-0.0467	No
105	Itga5	16041	-0.088	-0.0529	No
106	Plod3	16054	-0.088	-0.0512	No
107	Tgm2	16368	-0.095	-0.0622	No
108	Sfrp1	16519	-0.100	-0.0662	No
109	Notch2	16728	-0.106	-0.0724	No
110	Itgb1	17328	-0.126	-0.0949	No
111	Abi3bp	17501	-0.132	-0.0990	No
112	Mcm7	17672	-0.136	-0.1029	No
113	Igfbp4	17922	-0.145	-0.1099	No
114	Vegfc	18033	-0.149	-0.1110	No
115	P3h1	18239	-0.157	-0.1159	No
116	Tgfb1	18253	-0.157	-0.1126	No
117	Fbn2	18263	-0.158	-0.1091	No
118	Mmp2	18546	-0.169	-0.1170	No
119	Gadd45b	18694	-0.176	-0.1189	No
120	Crlf1	18837	-0.182	-0.1205	No
121	Il15	19259	-0.200	-0.1335	No
122	Matn3	19260	-0.200	-0.1286	No
123	Fbln5	19383	-0.206	-0.1288	No
124	Anpep	19500	-0.213	-0.1285	No
125	Mest	19676	-0.218	-0.1306	No
126	Cap2	19928	-0.225	-0.1358	No
127	Edil3	20023	-0.230	-0.1342	No
128	Tnc	20237	-0.244	-0.1373	No
129	Col1a2	20240	-0.244	-0.1314	No
130	Cdh11	20410	-0.254	-0.1324	No
131	Spp1	20486	-0.257	-0.1293	No
132	Fbln1	20487	-0.257	-0.1230	No
133	Col6a3	20947	-0.285	-0.1355	No
134	Nid2	21041	-0.286	-0.1325	No
135	Vegfa	21074	-0.288	-0.1268	No
136	Lox	21094	-0.291	-0.1205	No
137	Adam12	21103	-0.291	-0.1137	No
138	Sat1	21105	-0.292	-0.1066	No
139	Ecm2	21110	-0.292	-0.0996	No
140	Plod1	21577	-0.319	-0.1116	No
141	Ntm	21628	-0.322	-0.1059	No
142	Col12a1	21668	-0.326	-0.0995	No
143	Pvr	21683	-0.327	-0.0921	No
144	Cdh2	21694	-0.327	-0.0846	No
145	Fbn1	21920	-0.347	-0.0856	No
146	Lamc2	21974	-0.352	-0.0793	No
147	Sgcb	22163	-0.372	-0.0781	No
148	Lrp1	22380	-0.396	-0.0776	No
149	Tgfbi	22526	-0.420	-0.0735	No
150	Cadm1	22658	-0.431	-0.0686	No
151	Thbs1	22742	-0.446	-0.0612	No
152	Gpx7	22876	-0.471	-0.0553	No
153	Lama2	23074	-0.502	-0.0514	No
154	Id2	23263	-0.556	-0.0458	No
155	Bmp1	23312	-0.575	-0.0337	No
156	Col16a1	23367	-0.604	-0.0212	No
157	Col4a2	23456	-0.650	-0.0090	No
158	Slit2	23474	-0.659	0.0064	No