Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.mono_Pheno.cls #Group1_versus_Group3.GMP.mono_Pheno.cls #Group1_versus_Group3_repos
Phenotype	GMP.mono_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.27909985
Normalized Enrichment Score (NES)	-1.0759139
Nominal p-value	0.28397566
FDR q-value	0.7075028
FWER p-Value	0.971

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Vegfa	24	1.024	0.0240	No
2	Thbs1	217	0.707	0.0331	No
3	Slit2	241	0.693	0.0491	No
4	Col16a1	593	0.552	0.0476	No
5	Tgfbi	768	0.521	0.0530	No
6	Edil3	850	0.503	0.0618	No
7	Efemp2	1068	0.465	0.0639	No
8	Jun	1354	0.424	0.0621	No
9	Lamc2	1373	0.421	0.0717	No
10	Cadm1	1426	0.417	0.0797	No
11	Notch2	1816	0.379	0.0724	No
12	Gem	1964	0.370	0.0751	No
13	Oxtr	2276	0.347	0.0704	No
14	Sat1	2363	0.340	0.0750	No
15	Rhob	2439	0.332	0.0800	No
16	Copa	2470	0.329	0.0867	No
17	Plod1	2748	0.309	0.0825	No
18	Cdh11	2751	0.308	0.0899	No
19	Col6a3	2947	0.295	0.0888	No
20	Flna	2985	0.294	0.0944	No
21	Itgb3	3234	0.278	0.0907	No
22	Tnfrsf12a	3272	0.276	0.0958	No
23	Itgb5	3416	0.267	0.0963	No
24	Ntm	3425	0.267	0.1024	No
25	Lrp1	3745	0.251	0.0950	No
26	Fbn1	3893	0.244	0.0947	No
27	Matn2	3918	0.243	0.0996	No
28	Lama2	3962	0.240	0.1036	No
29	Pvr	4175	0.231	0.1002	No
30	Tagln	4302	0.227	0.1004	No
31	Fap	4389	0.223	0.1022	No
32	Fbln5	4687	0.211	0.0947	No
33	Itgb1	4696	0.211	0.0995	No
34	Itga2	4960	0.201	0.0932	No
35	Itga5	5228	0.191	0.0865	No
36	Il15	5284	0.189	0.0888	No
37	Matn3	5367	0.186	0.0898	No
38	Pdlim4	5392	0.185	0.0933	No
39	Wipf1	5589	0.177	0.0893	No
40	Ecm1	5607	0.176	0.0929	No
41	Tnc	5732	0.172	0.0918	No
42	Gpx7	6059	0.159	0.0818	No
43	Mest	6073	0.158	0.0852	No
44	Tgfbr3	6149	0.156	0.0858	No
45	Cxcl12	6249	0.152	0.0853	No
46	Sntb1	6573	0.142	0.0750	No
47	Thbs2	6620	0.140	0.0764	No
48	Cd44	6757	0.135	0.0740	No
49	Calu	6818	0.133	0.0747	No
50	Adam12	6839	0.133	0.0770	No
51	Fn1	6973	0.128	0.0745	No
52	P3h1	7043	0.126	0.0746	No
53	Crlf1	7377	0.116	0.0633	No
54	Mcm7	7390	0.115	0.0656	No
55	Anpep	7412	0.115	0.0675	No
56	Gm21451	7460	0.114	0.0683	No
57	Dpysl3	7582	0.110	0.0658	No
58	Plaur	7848	0.103	0.0571	No
59	Cdh6	7932	0.100	0.0560	No
60	Gpc1	7949	0.099	0.0577	No
61	Itgav	8370	0.088	0.0420	No
62	Tnfaip3	9541	0.052	-0.0066	No
63	Comp	9708	0.047	-0.0125	No
64	Plod2	10032	0.037	-0.0254	No
65	Loxl1	10102	0.035	-0.0275	No
66	Nid2	10170	0.033	-0.0295	No
67	Gja1	10520	0.022	-0.0439	No
68	Bmp1	10945	0.010	-0.0617	No
69	Fbln1	11167	0.004	-0.0710	No
70	Col1a1	11301	0.000	-0.0767	No
71	Vegfc	11443	-0.000	-0.0827	No
72	Sgcb	11446	-0.000	-0.0827	No
73	Sgcd	11821	-0.012	-0.0984	No
74	Plod3	11964	-0.016	-0.1040	No
75	Mmp2	12042	-0.019	-0.1069	No
76	Id2	12340	-0.027	-0.1189	No
77	Serpine2	12446	-0.030	-0.1226	No
78	Htra1	12593	-0.034	-0.1280	No
79	Fermt2	12714	-0.037	-0.1322	No
80	Lama3	13669	-0.068	-0.1712	No
81	Col11a1	13958	-0.076	-0.1816	No
82	Tpm4	14498	-0.093	-0.2023	No
83	Lamc1	14719	-0.100	-0.2092	No
84	Ecm2	14783	-0.102	-0.2094	No
85	Pfn2	15116	-0.113	-0.2208	No
86	Basp1	15312	-0.120	-0.2262	No
87	Lox	15529	-0.128	-0.2322	No
88	Inhba	15617	-0.131	-0.2327	No
89	Timp1	15721	-0.135	-0.2338	No
90	Fbn2	15771	-0.136	-0.2326	No
91	Sfrp4	15919	-0.142	-0.2354	No
92	Mmp14	15957	-0.144	-0.2334	No
93	Slit3	16112	-0.149	-0.2364	No
94	Col1a2	16137	-0.150	-0.2337	No
95	Lama1	16527	-0.163	-0.2463	No
96	Prrx1	16744	-0.171	-0.2513	No
97	Glipr1	17397	-0.193	-0.2744	Yes
98	Spp1	17497	-0.197	-0.2738	Yes
99	Timp3	17543	-0.199	-0.2708	Yes
100	Sdc1	17575	-0.200	-0.2673	Yes
101	Col5a1	17580	-0.200	-0.2625	Yes
102	Tgfb1	17962	-0.216	-0.2735	Yes
103	Qsox1	18024	-0.220	-0.2707	Yes
104	Col4a2	18084	-0.223	-0.2678	Yes
105	Dst	18115	-0.225	-0.2636	Yes
106	Eno2	18153	-0.226	-0.2596	Yes
107	Col5a2	18237	-0.230	-0.2575	Yes
108	Capg	18285	-0.233	-0.2538	Yes
109	Col5a3	18401	-0.238	-0.2529	Yes
110	Sdc4	18403	-0.238	-0.2471	Yes
111	Vcan	18408	-0.238	-0.2415	Yes
112	Magee1	18695	-0.251	-0.2475	Yes
113	Col12a1	19025	-0.264	-0.2551	Yes
114	Postn	19056	-0.265	-0.2499	Yes
115	Pdgfrb	19100	-0.267	-0.2452	Yes
116	Sfrp1	19205	-0.271	-0.2430	Yes
117	Slc6a8	19582	-0.288	-0.2520	Yes
118	Tpm2	19829	-0.299	-0.2552	Yes
119	Tgm2	20066	-0.311	-0.2576	Yes
120	Fas	20183	-0.318	-0.2548	Yes
121	Vim	20245	-0.321	-0.2496	Yes
122	Tfpi2	20274	-0.323	-0.2429	Yes
123	Sgcg	20358	-0.328	-0.2384	Yes
124	Cap2	20449	-0.333	-0.2341	Yes
125	Col4a1	20744	-0.351	-0.2380	Yes
126	Pcolce	20857	-0.359	-0.2340	Yes
127	Ppib	20866	-0.360	-0.2256	Yes
128	Spock1	20894	-0.362	-0.2179	Yes
129	Fgf2	20934	-0.364	-0.2106	Yes
130	Gadd45b	20964	-0.365	-0.2030	Yes
131	Acta2	21026	-0.369	-0.1965	Yes
132	Bgn	21028	-0.369	-0.1875	Yes
133	Sparc	21055	-0.372	-0.1795	Yes
134	Thy1	21056	-0.372	-0.1705	Yes
135	Col7a1	21113	-0.375	-0.1637	Yes
136	Nt5e	21185	-0.380	-0.1574	Yes
137	Emp3	21238	-0.382	-0.1503	Yes
138	Colgalt1	21252	-0.384	-0.1414	Yes
139	Dcn	21370	-0.392	-0.1368	Yes
140	Vcam1	21503	-0.402	-0.1326	Yes
141	Fuca1	21509	-0.402	-0.1230	Yes
142	Igfbp4	21521	-0.403	-0.1137	Yes
143	Mylk	21563	-0.407	-0.1054	Yes
144	Gadd45a	21810	-0.431	-0.1054	Yes
145	Pmepa1	21884	-0.437	-0.0978	Yes
146	Serpinh1	22130	-0.459	-0.0970	Yes
147	Eln	22280	-0.474	-0.0918	Yes
148	Tpm1	22371	-0.484	-0.0838	Yes
149	Myl9	22438	-0.491	-0.0746	Yes
150	Fzd8	22471	-0.496	-0.0638	Yes
151	Dab2	22522	-0.502	-0.0537	Yes
152	Pcolce2	22543	-0.505	-0.0422	Yes
153	Abi3bp	22670	-0.526	-0.0347	Yes
154	Cald1	22743	-0.537	-0.0246	Yes
155	Lgals1	22751	-0.538	-0.0118	Yes
156	Cdh2	22752	-0.538	0.0014	Yes
157	Fstl3	22892	-0.562	0.0092	Yes
158	Fstl1	23554	-0.897	0.0030	Yes