DatasetGMP.GMP.mono_Pheno.cls
#Group1_versus_Group4.GMP.mono_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeGMP.mono_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_INTERFERON_GAMMA_RESPONSE
Enrichment Score (ES)-0.5068842
Normalized Enrichment Score (NES)-1.6364346
Nominal p-value0.033464566
FDR q-value0.13269264
FWER p-Value0.191
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Tnfaip3511.0270.0196No
2Txnip24680.392-0.0751No
3Cxcl1029620.367-0.0884No
4Jak231020.358-0.0867No
5Znfx132640.348-0.0862No
6Il18bp40400.301-0.1129No
7Marchf145960.271-0.1308No
8Nup9350440.249-0.1446No
9Lcp251570.243-0.1442No
10Ncoa352910.236-0.1449No
11Serping153960.231-0.1444No
12Il2rb62080.204-0.1747No
13Trim2164850.195-0.1823No
14Btg168130.185-0.1923No
15Ifit272660.168-0.2081No
16Nod173580.164-0.2085No
17Ptgs274890.159-0.2106No
18St3gal577000.152-0.2164No
19Casp477910.148-0.2170No
20Cfb81530.133-0.2296No
21Tnfaip682100.131-0.2292No
22Lats282410.130-0.2278No
23Cmtr182780.129-0.2266No
24Pfkp85890.116-0.2373No
25Fas90000.102-0.2527No
26Nfkbia91430.096-0.2567No
27Irf591640.096-0.2555No
28Fgl294340.087-0.2651No
29Rapgef699710.067-0.2866No
30Stat2100660.064-0.2892No
31Auts2101950.059-0.2934No
32Samhd1103510.054-0.2989No
33Bpgm104380.050-0.3015No
34Cfh106580.042-0.3099No
35Tapbp107740.037-0.3141No
36Trafd1113230.020-0.3370No
37St8sia4116530.009-0.3508No
38Casp8117530.006-0.3549No
39Sppl2a118340.003-0.3583No
40Hif1a118940.001-0.3608No
41Sspn119520.000-0.3632No
42Ido1119570.000-0.3634No
43Tnfaip212142-0.000-0.3712No
44Il1512510-0.011-0.3866No
45Ifih112698-0.018-0.3942No
46Lap312776-0.020-0.3971No
47Pnpt113067-0.030-0.4088No
48Arid5b13207-0.035-0.4140No
49Myd8813267-0.037-0.4157No
50Ripk113332-0.040-0.4176No
51Socs313370-0.041-0.4183No
52Trim2513377-0.041-0.4177No
53Arl4a13443-0.044-0.4195No
54Wars113462-0.045-0.4193No
55Irf813704-0.052-0.4285No
56Fcgr113794-0.056-0.4311No
57Mthfd213820-0.057-0.4310No
58Cd7413856-0.058-0.4313No
59Pml13954-0.061-0.4341No
60Sod214029-0.064-0.4359No
61Parp1414038-0.064-0.4349No
62Nampt14150-0.068-0.4382No
63Rbck114274-0.073-0.4419No
64Irf714388-0.078-0.4450No
65Adar14419-0.079-0.4446No
66Psma214438-0.079-0.4437No
67Ptpn114499-0.082-0.4446No
68Irf214539-0.083-0.4445No
69Itgb714712-0.088-0.4499No
70Il15ra14899-0.095-0.4559No
71Rnf21314933-0.096-0.4552No
72Nfkb115003-0.099-0.4561No
73Pla2g4a15072-0.101-0.4568No
74Ptpn215141-0.104-0.4575No
75Rnf3115430-0.114-0.4674No
76Plscr115509-0.117-0.4682No
77Cd6915542-0.118-0.4671No
78Slc25a2815768-0.127-0.4740No
79Eif2ak215923-0.134-0.4777No
80Peli116090-0.140-0.4819No
81Stat416203-0.144-0.4836No
82Ifit316347-0.150-0.4865No
83Psmb216509-0.157-0.4900No
84Isoc116530-0.157-0.4875No
85Stat316778-0.166-0.4946No
86Rtp416801-0.166-0.4920No
87Cd4016836-0.168-0.4899No
88Casp117123-0.178-0.4983No
89Psme217219-0.182-0.4985No
90Trim1417417-0.190-0.5029Yes
91Casp317452-0.191-0.5002Yes
92Ogfr17505-0.194-0.4984Yes
93Tdrd717647-0.200-0.5001Yes
94Ifi2717667-0.201-0.4967Yes
95Irf417690-0.202-0.4934Yes
96Trim2617699-0.202-0.4894Yes
97Sri17764-0.205-0.4878Yes
98Slamf717818-0.207-0.4857Yes
99Stat117942-0.212-0.4864Yes
100Irf118000-0.215-0.4843Yes
101Cd3818011-0.216-0.4801Yes
102Herc618092-0.218-0.4789Yes
103Vamp518236-0.222-0.4803Yes
104Epsti118258-0.223-0.4765Yes
105Il718284-0.224-0.4728Yes
106Zbp118351-0.227-0.4708Yes
107Tap118516-0.234-0.4728Yes
108Lysmd218659-0.241-0.4738Yes
109Mvp18750-0.246-0.4724Yes
110Ube2l618752-0.246-0.4672Yes
111Il10ra18772-0.248-0.4628Yes
112Il4ra18815-0.250-0.4592Yes
113Ptpn618836-0.252-0.4548Yes
114Cmpk218927-0.256-0.4532Yes
115Gch119027-0.262-0.4518Yes
116Vcam119093-0.265-0.4490Yes
117Gbp319177-0.269-0.4468Yes
118Samd9l19330-0.276-0.4475Yes
119Parp1219339-0.276-0.4419Yes
120Tnfsf1019472-0.284-0.4416Yes
121Helz219473-0.284-0.4355Yes
122Ciita19609-0.288-0.4352Yes
123Pim119749-0.297-0.4348Yes
124Casp719871-0.304-0.4335Yes
125Gpr1819872-0.304-0.4271Yes
126Irf920011-0.311-0.4264Yes
127Sectm1a20172-0.318-0.4265Yes
128Tor1b20285-0.324-0.4244Yes
129Cd27420371-0.329-0.4210Yes
130Pde4b20381-0.330-0.4144Yes
131Nmi20565-0.341-0.4150Yes
132Psma320585-0.342-0.4086Yes
133Eif4e320614-0.344-0.4025Yes
134Sp11020824-0.358-0.4038Yes
135Cdkn1a20892-0.363-0.3990Yes
136Cd8620917-0.365-0.3923Yes
137Rsad221281-0.391-0.3994Yes
138H2-Aa21364-0.398-0.3945Yes
139Nlrc521366-0.398-0.3861Yes
140Selp21381-0.400-0.3782Yes
141Mx221545-0.413-0.3764Yes
142Isg1521614-0.419-0.3704Yes
143Ddx6021775-0.428-0.3682Yes
144Ifi4421828-0.434-0.3612Yes
145Oas221829-0.435-0.3520Yes
146Bank121876-0.439-0.3447Yes
147Psmb921951-0.447-0.3383Yes
148Oas322251-0.480-0.3409Yes
149Cmklr122256-0.480-0.3309Yes
150Psmb822451-0.498-0.3286Yes
151Ifi3022475-0.501-0.3190Yes
152Batf222744-0.537-0.3190Yes
153Ifnar222770-0.541-0.3086Yes
154Ifitm222776-0.542-0.2973Yes
155Ripk222993-0.586-0.2941Yes
156H2-DMa22995-0.586-0.2818Yes
157Dhx5823022-0.593-0.2703Yes
158P2ry1423057-0.601-0.2590Yes
159Psmb1023068-0.603-0.2467Yes
160Ifi3523151-0.623-0.2369Yes
161Socs123187-0.635-0.2250Yes
162Icam123259-0.657-0.2141Yes
163Ccl523266-0.660-0.2003Yes
164Usp1823278-0.665-0.1867Yes
165Rigi23303-0.673-0.1735Yes
166Psme123406-0.718-0.1626Yes
167Xaf123410-0.722-0.1474Yes
168Vamp823416-0.727-0.1323Yes
169Isg2023423-0.731-0.1170Yes
170Oasl123433-0.740-0.1017Yes
171Ly6e23439-0.750-0.0860Yes
172Pnp23475-0.775-0.0711Yes
173Ifitm323501-0.796-0.0553Yes
174B2m23509-0.800-0.0386Yes
175Lgals3bp23607-0.992-0.0218Yes
176Bst223617-1.0590.0003Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_GAMMA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_GAMMA_RESPONSE