DatasetGMP.GMP.mono_Pheno.cls
#Group2_versus_Group3.GMP.mono_Pheno.cls
#Group2_versus_Group3_repos
PhenotypeGMP.mono_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class1
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.4560601
Normalized Enrichment Score (NES)1.8114356
Nominal p-value0.031936128
FDR q-value0.109094195
FWER p-Value0.062
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Hspa8440.9410.0211Yes
2Srsf12550.6740.0286Yes
3Kpnb13280.6340.0410Yes
4Sap303340.6300.0562Yes
5Dr13510.6240.0707Yes
6Odc13720.6140.0849Yes
7Lmnb18100.5130.0788Yes
8Lbr8840.5000.0879Yes
9Hnrnpd9000.4980.0994Yes
10Hnrnpu9450.4920.1095Yes
11Sqle10670.4730.1159Yes
12Bcl312110.4590.1210Yes
13Aurka12910.4480.1286Yes
14Ncl13860.4400.1354Yes
15Cdc614690.4310.1424Yes
16Nek216250.4130.1459Yes
17Mcm216290.4130.1558Yes
18Cdkn1b16910.4080.1632Yes
19Smc1a17310.4040.1714Yes
20Mcm317380.4030.1810Yes
21Tfdp117930.3980.1884Yes
22Nasp18700.3930.1948Yes
23Cdk119880.3840.1992Yes
24Cdc723730.3540.1914Yes
25Xpo124390.3500.1972Yes
26Nsd224720.3470.2043Yes
27Kif2225080.3460.2113Yes
28Fbxo525440.3440.2182Yes
29Plk125890.3400.2246Yes
30Tnpo226610.3350.2298Yes
31Ddx39a27530.3280.2339Yes
32Incenp28770.3200.2365Yes
33Kif1129220.3160.2423Yes
34Nolc129900.3120.2471Yes
35Ttk32000.3030.2456Yes
36Racgap132380.3010.2513Yes
37Kif432430.3000.2585Yes
38Cdkn2c32590.3000.2652Yes
39Prc133340.2950.2692Yes
40Top2a33380.2950.2763Yes
41Cks235830.2840.2728Yes
42Ccna236660.2790.2762Yes
43Sfpq36910.2780.2819Yes
44Mybl237070.2770.2880Yes
45Mad2l138140.2720.2902Yes
46G3bp138380.2700.2958Yes
47Snrpd139010.2670.2996Yes
48E2f240030.2610.3017Yes
49Uck240490.2590.3061Yes
50Suv39h140620.2580.3119Yes
51Upf142010.2510.3121Yes
52Cenpe43360.2440.3124Yes
53Kif2c43500.2430.3178Yes
54Chaf1a43660.2420.3230Yes
55Syncrip43740.2420.3287Yes
56Mcm646210.2300.3238Yes
57Cul146910.2290.3264Yes
58Pttg147720.2260.3285Yes
59Tpx247910.2260.3333Yes
60Abl148390.2230.3367Yes
61Tle348560.2230.3415Yes
62Hmmr48650.2220.3466Yes
63Hif1a49230.2190.3495Yes
64Tent4a49690.2170.3529Yes
65Plk450060.2140.3566Yes
66Hira50250.2140.3610Yes
67Mki6750600.2120.3647Yes
68Cdc25a50750.2120.3693Yes
69Numa151610.2070.3708Yes
70Amd151670.2070.3756Yes
71Notch252070.2050.3790Yes
72Birc552110.2050.3838Yes
73Smarcc152800.2020.3859Yes
74Smc253620.1990.3873Yes
75Cdc25b53650.1990.3921Yes
76Kif2354150.1970.3948Yes
77Pafah1b154380.1960.3986Yes
78Gspt155460.1910.3987Yes
79Chmp1a56990.1850.3968Yes
80Slc7a557280.1840.4001Yes
81H2bc1257460.1830.4038Yes
82Kif5b57880.1820.4065Yes
83Tmpo58950.1780.4064Yes
84Kif1559430.1750.4086Yes
85Mcm560200.1730.4096Yes
86Rad54l60250.1720.4136Yes
87Tacc360330.1720.4176Yes
88Slc38a160410.1720.4215Yes
89Dbf461430.1680.4212Yes
90Bub161620.1670.4246Yes
91Ythdc161810.1670.4279Yes
92Rad2162300.1650.4298Yes
93Nup5063110.1620.4304Yes
94Kif20b63300.1610.4336Yes
95Lig363540.1600.4365Yes
96Cbx163970.1590.4386Yes
97E2f364650.1560.4395Yes
98Rad23b64840.1550.4426Yes
99Tra2b65340.1530.4442Yes
100Cul366300.1500.4438Yes
101Espl166780.1480.4454Yes
102Cul4a68020.1430.4437Yes
103Top168430.1420.4454Yes
104Gins269630.1370.4437Yes
105Ilf370140.1360.4449Yes
106Wrn70190.1350.4480Yes
107Rasal270280.1350.4510Yes
108Odf271720.1290.4480Yes
109Pbk71940.1280.4503Yes
110Ndc8072330.1270.4517Yes
111Srsf1072530.1260.4540Yes
112Exo172770.1250.4561Yes
113Egf75000.1210.4495No
114Cdc2775820.1170.4489No
115Mtf278870.1070.4386No
116Arid4a80150.1030.4357No
117Polq80440.1020.4370No
118Cenpf81230.0990.4361No
119Prmt582110.0960.4347No
120Dkc182900.0940.4337No
121Map3k2083170.0930.4348No
122Ccnt184140.0900.4329No
123Traip84320.0890.4344No
124Chek186620.0820.4266No
125Mnat187000.0800.4270No
126Prpf4b87860.0770.4252No
127Ctcf87920.0770.4269No
128Ezh288380.0750.4268No
129Casp8ap288610.0750.4277No
130Aurkb89800.0710.4244No
131E2f191920.0640.4170No
132Cul592970.0600.4140No
133Stag194250.0560.4099No
134Bard194800.0540.4090No
135Rbl196020.0500.4050No
136Slc7a196120.0500.4059No
137Kmt5a99000.0410.3946No
138Pds5b100050.0380.3911No
139Pola2102600.0310.3811No
140Hmgb3102720.0300.3813No
141Stil102830.0300.3816No
142Slc12a2103300.0290.3804No
143Ewsr1104280.0260.3769No
144Meis2109070.0110.3568No
145Pole109220.0110.3564No
146E2f4109350.0110.3562No
147Ccnf109450.0100.3560No
148Smc4109480.0100.3562No
149H2az1109900.0080.3546No
150Katna1110280.0070.3532No
151Mapk14111780.0030.3470No
152Dtymk112280.0020.3449No
153Atrx11940-0.0190.3150No
154Ube2s11956-0.0200.3149No
155Cdk412016-0.0210.3129No
156Nup9812017-0.0210.3134No
157Bub312123-0.0250.3095No
158Stmn112174-0.0260.3080No
159Nusap112389-0.0330.2997No
160Knl112539-0.0370.2943No
161Jpt112800-0.0460.2843No
162Meis113031-0.0550.2758No
163Orc613192-0.0600.2704No
164Ss1813681-0.0770.2515No
165Orc513727-0.0790.2515No
166Cdc2013801-0.0810.2504No
167Fancc13841-0.0820.2507No
168Cenpa14015-0.0880.2455No
169Foxn314362-0.0990.2331No
170Prim214780-0.1120.2181No
171Pml14904-0.1170.2157No
172Atf515680-0.1430.1861No
173Rps6ka515889-0.1520.1809No
174Hus116279-0.1650.1684No
175Cdc4516428-0.1710.1662No
176Efna516602-0.1770.1632No
177Cks1b16692-0.1800.1638No
178Marcks17465-0.2110.1360No
179Pura17520-0.2130.1389No
180Tgfb117728-0.2210.1354No
181Rpa217849-0.2270.1359No
182H2ax18175-0.2410.1279No
183Dmd18249-0.2440.1307No
184Srsf218259-0.2440.1363No
185Troap18380-0.2500.1373No
186Ccnb218733-0.2640.1287No
187Smad318786-0.2670.1330No
188Brca218867-0.2700.1362No
189Myc20453-0.3560.0773No
190Ube2c20644-0.3670.0781No
191H2az220676-0.3690.0858No
192Hmga1b21257-0.4080.0710No
193Ccnd122105-0.4830.0467No
194Cdkn323329-0.7420.0126No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT