Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group2_versus_Group4.CMP_Pheno.cls#Group2_versus_Group4_repos
Phenotype	CMP_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_MYOGENESIS
Enrichment Score (ES)	-0.2266292
Normalized Enrichment Score (NES)	-0.88800967
Nominal p-value	0.6877551
FDR q-value	0.9371855
FWER p-Value	0.996

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Stc2	60	0.944	0.0216	No
2	Schip1	83	0.893	0.0438	No
3	Col4a2	292	0.708	0.0517	No
4	Kifc3	323	0.694	0.0683	No
5	Sptan1	414	0.659	0.0809	No
6	Actn3	415	0.659	0.0981	No
7	Myo1c	737	0.565	0.0965	No
8	App	824	0.548	0.1064	No
9	Kcnh1	918	0.534	0.1156	No
10	Mras	943	0.530	0.1282	No
11	Myh9	1128	0.498	0.1319	No
12	Slc6a8	1137	0.497	0.1445	No
13	Pkia	1353	0.470	0.1458	No
14	Ak1	1361	0.469	0.1577	No
15	Tnnt1	1524	0.453	0.1612	No
16	Col15a1	1705	0.433	0.1634	No
17	Eif4a2	1759	0.427	0.1718	No
18	Mylk	1821	0.419	0.1796	No
19	Tnnc1	2169	0.383	0.1720	No
20	Cdkn1a	2287	0.374	0.1758	No
21	Flii	2396	0.365	0.1798	No
22	Igf1	2644	0.347	0.1763	No
23	Myh11	2687	0.344	0.1831	No
24	Dapk2	3249	0.308	0.1626	No
25	Csrp3	3313	0.302	0.1673	No
26	Ifrd1	3433	0.296	0.1689	No
27	Itgb1	3522	0.289	0.1720	No
28	Mylpf	3630	0.282	0.1739	No
29	Tpm3	4517	0.228	0.1347	No
30	Ncam1	4864	0.209	0.1226	No
31	Adam12	4926	0.206	0.1248	No
32	Plxnb2	5404	0.183	0.1053	No
33	Nos1	5611	0.172	0.0993	No
34	Bhlhe40	5783	0.166	0.0949	No
35	Clu	5819	0.164	0.0974	No
36	Sirt2	5946	0.158	0.0951	No
37	Bag1	6030	0.153	0.0949	No
38	Ldb3	6243	0.141	0.0878	No
39	Mapre3	6330	0.139	0.0870	No
40	Sh3bgr	6595	0.128	0.0769	No
41	Pick1	6966	0.108	0.0609	No
42	Dmd	7171	0.099	0.0531	No
43	Fdps	7426	0.088	0.0425	No
44	Pfkm	7558	0.082	0.0379	No
45	Dtna	7748	0.074	0.0302	No
46	Cnn3	7844	0.070	0.0272	No
47	Ptp4a3	8071	0.060	0.0172	No
48	Prnp	8084	0.058	0.0181	No
49	Fhl1	8087	0.058	0.0196	No
50	Pde4dip	8287	0.050	0.0107	No
51	Foxo4	8772	0.029	-0.0132	No
52	Pcx	9243	0.010	-0.0369	No
53	Wwtr1	9389	0.003	-0.0442	No
54	Tpm2	9426	0.002	-0.0459	No
55	Gja5	9832	-0.011	-0.0663	No
56	Adcy9	10017	-0.020	-0.0751	No
57	Tpd52l1	10065	-0.022	-0.0769	No
58	Tsc2	10124	-0.024	-0.0793	No
59	Agrn	10210	-0.027	-0.0829	No
60	Cdh13	10424	-0.037	-0.0928	No
61	Ache	10427	-0.037	-0.0919	No
62	Gaa	10606	-0.044	-0.0998	No
63	Gsn	10633	-0.045	-0.1000	No
64	Gpx3	10647	-0.046	-0.0994	No
65	Akt2	10919	-0.057	-0.1117	No
66	Sh2b1	11012	-0.062	-0.1148	No
67	Aplnr	11138	-0.066	-0.1194	No
68	Acsl1	11312	-0.072	-0.1264	No
69	Bin1	11721	-0.089	-0.1448	No
70	Ablim1	11804	-0.092	-0.1466	No
71	Syngr2	11815	-0.093	-0.1447	No
72	Sgcd	11838	-0.094	-0.1433	No
73	Gadd45b	11852	-0.095	-0.1415	No
74	Eno3	11884	-0.096	-0.1406	No
75	Gabarapl2	11898	-0.097	-0.1387	No
76	Pygm	11913	-0.098	-0.1369	No
77	Ryr1	11920	-0.098	-0.1347	No
78	Gnao1	11951	-0.099	-0.1336	No
79	Nqo1	12120	-0.107	-0.1394	No
80	Mybpc3	12296	-0.115	-0.1453	No
81	Smtn	12389	-0.119	-0.1469	No
82	Nav2	12421	-0.120	-0.1453	No
83	Camk2b	12658	-0.131	-0.1539	No
84	Crat	12897	-0.142	-0.1623	No
85	Hbegf	12911	-0.142	-0.1593	No
86	Sparc	12976	-0.145	-0.1588	No
87	Lpin1	12985	-0.145	-0.1554	No
88	Mef2a	13340	-0.159	-0.1693	No
89	Col1a1	13594	-0.172	-0.1777	No
90	Sorbs1	13772	-0.178	-0.1820	No
91	Sphk1	13851	-0.182	-0.1813	No
92	Ppfia4	13923	-0.184	-0.1801	No
93	Svil	14002	-0.189	-0.1791	No
94	Klf5	14056	-0.191	-0.1768	No
95	Ctf1	14406	-0.207	-0.1892	No
96	Mapk12	14878	-0.230	-0.2071	No
97	Large1	14918	-0.232	-0.2031	No
98	Cox7a1	15152	-0.244	-0.2086	No
99	Erbb3	15178	-0.246	-0.2034	No
100	Rit1	15493	-0.262	-0.2126	No
101	Tgfb1	15770	-0.277	-0.2194	Yes
102	Cryab	15776	-0.277	-0.2124	Yes
103	Tnnt3	15822	-0.279	-0.2074	Yes
104	Tagln	15938	-0.286	-0.2058	Yes
105	Psen2	15956	-0.287	-0.1992	Yes
106	Lama2	15999	-0.290	-0.1938	Yes
107	Actn2	16002	-0.290	-0.1863	Yes
108	Lsp1	16028	-0.292	-0.1800	Yes
109	Itgb5	16117	-0.297	-0.1767	Yes
110	Myom1	16126	-0.297	-0.1693	Yes
111	Cox6a2	16183	-0.301	-0.1643	Yes
112	Hdac5	16249	-0.305	-0.1597	Yes
113	Mef2c	16291	-0.308	-0.1537	Yes
114	Reep1	16485	-0.320	-0.1552	Yes
115	Cfd	16499	-0.321	-0.1475	Yes
116	Rb1	16557	-0.324	-0.1419	Yes
117	Ckb	16564	-0.325	-0.1337	Yes
118	Ckmt2	16911	-0.351	-0.1422	Yes
119	Myl6b	17073	-0.361	-0.1410	Yes
120	Cd36	17206	-0.371	-0.1380	Yes
121	Agl	17425	-0.386	-0.1390	Yes
122	Igfbp7	17465	-0.389	-0.1309	Yes
123	Kcnh2	17565	-0.396	-0.1256	Yes
124	Ocel1	17629	-0.401	-0.1183	Yes
125	Dmpk	17634	-0.402	-0.1080	Yes
126	Sorbs3	17911	-0.429	-0.1109	Yes
127	Atp6ap1	18023	-0.440	-0.1050	Yes
128	Aebp1	18106	-0.448	-0.0975	Yes
129	Itgb4	18136	-0.450	-0.0872	Yes
130	Fgf2	18221	-0.461	-0.0794	Yes
131	Speg	18274	-0.467	-0.0699	Yes
132	Atp2a1	18550	-0.505	-0.0707	Yes
133	Notch1	18582	-0.509	-0.0590	Yes
134	Tnni2	19124	-0.605	-0.0708	Yes
135	Chrnb1	19342	-0.673	-0.0642	Yes
136	Mef2d	19394	-0.688	-0.0489	Yes
137	Pdlim7	19503	-0.735	-0.0352	Yes
138	Fkbp1b	19685	-0.932	-0.0201	Yes
139	Myl4	19687	-0.935	0.0043	Yes