DatasetGMP.GMP.mono_Pheno.cls
#Group1_versus_Group3.GMP.mono_Pheno.cls
#Group1_versus_Group3_repos
PhenotypeGMP.mono_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class2
GeneSetHALLMARK_OXIDATIVE_PHOSPHORYLATION
Enrichment Score (ES)-0.4630546
Normalized Enrichment Score (NES)-1.368929
Nominal p-value0.1880998
FDR q-value0.6049753
FWER p-Value0.663
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_OXIDATIVE_PHOSPHORYLATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Atp1b111030.460-0.0364No
2Cpt1a12790.432-0.0339No
3Gpx417050.390-0.0430No
4Mfn226720.313-0.0770No
5Atp6v1c127650.308-0.0738No
6Idh127920.306-0.0678No
7Lrpprc35070.262-0.0922No
8Mtrr35500.261-0.0880No
9Atp6v1h36110.257-0.0846No
10Dld38190.247-0.0877No
11Pdha144350.220-0.1088No
12Ldhb46410.213-0.1127No
13Afg3l248030.206-0.1148No
14Atp6v0e48160.206-0.1105No
15Dlst50330.197-0.1152No
16Aldh6a150910.195-0.1131No
17Cox1153520.187-0.1199No
18Gpi155110.180-0.1224No
19Hspa956260.176-0.1233No
20Abcb758770.166-0.1301No
21Opa161740.155-0.1391No
22Cox1563540.149-0.1433No
23Alas163810.148-0.1410No
24Cyb5a65690.142-0.1457No
25Ndufs166690.138-0.1467No
26Ndufs368380.133-0.1508No
27Atp6v0c70070.127-0.1551No
28Hadhb70620.125-0.1545No
29Mpc173250.117-0.1629No
30Tomm70a76670.108-0.1750No
31Sucla277090.107-0.1743No
32Etfdh79410.100-0.1818No
33Pmpca80930.095-0.1860No
34Mrps1184020.087-0.1972No
35Glud184820.084-0.1986No
36Mtrf188950.071-0.2145No
37Supv3l190780.065-0.2208No
38Atp6v1g193010.060-0.2289No
39Pdhx94240.056-0.2328No
40Atp6v1e196210.050-0.2400No
41Mtx296250.049-0.2390No
42Bdh298420.043-0.2472No
43Timm17a103270.028-0.2672No
44Vdac3105410.022-0.2758No
45Rhot2106110.020-0.2783No
46Mrpl11107520.016-0.2838No
47Nnt111130.006-0.2991No
48Hccs111490.005-0.3005No
49Rhot111453-0.001-0.3134No
50Ndufs411685-0.008-0.3230No
51Immt11692-0.008-0.3231No
52Ogdh11869-0.014-0.3303No
53Etfa11871-0.014-0.3300No
54Dlat11877-0.014-0.3299No
55Aco211914-0.015-0.3311No
56Ndufa912273-0.025-0.3458No
57Acaa1a12708-0.037-0.3635No
58Grpel112867-0.042-0.3692No
59Hadha13048-0.048-0.3758No
60Ndufb513099-0.049-0.3768No
61Tcirg113143-0.050-0.3775No
62Mrps1513454-0.061-0.3893No
63Sdha13507-0.063-0.3901No
64Slc25a1113692-0.068-0.3963No
65Acadm13819-0.072-0.4000No
66Idh3a14428-0.091-0.4239No
67Timm8b14431-0.091-0.4218No
68Vdac114440-0.091-0.4201No
69Fh114481-0.093-0.4196No
70Idh3g14641-0.098-0.4242No
71Atp6ap114762-0.102-0.4269No
72Etfb14963-0.109-0.4329No
73Acadvl14973-0.110-0.4308No
74Oat15008-0.110-0.4297No
75Ndufs615197-0.116-0.4350No
76Cox7c15383-0.123-0.4401No
77Ndufv215416-0.124-0.4386No
78Aifm115713-0.135-0.4481No
79Bckdha15739-0.135-0.4460No
80Fxn15807-0.138-0.4457No
81Pdp115879-0.140-0.4455No
82Cs15987-0.145-0.4467No
83Oxa1l16081-0.148-0.4473No
84Uqcrh16184-0.152-0.4481No
85Polr2f16206-0.152-0.4455No
86Mdh216509-0.162-0.4546No
87Echs116574-0.165-0.4535No
88Acadsb16680-0.169-0.4541No
89Cox7a2l16835-0.173-0.4567No
90Ndufa416958-0.177-0.4578No
91Nqo216962-0.177-0.4538No
92Htra217180-0.185-0.4588Yes
93Ndufb617220-0.186-0.4561Yes
94Ndufa317226-0.186-0.4520Yes
95Maob17251-0.187-0.4487Yes
96Ndufa517493-0.197-0.4545Yes
97Cox1017538-0.199-0.4518Yes
98Fdx117560-0.199-0.4480Yes
99Mrps3017662-0.204-0.4476Yes
100Pdhb17679-0.205-0.4436Yes
101Sdhd17707-0.206-0.4400Yes
102Uqcrc118080-0.222-0.4507Yes
103Cox6c18137-0.226-0.4479Yes
104Atp6v1d18146-0.226-0.4430Yes
105Prdx318182-0.227-0.4392Yes
106Mrpl1518424-0.239-0.4440Yes
107Suclg118462-0.240-0.4400Yes
108Timm918539-0.243-0.4376Yes
109Atp6v1f18648-0.248-0.4365Yes
110Ndufab118823-0.255-0.4380Yes
111Mrpl3418843-0.255-0.4329Yes
112Retsat18846-0.255-0.4271Yes
113Slc25a1218870-0.257-0.4222Yes
114Ech118917-0.258-0.4182Yes
115Decr118920-0.258-0.4123Yes
116Timm5018935-0.259-0.4069Yes
117Ndufb818952-0.260-0.4015Yes
118Got219263-0.272-0.4085Yes
119Iscu19307-0.274-0.4040Yes
120Mdh119432-0.280-0.4028Yes
121Casp719576-0.287-0.4022Yes
122Ndufa219671-0.292-0.3995Yes
123Acat119784-0.296-0.3974Yes
124Mrps1219851-0.300-0.3933Yes
125Sdhb19857-0.300-0.3866Yes
126Idh219888-0.302-0.3809Yes
127Acaa219941-0.305-0.3761Yes
128Cox5b19983-0.307-0.3707Yes
129Vdac220120-0.314-0.3693Yes
130Mgst320134-0.315-0.3625Yes
131Timm1320181-0.318-0.3572Yes
132Por20209-0.319-0.3509Yes
133Uqcrc220321-0.325-0.3481Yes
134Atp6v0b20466-0.334-0.3466Yes
135Bax20624-0.342-0.3454Yes
136Ndufb320670-0.347-0.3393Yes
137Uqcrfs120735-0.350-0.3339Yes
138Slc25a420741-0.351-0.3260Yes
139Ndufv120865-0.359-0.3229Yes
140Ndufs720937-0.364-0.3175Yes
141Uqcrq21008-0.368-0.3120Yes
142Ndufc121224-0.381-0.3124Yes
143Idh3b21235-0.382-0.3040Yes
144Ndufa721245-0.383-0.2955Yes
145Ndufa621263-0.384-0.2873Yes
146Cyb5r321270-0.385-0.2787Yes
147Slc25a2021288-0.387-0.2705Yes
148Cyc121337-0.390-0.2635Yes
149Ndufs221358-0.392-0.2553Yes
150Cox7b21489-0.401-0.2516Yes
151Cox1721534-0.404-0.2441Yes
152Cox4i121535-0.404-0.2348Yes
153Cox6b121594-0.410-0.2278Yes
154Sdhc21641-0.413-0.2202Yes
155Ndufa121678-0.419-0.2120Yes
156Uqcrb21688-0.420-0.2027Yes
157Uqcr1121700-0.421-0.1935Yes
158Ndufb221787-0.428-0.1872Yes
159Ldha21830-0.434-0.1790Yes
160Cox6a121861-0.436-0.1702Yes
161Slc25a321892-0.438-0.1613Yes
162Ndufc221952-0.444-0.1536Yes
163Ndufb721955-0.444-0.1434Yes
164Phyh22035-0.450-0.1364Yes
165Slc25a522051-0.452-0.1266Yes
166Ndufa822147-0.461-0.1200Yes
167Mrps2222327-0.479-0.1166Yes
168Cox5a22387-0.485-0.1079Yes
169Phb222398-0.487-0.0970Yes
170Mrpl3522430-0.490-0.0870Yes
171Cox7a222459-0.493-0.0768Yes
172Hsd17b1022673-0.526-0.0737Yes
173Atp5pb22688-0.529-0.0621Yes
174Eci122706-0.532-0.0505Yes
175Tomm2222736-0.536-0.0394Yes
176Surf122927-0.570-0.0343Yes
177Cox8a23044-0.593-0.0255Yes
178Uqcr1023064-0.597-0.0125Yes
179Ndufs823083-0.6030.0006Yes
180Timm1023572-0.9690.0022Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_OXIDATIVE_PHOSPHORYLATION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_OXIDATIVE_PHOSPHORYLATION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_OXIDATIVE_PHOSPHORYLATION