DatasetGMP.GMP.mono_Pheno.cls
#Group2_versus_Group3.GMP.mono_Pheno.cls
#Group2_versus_Group3_repos
PhenotypeGMP.mono_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class1
GeneSetHALLMARK_INTERFERON_GAMMA_RESPONSE
Enrichment Score (ES)0.35357082
Normalized Enrichment Score (NES)1.2509837
Nominal p-value0.22222222
FDR q-value0.64051175
FWER p-Value0.86
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Fcgr111.3970.0325Yes
2Parp12920.7990.0472Yes
3Oas32880.6550.0541Yes
4Icam13390.6290.0666Yes
5Cd863880.6080.0788Yes
6Ido13980.6050.0925Yes
7Parp144090.6040.1061Yes
8Ptgs24100.6040.1201Yes
9Mx24370.5940.1329Yes
10Rnf2135400.5670.1417Yes
11Myd885410.5670.1549Yes
12Pim16020.5540.1652Yes
13Stat36370.5440.1764Yes
14Pfkp6450.5430.1888Yes
15Ifih16680.5390.2004Yes
16Oas27000.5310.2114Yes
17Selp9750.4880.2111Yes
18Zbp19960.4850.2215Yes
19Fgl210490.4760.2304Yes
20Nampt11330.4650.2377Yes
21Trim2511720.4620.2468Yes
22Znfx113350.4430.2502Yes
23Helz215230.4260.2521Yes
24Ifi4416200.4140.2577Yes
25Sectm1a16540.4110.2658Yes
26Cmklr117560.4010.2708Yes
27Ogfr18130.3970.2777Yes
28Gbp318230.3950.2865Yes
29Oasl118830.3920.2931Yes
30Isg1520410.3810.2953Yes
31Eif2ak221580.3700.2989Yes
32Il722630.3610.3029Yes
33Stat122860.3580.3103Yes
34Irf924670.3470.3107Yes
35Nlrc530000.3120.2953Yes
36Irf130080.3120.3022Yes
37Cmtr133190.2960.2959Yes
38Nup9333610.2930.3010Yes
39Mvp33940.2920.3064Yes
40Tdrd735490.2860.3065Yes
41Pnpt135730.2850.3121Yes
42Isoc136630.2790.3148Yes
43Il15ra36740.2790.3209Yes
44Plscr137000.2770.3262Yes
45Ncoa338740.2680.3251Yes
46Jak239890.2620.3264Yes
47Irf740560.2590.3296Yes
48Ptpn141070.2560.3334Yes
49Ciita41800.2520.3362Yes
50Il4ra42180.2500.3404Yes
51Xaf144500.2380.3361Yes
52Samhd144800.2370.3404Yes
53Itgb747280.2280.3352Yes
54Cd6947820.2260.3382Yes
55Ifitm349050.2200.3381Yes
56Sppl2a49110.2200.3430Yes
57Hif1a49230.2190.3476Yes
58Btg151110.2100.3445Yes
59Pla2g4a51480.2080.3478Yes
60Ifi3052340.2040.3489Yes
61Ccl552720.2020.3521Yes
62Slamf755220.1920.3459Yes
63Ddx6055410.1910.3496Yes
64Ifitm255530.1910.3536Yes
65Nod161270.1690.3331No
66Cxcl1064740.1550.3219No
67Tnfaip665420.1530.3226No
68Ptpn265970.1510.3238No
69Bank166070.1510.3270No
70Rigi66970.1470.3266No
71Lap367250.1460.3288No
72Pnp68350.1420.3275No
73Ifit268510.1420.3301No
74Ifit369700.1370.3283No
75Psma270910.1320.3263No
76Mthfd272520.1260.3224No
77Il18bp74280.1230.3178No
78Rsad275450.1190.3156No
79Adar76360.1150.3144No
80Peli176850.1140.3150No
81Psmb1077470.1120.3150No
82Ripk180020.1030.3066No
83Socs380780.1010.3058No
84Sp11080910.1010.3076No
85Cd3881470.0990.3075No
86Sod281580.0980.3094No
87Ripk282030.0970.3098No
88Cd7483500.0910.3057No
89Usp1886560.0820.2946No
90Casp187780.0770.2912No
91Herc688460.0750.2901No
92Trafd190640.0680.2824No
93Trim2190960.0670.2827No
94Trim2694020.0570.2710No
95Casp395290.0530.2669No
96Tnfaip295740.0510.2662No
97Cmpk298000.0440.2576No
98Wars198240.0440.2577No
99Tnfsf1099620.0400.2527No
100Psme299750.0390.2531No
101Casp4102010.0330.2443No
102Samd9l102570.0310.2427No
103Slc25a28104180.0260.2365No
104Stat2108140.0140.2200No
105Ptpn6108150.0140.2203No
106Bpgm110470.0070.2106No
107Lcp2110730.0060.2097No
108Rnf31112080.0020.2040No
109Psmb211441-0.0030.1942No
110Psme111461-0.0040.1934No
111Socs111821-0.0160.1785No
112Ifi3511954-0.0200.1733No
113Tap112043-0.0220.1701No
114Psma312132-0.0250.1669No
115Arl4a12681-0.0420.1445No
116Nmi12743-0.0440.1430No
117B2m12907-0.0500.1372No
118Tor1b12923-0.0510.1377No
119Rapgef613038-0.0550.1341No
120Il10ra13142-0.0580.1311No
121Tapbp13177-0.0590.1310No
122St8sia413520-0.0710.1181No
123Tnfaip313575-0.0740.1175No
124Psmb813926-0.0850.1046No
125Cdkn1a13944-0.0860.1058No
126Rbck114009-0.0880.1051No
127Arid5b14064-0.0890.1049No
128Bst214131-0.0920.1042No
129Lats214536-0.1030.0894No
130Dhx5814568-0.1040.0905No
131Il1514660-0.1080.0891No
132Lgals3bp14830-0.1140.0846No
133Pml14904-0.1170.0842No
134Eif4e315202-0.1260.0745No
135Irf515529-0.1380.0638No
136Epsti115539-0.1380.0666No
137Casp815815-0.1490.0583No
138Txnip15979-0.1550.0550No
139Cfb16250-0.1650.0473No
140Rtp416776-0.1820.0292No
141Ly6e17527-0.2130.0021No
142Isg2017711-0.221-0.0005No
143Trim1417771-0.2230.0021No
144Ube2l617910-0.2300.0016No
145Sspn18072-0.2370.0003No
146Vamp518084-0.2380.0053No
147Nfkb118089-0.2380.0107No
148H2-DMa18172-0.2410.0128No
149Irf218322-0.2470.0122No
150Vcam118340-0.2480.0172No
151Sri18349-0.2490.0227No
152Auts218413-0.2520.0259No
153Serping118439-0.2530.0307No
154Fas18527-0.2560.0329No
155Marchf118538-0.2570.0385No
156Cd4018834-0.2680.0321No
157Gch119144-0.2830.0255No
158P2ry1419279-0.2880.0265No
159Nfkbia19403-0.2940.0281No
160Irf419422-0.2950.0342No
161Psmb919462-0.2980.0395No
162Il2rb19464-0.2980.0464No
163Irf819677-0.3090.0445No
164Lysmd219788-0.3160.0472No
165Casp720305-0.3460.0332No
166H2-Aa20333-0.3480.0402No
167Gpr1820603-0.3640.0372No
168Ifi2720604-0.3640.0457No
169Stat420759-0.3740.0478No
170Ifnar220841-0.3790.0532No
171Pde4b21096-0.3960.0516No
172Cfh21446-0.4250.0466No
173Batf222132-0.4860.0287No
174Cd27422201-0.4940.0373No
175St3gal522231-0.4980.0476No
176Vamp822300-0.5060.0565No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_GAMMA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_GAMMA_RESPONSE