DatasetGMP.GMP.mono_Pheno.cls
#Group1_versus_Group4.GMP.mono_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeGMP.mono_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.305544
Normalized Enrichment Score (NES)1.2972454
Nominal p-value0.28373015
FDR q-value0.9285578
FWER p-Value0.79
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Cdkn2c3870.7130.0003Yes
2Cenpf5390.6480.0092Yes
3Cdc25b6620.6150.0186Yes
4Incenp7760.5880.0277Yes
5Ccnf8490.5710.0381Yes
6Hnrnpu8660.5690.0509Yes
7Espl18810.5680.0637Yes
8Racgap110390.5470.0699Yes
9Hnrnpd12980.5170.0711Yes
10Kif2c13270.5090.0819Yes
11Kif1114350.4940.0891Yes
12Kpnb114780.4870.0988Yes
13Kif2315720.4730.1060Yes
14Xpo116370.4640.1143Yes
15Upf116990.4580.1225Yes
16Prc117660.4490.1303Yes
17Rad2118000.4460.1394Yes
18Numa121560.4150.1341Yes
19Sfpq24640.3930.1303Yes
20Kif2226220.3840.1327Yes
21Nek226330.3830.1413Yes
22Tent4a26420.3820.1500Yes
23Ttk27420.3790.1547Yes
24Odc127460.3780.1635Yes
25Cenpe27820.3750.1709Yes
26Top2a28560.3700.1765Yes
27H2bc1231830.3520.1709Yes
28Tfdp132330.3500.1771Yes
29Hmmr32790.3470.1834Yes
30Odf232810.3470.1916Yes
31Cdkn1b33960.3400.1947Yes
32Srsf134350.3380.2011Yes
33Cdk136650.3210.1989Yes
34Ccnb238550.3110.1982Yes
35Kif440210.3020.1983Yes
36Ndc8040620.3000.2037Yes
37Smc1a40720.2990.2104Yes
38Lmnb140730.2990.2175Yes
39Bub140870.2980.2239Yes
40Nup9840990.2970.2305Yes
41Egf42370.2910.2315Yes
42Aurka42800.2880.2365Yes
43Dr142950.2870.2427Yes
44Mcm543550.2840.2469Yes
45Kif20b43750.2820.2528Yes
46Mki6744070.2810.2581Yes
47Mapk1444080.2810.2647Yes
48Plk144160.2800.2711Yes
49Chaf1a45050.2760.2738Yes
50Notch245370.2740.2790Yes
51Lbr46360.2680.2811Yes
52Map3k2047580.2620.2822Yes
53Efna551760.2420.2701Yes
54Kif1553140.2350.2698Yes
55Tacc353170.2350.2753Yes
56G3bp155650.2290.2701Yes
57Bard155910.2280.2745Yes
58Ewsr156250.2260.2784Yes
59Tpx256410.2260.2831Yes
60Syncrip56560.2250.2878Yes
61Tnpo256750.2240.2923Yes
62Ube2s57310.2210.2952Yes
63Cenpa57590.2190.2993Yes
64Uck257850.2180.3033Yes
65Slc12a259380.2150.3019Yes
66Aurkb60810.2100.3008Yes
67Ilf363090.2020.2959Yes
68Cdc763100.2020.3007Yes
69Pole63300.2010.3046Yes
70Fancc67100.1900.2929Yes
71Ss1867350.1890.2964Yes
72Smarcc167410.1890.3006Yes
73Tmpo67890.1870.3031Yes
74Nsd269040.1810.3025Yes
75Polq69590.1790.3044Yes
76Orc570450.1770.3050Yes
77Pds5b72210.1700.3015Yes
78Rbl172310.1690.3051Yes
79Stil73470.1650.3041Yes
80Troap74040.1620.3055Yes
81Mybl276720.1530.2978No
82Ddx39a77960.1480.2960No
83Ccna278160.1470.2987No
84Cul379610.1420.2959No
85E2f379960.1400.2978No
86Tra2b79980.1400.3010No
87Hmga1b80410.1380.3025No
88Plk481840.1320.2996No
89Knl183850.1240.2940No
90Pafah1b183920.1240.2967No
91Sqle84150.1230.2986No
92Cdc4584440.1220.3003No
93Prim284940.1200.3011No
94Prpf4b85680.1170.3007No
95Amd185740.1170.3033No
96Cks286150.1150.3043No
97Hspa887390.1100.3016No
98Suv39h188890.1060.2978No
99Foxn389730.1030.2967No
100Stag191960.0950.2894No
101Ythdc192160.0940.2908No
102Atrx92200.0940.2929No
103Cul4a93530.0900.2894No
104Dbf495250.0830.2841No
105Smad396650.0790.2800No
106Ctcf97580.0750.2779No
107Cul197610.0750.2796No
108Rad54l97770.0750.2807No
109Arid4a98880.0710.2777No
110Ccnt1101020.0620.2701No
111Wrn101110.0620.2712No
112Brca2102650.0570.2660No
113Hira105630.0460.2544No
114Nusap1105800.0450.2548No
115Dtymk106270.0430.2538No
116Chmp1a106990.0400.2518No
117Mtf2107490.0380.2506No
118Chek1107970.0370.2494No
119Abl1108710.0340.2471No
120Ccnd1109190.0320.2459No
121Lig3109220.0320.2466No
122Srsf10109370.0310.2467No
123Rad23b110360.0280.2432No
124Cdc27110710.0270.2424No
125Nup50112080.0230.2371No
126Traip113900.0180.2298No
127Mcm6114130.0170.2293No
128Mcm3114880.0150.2265No
129Smc4115850.0120.2227No
130Srsf2117560.0060.2155No
131Gspt1118090.0040.2134No
132Cdc6118750.0020.2107No
133Hif1a118940.0010.2099No
134Pttg112403-0.0070.1884No
135Atf512533-0.0120.1832No
136Katna112546-0.0120.1830No
137Cdkn312657-0.0160.1787No
138Kif5b12755-0.0190.1750No
139Smc212760-0.0190.1753No
140Pola212779-0.0200.1750No
141Exo112988-0.0280.1668No
142Cul513054-0.0300.1647No
143Pbk13180-0.0350.1602No
144Slc38a113326-0.0400.1550No
145Mad2l113344-0.0400.1552No
146Mnat113503-0.0460.1495No
147H2az113912-0.0600.1335No
148Pml13954-0.0610.1332No
149Tle314009-0.0630.1324No
150Ncl14255-0.0720.1237No
151Ube2c14404-0.0780.1192No
152Nasp14477-0.0810.1180No
153Mcm214588-0.0850.1153No
154Ezh214621-0.0850.1160No
155Fbxo515155-0.1050.0957No
156Rasal215286-0.1100.0928No
157Top115335-0.1110.0933No
158Cdc25a15776-0.1270.0776No
159E2f116063-0.1390.0686No
160Rps6ka516068-0.1390.0718No
161Slc7a516511-0.1570.0566No
162Hmgb317148-0.1790.0337No
163Meis217273-0.1840.0328No
164E2f217311-0.1860.0356No
165H2az217369-0.1880.0376No
166Casp8ap217518-0.1950.0359No
167Kmt5a17606-0.1980.0368No
168Jpt117676-0.2010.0386No
169Sap3017754-0.2040.0402No
170Hus117826-0.2080.0421No
171Bcl317956-0.2130.0416No
172Birc518263-0.2230.0338No
173H2ax18654-0.2410.0229No
174E2f419034-0.2620.0129No
175Nolc119157-0.2680.0140No
176Cdc2019194-0.2700.0189No
177Slc7a119390-0.2790.0172No
178Meis119573-0.2860.0161No
179Stmn119611-0.2880.0214No
180Orc619997-0.3100.0123No
181Rpa220001-0.3110.0195No
182Dmd20139-0.3160.0211No
183Cbx120236-0.3220.0246No
184Bub320302-0.3250.0295No
185Prmt520798-0.3560.0168No
186Dkc120809-0.3570.0249No
187Tgfb121043-0.3730.0237No
188Marcks21244-0.3890.0244No
189Snrpd121606-0.4190.0189No
190Cdk421809-0.4320.0205No
191Cks1b22234-0.4760.0136No
192Pura22580-0.5160.0111No
193Myc23257-0.657-0.0022No
194Gins223445-0.7540.0076No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT