Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.mono_Pheno.cls #Group1_versus_Group4.GMP.mono_Pheno.cls #Group1_versus_Group4_repos
Phenotype	GMP.mono_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.205609
Normalized Enrichment Score (NES)	0.8440679
Nominal p-value	0.85106385
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfaip3	51	1.027	0.0227	Yes
2	Comp	297	0.749	0.0304	Yes
3	Tnfrsf12a	478	0.672	0.0390	Yes
4	Itgb5	493	0.666	0.0545	Yes
5	Rhob	570	0.638	0.0667	Yes
6	Gem	681	0.612	0.0768	Yes
7	Sgcd	1023	0.548	0.0755	Yes
8	Pfn2	1126	0.537	0.0842	Yes
9	Col11a1	1193	0.529	0.0942	Yes
10	Pdlim4	1218	0.527	0.1059	Yes
11	Itga2	1271	0.521	0.1163	Yes
12	Itgb3	1311	0.514	0.1271	Yes
13	Nt5e	1532	0.480	0.1293	Yes
14	Htra1	1536	0.479	0.1408	Yes
15	Jun	1580	0.472	0.1504	Yes
16	Gpc1	1674	0.461	0.1576	Yes
17	Capg	1793	0.447	0.1634	Yes
18	Tagln	1863	0.438	0.1710	Yes
19	Flna	2167	0.414	0.1682	Yes
20	Efemp2	2428	0.396	0.1667	Yes
21	Sfrp4	2649	0.381	0.1665	Yes
22	Loxl1	2704	0.379	0.1734	Yes
23	Pcolce	2987	0.364	0.1702	Yes
24	Lamc1	3115	0.357	0.1734	Yes
25	Serpine2	3133	0.355	0.1813	Yes
26	Fgf2	3239	0.350	0.1853	Yes
27	Col7a1	3416	0.339	0.1860	Yes
28	Matn2	3469	0.335	0.1919	Yes
29	Dpysl3	3623	0.324	0.1932	Yes
30	Fermt2	3694	0.320	0.1980	Yes
31	Cxcl12	3697	0.320	0.2056	Yes
32	Copa	3925	0.307	0.2034	No
33	Slit3	4149	0.295	0.2010	No
34	Calu	4245	0.290	0.2040	No
35	Notch2	4537	0.274	0.1982	No
36	Ecm1	4865	0.257	0.1905	No
37	Fn1	4991	0.251	0.1913	No
38	Lama3	5021	0.250	0.1961	No
39	Plaur	5206	0.240	0.1940	No
40	Cdh6	5295	0.236	0.1960	No
41	Oxtr	5391	0.231	0.1975	No
42	Bgn	5497	0.230	0.1986	No
43	Cald1	5612	0.227	0.1993	No
44	Timp1	6191	0.204	0.1796	No
45	Wipf1	6285	0.203	0.1805	No
46	Thbs2	6441	0.197	0.1787	No
47	Sparc	6543	0.193	0.1790	No
48	Gm21451	6912	0.181	0.1677	No
49	Col5a1	7094	0.175	0.1643	No
50	Edil3	7524	0.158	0.1498	No
51	Tgfbr3	7945	0.143	0.1354	No
52	Slc6a8	8100	0.135	0.1321	No
53	Sntb1	8711	0.111	0.1087	No
54	Itga5	8938	0.104	0.1016	No
55	Fap	8967	0.103	0.1029	No
56	Fas	9000	0.102	0.1040	No
57	Vegfa	9151	0.096	0.1000	No
58	Gja1	9287	0.092	0.0964	No
59	Itgb1	9489	0.085	0.0899	No
60	Lama1	9558	0.082	0.0890	No
61	Mylk	9568	0.082	0.0906	No
62	Thbs1	9738	0.076	0.0852	No
63	Thy1	9857	0.072	0.0819	No
64	Tpm2	9970	0.067	0.0788	No
65	Timp3	10219	0.058	0.0696	No
66	Cdh11	10283	0.056	0.0683	No
67	Cd44	10345	0.054	0.0670	No
68	Magee1	10406	0.052	0.0657	No
69	Sat1	10420	0.051	0.0664	No
70	Spock1	10511	0.047	0.0637	No
71	Col6a3	11160	0.025	0.0367	No
72	Itgav	11225	0.023	0.0345	No
73	Plod2	11368	0.019	0.0289	No
74	Tgfbi	11384	0.018	0.0287	No
75	Matn3	11671	0.009	0.0167	No
76	Col5a3	11788	0.005	0.0119	No
77	Col1a1	11928	0.000	0.0060	No
78	Prrx1	11948	0.000	0.0052	No
79	Myl9	12005	0.000	0.0028	No
80	Pcolce2	12211	-0.002	-0.0059	No
81	Fuca1	12471	-0.010	-0.0167	No
82	Il15	12510	-0.011	-0.0180	No
83	Mcm7	12745	-0.019	-0.0275	No
84	Ntm	13017	-0.029	-0.0384	No
85	P3h1	13184	-0.035	-0.0446	No
86	Plod1	13494	-0.046	-0.0567	No
87	Sdc1	13717	-0.053	-0.0649	No
88	Qsox1	14206	-0.071	-0.0839	No
89	Mest	14685	-0.087	-0.1022	No
90	Vim	14837	-0.092	-0.1064	No
91	Serpinh1	14890	-0.094	-0.1063	No
92	Inhba	14913	-0.095	-0.1050	No
93	Pvr	14934	-0.096	-0.1035	No
94	Tpm4	15026	-0.100	-0.1050	No
95	Basp1	15175	-0.105	-0.1087	No
96	Fbln5	15246	-0.108	-0.1091	No
97	Sdc4	15281	-0.109	-0.1079	No
98	Vegfc	15313	-0.110	-0.1065	No
99	Fzd8	15320	-0.111	-0.1041	No
100	Tfpi2	15371	-0.112	-0.1035	No
101	Plod3	15434	-0.114	-0.1034	No
102	Dst	15453	-0.115	-0.1014	No
103	Tnc	15550	-0.118	-0.1026	No
104	Lamc2	15562	-0.118	-0.1002	No
105	Pmepa1	15769	-0.127	-0.1059	No
106	Eno2	16033	-0.138	-0.1138	No
107	Fbn1	16201	-0.144	-0.1174	No
108	Lrp1	16311	-0.149	-0.1185	No
109	Col5a2	16425	-0.154	-0.1196	No
110	Sgcg	16556	-0.158	-0.1213	No
111	Pdgfrb	16697	-0.162	-0.1233	No
112	Crlf1	16830	-0.168	-0.1249	No
113	Anpep	17061	-0.176	-0.1304	No
114	Acta2	17156	-0.179	-0.1301	No
115	Mmp14	17211	-0.181	-0.1280	No
116	Cadm1	17341	-0.187	-0.1289	No
117	Glipr1	17768	-0.205	-0.1421	No
118	Fbln1	18200	-0.220	-0.1552	No
119	Adam12	18205	-0.221	-0.1500	No
120	Colgalt1	18832	-0.251	-0.1706	No
121	Fstl3	18965	-0.258	-0.1700	No
122	Mmp2	19013	-0.261	-0.1656	No
123	Vcam1	19093	-0.265	-0.1626	No
124	Gadd45a	19183	-0.269	-0.1599	No
125	Fbn2	19391	-0.279	-0.1619	No
126	Ecm2	19430	-0.282	-0.1567	No
127	Tpm1	19563	-0.285	-0.1554	No
128	Fstl1	19684	-0.292	-0.1535	No
129	Col4a1	19787	-0.299	-0.1506	No
130	Vcan	19827	-0.301	-0.1450	No
131	Lama2	19829	-0.301	-0.1377	No
132	Slit2	19935	-0.308	-0.1347	No
133	Sfrp1	20035	-0.313	-0.1314	No
134	Nid2	20097	-0.314	-0.1264	No
135	Eln	20151	-0.317	-0.1210	No
136	Postn	20249	-0.323	-0.1173	No
137	Col16a1	20262	-0.323	-0.1100	No
138	Ppib	20598	-0.343	-0.1160	No
139	Gpx7	20603	-0.343	-0.1078	No
140	Col1a2	20774	-0.354	-0.1065	No
141	Lox	20886	-0.363	-0.1024	No
142	Sgcb	21039	-0.373	-0.0999	No
143	Tgfb1	21043	-0.373	-0.0910	No
144	Dcn	21156	-0.382	-0.0865	No
145	Tgm2	21248	-0.389	-0.0810	No
146	Spp1	21501	-0.409	-0.0818	No
147	Abi3bp	21622	-0.420	-0.0768	No
148	Dab2	21812	-0.433	-0.0744	No
149	Col12a1	21856	-0.437	-0.0656	No
150	Cap2	22539	-0.511	-0.0823	No
151	Igfbp4	22799	-0.547	-0.0801	No
152	Gadd45b	22876	-0.561	-0.0698	No
153	Cdh2	23010	-0.590	-0.0612	No
154	Emp3	23019	-0.592	-0.0472	No
155	Lgals1	23091	-0.609	-0.0355	No
156	Bmp1	23139	-0.621	-0.0224	No
157	Id2	23495	-0.791	-0.0184	No
158	Col4a2	23604	-0.987	0.0009	No