Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group6_versus_Group8.CMP_Pheno.cls#Group6_versus_Group8_repos
Phenotype	CMP_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	5
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.28095594
Normalized Enrichment Score (NES)	-1.2394893
Nominal p-value	0.14164905
FDR q-value	0.3071548
FWER p-Value	0.847

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Cav1	163	0.748	0.0178	No
2	Ccnd1	226	0.689	0.0386	No
3	Cd38	404	0.590	0.0502	No
4	Slc20a1	1322	0.423	0.0182	No
5	Btg3	1400	0.416	0.0288	No
6	Cth	1788	0.383	0.0224	No
7	Cd69	1911	0.367	0.0290	No
8	Emp1	2014	0.352	0.0361	No
9	Rela	2164	0.337	0.0402	No
10	Smad7	2186	0.334	0.0508	No
11	Satb1	2661	0.294	0.0370	No
12	Mcl1	2832	0.281	0.0381	No
13	Nedd9	2892	0.277	0.0447	No
14	Cdc25b	3160	0.263	0.0403	No
15	Bik	3251	0.260	0.0448	No
16	Diablo	3334	0.255	0.0495	No
17	Ppp2r5b	3344	0.255	0.0579	No
18	Rhot2	3962	0.228	0.0345	No
19	Jun	4260	0.217	0.0269	No
20	Sqstm1	4298	0.215	0.0325	No
21	Gadd45a	4334	0.213	0.0382	No
22	Igf2r	4444	0.206	0.0398	No
23	Clu	4601	0.197	0.0387	No
24	Atf3	4611	0.196	0.0451	No
25	Sc5d	4957	0.181	0.0338	No
26	Top2a	5168	0.170	0.0290	No
27	Sptan1	5277	0.165	0.0293	No
28	Mgmt	5556	0.152	0.0204	No
29	Cd44	5593	0.151	0.0239	No
30	Crebbp	5752	0.144	0.0208	No
31	Cdkn1b	5894	0.138	0.0185	No
32	Gna15	5990	0.134	0.0183	No
33	Bcap31	6226	0.124	0.0107	No
34	Casp4	6283	0.122	0.0121	No
35	Bcl2l11	6317	0.121	0.0146	No
36	Ptk2	6435	0.116	0.0127	No
37	Ppp3r1	6525	0.113	0.0121	No
38	Dap	6779	0.104	0.0028	No
39	Pak1	6844	0.101	0.0031	No
40	Bid	7001	0.095	-0.0015	No
41	Tnf	7315	0.084	-0.0146	No
42	Rock1	7438	0.080	-0.0180	No
43	Tnfsf10	7463	0.079	-0.0165	No
44	Bnip3l	7592	0.074	-0.0204	No
45	Xiap	7825	0.068	-0.0299	No
46	Pmaip1	7957	0.063	-0.0343	No
47	Etf1	7985	0.062	-0.0335	No
48	Rara	8051	0.060	-0.0348	No
49	Ank	8295	0.052	-0.0453	No
50	Wee1	8499	0.046	-0.0540	No
51	Gch1	8628	0.042	-0.0591	No
52	Madd	8692	0.040	-0.0609	No
53	F2r	8873	0.034	-0.0689	No
54	Lgals3	8934	0.032	-0.0709	No
55	Casp8	9161	0.024	-0.0815	No
56	Btg2	9180	0.024	-0.0816	No
57	Mmp2	9193	0.023	-0.0814	No
58	Dnm1l	9309	0.019	-0.0866	No
59	Brca1	9584	0.011	-0.1002	No
60	Cdkn1a	9815	0.003	-0.1118	No
61	Pdgfrb	9856	0.001	-0.1138	No
62	Nefh	9879	0.001	-0.1149	No
63	Aifm3	9911	0.000	-0.1165	No
64	Casp1	10436	-0.007	-0.1429	No
65	Dcn	10579	-0.012	-0.1498	No
66	Timp3	10789	-0.018	-0.1598	No
67	Txnip	11018	-0.026	-0.1705	No
68	Ctnnb1	11068	-0.028	-0.1720	No
69	Sod2	11165	-0.031	-0.1758	No
70	Add1	11234	-0.034	-0.1781	No
71	Gpx3	11247	-0.034	-0.1775	No
72	Il6	11312	-0.036	-0.1795	No
73	Birc3	11443	-0.040	-0.1848	No
74	Tgfb2	11871	-0.053	-0.2047	No
75	Cflar	11901	-0.054	-0.2043	No
76	Casp7	11998	-0.059	-0.2071	No
77	Plcb2	12025	-0.059	-0.2064	No
78	Bcl2l2	12156	-0.064	-0.2107	No
79	Casp9	12290	-0.069	-0.2151	No
80	Bcl2l1	12316	-0.070	-0.2139	No
81	Gsr	12373	-0.072	-0.2143	No
82	Rnasel	12500	-0.077	-0.2180	No
83	Vdac2	12620	-0.081	-0.2213	No
84	Hmgb2	12622	-0.081	-0.2185	No
85	Bax	12649	-0.082	-0.2170	No
86	Fas	12901	-0.090	-0.2266	No
87	Cyld	13022	-0.096	-0.2294	No
88	Lef1	13036	-0.096	-0.2267	No
89	App	13631	-0.120	-0.2528	No
90	Hgf	13661	-0.121	-0.2500	No
91	Il18	13709	-0.124	-0.2481	No
92	Rhob	13790	-0.127	-0.2477	No
93	Dap3	13800	-0.128	-0.2437	No
94	H1f0	14229	-0.145	-0.2605	No
95	Casp2	14300	-0.149	-0.2588	No
96	Ppt1	14368	-0.152	-0.2570	No
97	Isg20	14688	-0.166	-0.2674	No
98	Gadd45b	14702	-0.166	-0.2623	No
99	Tnfrsf12a	14901	-0.176	-0.2663	No
100	Dnajc3	15103	-0.186	-0.2700	No
101	Eno2	15109	-0.186	-0.2638	No
102	Casp3	15433	-0.200	-0.2733	No
103	Hmox1	15585	-0.208	-0.2737	Yes
104	Lmna	15629	-0.210	-0.2686	Yes
105	Dnaja1	15746	-0.215	-0.2670	Yes
106	Tspo	15935	-0.224	-0.2688	Yes
107	Tgfbr3	16069	-0.232	-0.2675	Yes
108	Ccnd2	16223	-0.241	-0.2669	Yes
109	Gsn	16364	-0.245	-0.2655	Yes
110	Cdk2	16494	-0.252	-0.2632	Yes
111	Cd14	16556	-0.256	-0.2574	Yes
112	Ebp	16739	-0.267	-0.2574	Yes
113	Psen2	16872	-0.275	-0.2545	Yes
114	Psen1	16942	-0.280	-0.2483	Yes
115	Bmf	17102	-0.286	-0.2464	Yes
116	Gpx1	17140	-0.289	-0.2382	Yes
117	Ifitm3	17274	-0.297	-0.2346	Yes
118	Pdcd4	17500	-0.315	-0.2351	Yes
119	Il1b	17603	-0.324	-0.2290	Yes
120	Dpyd	17733	-0.330	-0.2241	Yes
121	Sod1	17745	-0.331	-0.2131	Yes
122	Dffa	17753	-0.331	-0.2019	Yes
123	Gpx4	17814	-0.337	-0.1932	Yes
124	Anxa1	17818	-0.337	-0.1816	Yes
125	Gstm2	17955	-0.351	-0.1763	Yes
126	Ifngr1	18214	-0.376	-0.1763	Yes
127	Ier3	18237	-0.379	-0.1642	Yes
128	Bcl10	18239	-0.379	-0.1511	Yes
129	Bgn	18296	-0.385	-0.1405	Yes
130	Fdxr	18333	-0.391	-0.1287	Yes
131	Pea15a	18539	-0.419	-0.1245	Yes
132	Tap1	18651	-0.434	-0.1150	Yes
133	Casp6	18943	-0.475	-0.1133	Yes
134	Ddit3	19101	-0.502	-0.1038	Yes
135	Krt18	19259	-0.537	-0.0931	Yes
136	Irf1	19361	-0.565	-0.0785	Yes
137	Retsat	19385	-0.574	-0.0597	Yes
138	Sat1	19518	-0.630	-0.0444	Yes
139	Erbb3	19634	-0.705	-0.0257	Yes
140	Timp2	19751	-0.936	0.0010	Yes