Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group3_versus_Group4.CMP_Pheno.cls#Group3_versus_Group4_repos
Phenotype	CMP_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	0.33912775
Normalized Enrichment Score (NES)	1.299901
Nominal p-value	0.13076924
FDR q-value	0.60168654
FWER p-Value	0.704

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Id2	48	0.955	0.0225	Yes
2	Ccnd1	71	0.893	0.0447	Yes
3	Traf1	83	0.877	0.0670	Yes
4	Gfpt2	114	0.839	0.0874	Yes
5	Cd80	136	0.816	0.1076	Yes
6	Dusp4	162	0.795	0.1270	Yes
7	Tnf	293	0.678	0.1381	Yes
8	Tnfaip3	295	0.676	0.1557	Yes
9	Nfkbia	379	0.639	0.1681	Yes
10	Plaur	493	0.600	0.1780	Yes
11	Gadd45a	601	0.571	0.1875	Yes
12	Ccl5	628	0.566	0.2009	Yes
13	Plpp3	662	0.556	0.2137	Yes
14	Ets2	707	0.541	0.2256	Yes
15	Tnfrsf9	732	0.537	0.2384	Yes
16	Gpr183	845	0.514	0.2461	Yes
17	Il18	903	0.505	0.2564	Yes
18	Yrdc	1086	0.471	0.2594	Yes
19	Map2k3	1133	0.466	0.2692	Yes
20	Zbtb10	1376	0.435	0.2682	Yes
21	Tnip1	1400	0.432	0.2783	Yes
22	B4galt5	1477	0.425	0.2855	Yes
23	Gem	1535	0.418	0.2935	Yes
24	Trib1	1721	0.396	0.2943	Yes
25	Ldlr	1750	0.392	0.3031	Yes
26	Olr1	1768	0.390	0.3124	Yes
27	Panx1	1796	0.387	0.3212	Yes
28	Il6st	2164	0.355	0.3117	Yes
29	Csf1	2205	0.351	0.3188	Yes
30	Nr4a1	2391	0.334	0.3181	Yes
31	Phlda1	2423	0.331	0.3252	Yes
32	Ier2	2574	0.322	0.3259	Yes
33	Cxcl10	2602	0.320	0.3329	Yes
34	Dram1	2838	0.301	0.3288	Yes
35	Phlda2	2886	0.297	0.3341	Yes
36	Slc2a3	3103	0.279	0.3304	Yes
37	Pdlim5	3125	0.277	0.3365	Yes
38	Cdkn1a	3213	0.271	0.3391	Yes
39	Relb	3415	0.259	0.3356	No
40	Slc2a6	3672	0.243	0.3289	No
41	Ifngr2	4153	0.219	0.3101	No
42	Tnc	4346	0.208	0.3057	No
43	Plek	4470	0.203	0.3047	No
44	Il15ra	4669	0.193	0.2997	No
45	Cd69	4773	0.187	0.2993	No
46	Pde4b	5454	0.157	0.2687	No
47	Ier5	5756	0.144	0.2571	No
48	Gch1	5845	0.140	0.2563	No
49	Fosl2	6109	0.133	0.2463	No
50	Nr4a2	6273	0.127	0.2413	No
51	Rel	6372	0.124	0.2395	No
52	Tubb2a	6440	0.121	0.2393	No
53	Nfkb1	6460	0.120	0.2414	No
54	Jun	6492	0.118	0.2429	No
55	Dusp5	6514	0.117	0.2449	No
56	Icam1	6547	0.116	0.2463	No
57	Fosl1	6674	0.111	0.2428	No
58	Marcks	6720	0.109	0.2433	No
59	Mxd1	6776	0.107	0.2433	No
60	Myc	6808	0.106	0.2445	No
61	F3	6891	0.103	0.2430	No
62	Birc2	6938	0.102	0.2433	No
63	Klf2	6949	0.101	0.2454	No
64	Atp2b1	7059	0.097	0.2424	No
65	Map3k8	7145	0.094	0.2405	No
66	Ptgs2	7374	0.086	0.2312	No
67	Ptger4	7785	0.071	0.2121	No
68	Plau	7841	0.070	0.2111	No
69	Ripk2	7869	0.069	0.2115	No
70	Tnfaip2	7980	0.065	0.2076	No
71	Rigi	8086	0.062	0.2039	No
72	Fosb	8110	0.061	0.2043	No
73	Zfp36	8163	0.060	0.2032	No
74	Jag1	8210	0.058	0.2024	No
75	Dnajb4	8310	0.055	0.1988	No
76	Clcf1	8315	0.054	0.2000	No
77	Bcl3	8500	0.048	0.1918	No
78	Cebpd	8580	0.045	0.1890	No
79	Slc16a6	8692	0.041	0.1844	No
80	Dusp1	8817	0.037	0.1790	No
81	Nfkbie	8913	0.034	0.1751	No
82	Nfe2l2	9011	0.030	0.1709	No
83	Ptpre	9085	0.027	0.1679	No
84	Maff	9241	0.023	0.1606	No
85	Tnfaip6	9309	0.020	0.1577	No
86	Vegfa	9466	0.016	0.1502	No
87	Sod2	9670	0.009	0.1400	No
88	Tiparp	9687	0.008	0.1394	No
89	Ehd1	9712	0.008	0.1384	No
90	Stat5a	9738	0.007	0.1373	No
91	Lamb3	9747	0.007	0.1371	No
92	Dusp2	9805	0.005	0.1343	No
93	Nfil3	9916	0.001	0.1287	No
94	Serpinb2	10144	-0.002	0.1172	No
95	Klf4	10215	-0.004	0.1137	No
96	Gadd45b	10285	-0.006	0.1104	No
97	Pfkfb3	10550	-0.015	0.0973	No
98	Ppp1r15a	10659	-0.018	0.0923	No
99	Spsb1	10943	-0.027	0.0785	No
100	Per1	11017	-0.029	0.0756	No
101	Sqstm1	11102	-0.032	0.0721	No
102	Eif1	11206	-0.035	0.0678	No
103	Fos	11260	-0.037	0.0660	No
104	Junb	11318	-0.039	0.0641	No
105	Pnrc1	11632	-0.048	0.0494	No
106	Egr1	11759	-0.053	0.0444	No
107	Hes1	11866	-0.056	0.0404	No
108	Tap1	12050	-0.062	0.0327	No
109	Cflar	12072	-0.063	0.0333	No
110	Cd44	12090	-0.063	0.0340	No
111	Klf6	12108	-0.064	0.0348	No
112	Irs2	12211	-0.067	0.0314	No
113	Il6	12296	-0.070	0.0289	No
114	Il7r	12480	-0.074	0.0215	No
115	Zc3h12a	12495	-0.074	0.0227	No
116	Kdm6b	12555	-0.076	0.0217	No
117	Tsc22d1	12841	-0.085	0.0094	No
118	Trip10	13084	-0.094	-0.0005	No
119	Btg2	13115	-0.095	0.0004	No
120	Egr2	13248	-0.100	-0.0037	No
121	Ccnl1	13254	-0.100	-0.0013	No
122	Nampt	13262	-0.101	0.0009	No
123	Tlr2	13274	-0.101	0.0030	No
124	Btg3	13367	-0.104	0.0010	No
125	Nfat5	13471	-0.108	-0.0014	No
126	Socs3	13478	-0.108	0.0011	No
127	Smad3	13969	-0.127	-0.0206	No
128	Pmepa1	14081	-0.131	-0.0228	No
129	Tnip2	14097	-0.132	-0.0201	No
130	Nfkb2	14249	-0.139	-0.0242	No
131	Ccrl2	14255	-0.139	-0.0209	No
132	Rela	14293	-0.140	-0.0191	No
133	Klf10	14367	-0.143	-0.0191	No
134	Tgif1	14479	-0.147	-0.0209	No
135	Icosl	14486	-0.147	-0.0174	No
136	Snn	14523	-0.148	-0.0153	No
137	Btg1	14897	-0.166	-0.0301	No
138	Hbegf	14963	-0.169	-0.0290	No
139	Tank	14996	-0.170	-0.0262	No
140	Birc3	15011	-0.171	-0.0224	No
141	Il1b	15050	-0.172	-0.0198	No
142	Bhlhe40	15156	-0.173	-0.0207	No
143	Tnfaip8	15217	-0.176	-0.0191	No
144	Inhba	15391	-0.183	-0.0232	No
145	Dennd5a	15429	-0.185	-0.0202	No
146	F2rl1	15584	-0.192	-0.0231	No
147	Sgk1	15647	-0.195	-0.0212	No
148	Sat1	15711	-0.198	-0.0192	No
149	Rcan1	15785	-0.202	-0.0177	No
150	Plk2	15858	-0.206	-0.0160	No
151	Litaf	16011	-0.214	-0.0182	No
152	Mcl1	16028	-0.214	-0.0134	No
153	Bcl6	16145	-0.222	-0.0135	No
154	Fjx1	16319	-0.230	-0.0163	No
155	Rnf19b	16322	-0.230	-0.0104	No
156	Ier3	16342	-0.232	-0.0054	No
157	G0s2	16356	-0.232	0.0000	No
158	B4galt1	16819	-0.260	-0.0167	No
159	Ifit2	16895	-0.265	-0.0136	No
160	Ninj1	16904	-0.266	-0.0071	No
161	Sphk1	16983	-0.269	-0.0041	No
162	Cebpb	17008	-0.271	0.0018	No
163	Rhob	17067	-0.276	0.0060	No
164	Fut4	17108	-0.280	0.0113	No
165	Atf3	17473	-0.305	0.0006	No
166	Irf1	17623	-0.315	0.0013	No
167	Serpinb8	18201	-0.368	-0.0186	No
168	Lif	18445	-0.392	-0.0208	No
169	Kynu	18643	-0.417	-0.0199	No
170	Ifih1	18756	-0.432	-0.0144	No
171	Klf9	19416	-0.578	-0.0329	No
172	Tnfsf9	19548	-0.642	-0.0229	No
173	Abca1	19769	-1.310	0.0001	No