DatasetGMP.GMP.mono_Pheno.cls
#Group1_versus_Group3.GMP.mono_Pheno.cls
#Group1_versus_Group3_repos
PhenotypeGMP.mono_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.27518106
Normalized Enrichment Score (NES)1.2357471
Nominal p-value0.2782101
FDR q-value0.9674059
FWER p-Value0.867
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Hnrnpd10540.467-0.0313Yes
2Odc112900.431-0.0286Yes
3Kpnb115800.399-0.0292Yes
4H2bc1216170.396-0.0191Yes
5Notch218160.379-0.0164Yes
6Hnrnpu19020.373-0.0091Yes
7Cdkn2c20590.363-0.0050Yes
8Dr121760.3540.0004Yes
9Tnpo222670.3480.0068Yes
10Tfdp122700.3480.0169Yes
11Incenp23180.3430.0250Yes
12Cdc25b23560.3410.0334Yes
13Cdk124920.3260.0373Yes
14Numa125710.3200.0433Yes
15Kif2226210.3180.0506Yes
16Cdkn1b26260.3180.0598Yes
17Xpo126390.3160.0685Yes
18Tent4a27170.3100.0744Yes
19Egf27750.3060.0810Yes
20Sap3028220.3030.0879Yes
21Lmnb129670.2940.0904Yes
22Cdc730150.2920.0970Yes
23Kif1130600.2890.1036Yes
24Cenpf30850.2870.1110Yes
25Nek231590.2820.1162Yes
26Map3k2033460.2720.1162Yes
27Abl135410.2610.1156Yes
28Racgap135670.2600.1222Yes
29Ttk36370.2560.1268Yes
30E2f136970.2530.1317Yes
31E2f337040.2520.1388Yes
32Sfpq37690.2490.1434Yes
33Smc1a38710.2450.1463Yes
34Kif2c39680.2400.1493Yes
35Pttg139790.2390.1559Yes
36Rad2140210.2370.1611Yes
37Foxn342820.2280.1567Yes
38Cdc643380.2250.1610Yes
39Top2a43930.2220.1652Yes
40Espl144190.2210.1706Yes
41Nsd244680.2190.1750Yes
42Prc144740.2180.1812Yes
43Mapk1445520.2170.1843Yes
44Kif2346060.2140.1883Yes
45Ube2s46940.2110.1908Yes
46Lbr47420.2090.1949Yes
47Cks248060.2060.1983Yes
48Srsf150470.1970.1939Yes
49Mybl251270.1930.1962Yes
50Cul152650.1900.1959Yes
51Wrn52740.1900.2011Yes
52Ythdc153200.1880.2047Yes
53Kif453560.1860.2087Yes
54Chaf1a54580.1820.2098Yes
55Rbl156630.1750.2062Yes
56Uck256640.1750.2113Yes
57Arid4a56720.1740.2161Yes
58Stag156810.1740.2209Yes
59Mcm356980.1730.2253Yes
60Syncrip57020.1730.2303Yes
61Mcm657870.1700.2317Yes
62Pml57930.1700.2365Yes
63Sqle58280.1680.2400Yes
64Cenpe59570.1640.2393Yes
65Smarcc159620.1630.2439Yes
66Upf160980.1570.2428Yes
67Tra2b61110.1570.2469Yes
68Mcm261760.1550.2487Yes
69Nasp62120.1540.2517Yes
70Kif1562340.1530.2553Yes
71Slc12a263770.1480.2536Yes
72Hira65330.1430.2512Yes
73Mki6766030.1410.2524Yes
74Kif20b66480.1390.2546Yes
75Cdc4566980.1370.2565Yes
76Hif1a67610.1350.2579Yes
77Mcm568450.1320.2582Yes
78Tmpo68930.1310.2600Yes
79Hspa869190.1300.2628Yes
80Exo169320.1300.2661Yes
81Cul4a70640.1250.2642Yes
82Suv39h171030.1240.2662Yes
83Ewsr171270.1230.2689Yes
84Pole71370.1230.2721Yes
85Bard171500.1230.2752Yes
86Mad2l173850.1160.2686No
87Ndc8074620.1140.2687No
88Rasal276000.1100.2661No
89Bub176010.1100.2693No
90Odf276190.1090.2718No
91Tle377430.1060.2697No
92G3bp177970.1050.2705No
93Prpf4b78080.1040.2731No
94Pds5b81720.0930.2603No
95Rad54l81870.0920.2624No
96Ilf382790.0900.2612No
97Cul383280.0890.2618No
98Plk483570.0880.2632No
99Polq85130.0830.2590No
100Ss1886200.0800.2568No
101Ezh286290.0800.2588No
102Cdc25a86520.0790.2602No
103Nup5087130.0770.2599No
104Rad23b87670.0750.2599No
105Srsf1087910.0750.2611No
106Stil89280.0700.2573No
107Atrx93550.0580.2408No
108Fancc93630.0580.2423No
109Pola293760.0580.2434No
110Tpx293880.0570.2446No
111Ncl94400.0550.2441No
112Kif5b94870.0540.2437No
113Orc595080.0530.2444No
114Dtymk95720.0510.2432No
115Prim296090.0500.2432No
116Mnat196200.0500.2442No
117Smc297670.0450.2393No
118Cul597810.0440.2400No
119Pafah1b198780.0420.2372No
120Aurka100330.0370.2317No
121Tacc3100470.0360.2322No
122Dbf4100630.0360.2326No
123Brca2101760.0330.2288No
124Slc38a1101790.0330.2297No
125Gspt1102700.0300.2267No
126Knl1103030.0290.2262No
127Ccnf104470.0250.2208No
128Fbxo5104510.0250.2214No
129Ccnt1104800.0240.2209No
130Hmgb3105090.0230.2204No
131Plk1107790.0150.2093No
132Chek1108520.0140.2067No
133Ddx39a108680.0130.2064No
134Nup98109260.0110.2043No
135Amd1111170.0060.1963No
136Top111599-0.0050.1760No
137Ctcf11735-0.0090.1705No
138Hmmr11777-0.0110.1691No
139Troap12061-0.0190.1575No
140Lig312261-0.0250.1498No
141Smc412481-0.0310.1413No
142Cenpa12661-0.0360.1348No
143Mtf212699-0.0370.1343No
144Pbk12751-0.0380.1332No
145Cdc2713199-0.0520.1157No
146Nolc113246-0.0540.1153No
147Aurkb13329-0.0570.1134No
148Smad313510-0.0630.1076No
149Traip13993-0.0770.0893No
150Katna114446-0.0920.0727No
151Marcks14619-0.0970.0682No
152E2f214717-0.1000.0670No
153Casp8ap214823-0.1040.0656No
154Rps6ka514828-0.1040.0685No
155Ccna215129-0.1140.0590No
156Atf515414-0.1240.0506No
157Gins215442-0.1250.0531No
158Bub315527-0.1280.0533No
159Bcl315570-0.1290.0553No
160Efna515939-0.1420.0438No
161Kmt5a16225-0.1530.0361No
162H2az216677-0.1680.0218No
163Slc7a516868-0.1740.0188No
164E2f417140-0.1830.0126No
165Cbx117153-0.1840.0175No
166Hus117193-0.1850.0213No
167Nusap117244-0.1870.0246No
168Ccnb217458-0.1950.0213No
169Snrpd117465-0.1960.0268No
170Orc617505-0.1970.0309No
171Slc7a117563-0.2000.0343No
172Srsf217769-0.2090.0317No
173Tgfb117962-0.2160.0299No
174Dkc118008-0.2190.0344No
175Meis218183-0.2280.0337No
176Dmd18287-0.2330.0361No
177Meis118389-0.2370.0388No
178H2ax18528-0.2430.0400No
179Stmn118561-0.2440.0459No
180H2az118612-0.2470.0510No
181Prmt519555-0.2860.0192No
182Rpa219575-0.2870.0268No
183Chmp1a19737-0.2940.0286No
184Jpt120112-0.3140.0218No
185Ube2c20352-0.3270.0212No
186Cdc2020756-0.3520.0144No
187Birc520916-0.3630.0183No
188Cks1b21140-0.3770.0198No
189Pura21258-0.3840.0261No
190Hmga1b21282-0.3860.0365No
191Cdk421293-0.3870.0474No
192Cdkn321750-0.4250.0405No
193Myc22987-0.5810.0048No
194Ccnd123442-0.7610.0078No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT