Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group2_versus_Group4.CMP_Pheno.cls#Group2_versus_Group4_repos
Phenotype	CMP_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2510474
Normalized Enrichment Score (NES)	1.0519695
Nominal p-value	0.34302327
FDR q-value	0.5667347
FWER p-Value	0.942

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Col12a1	54	0.946	0.0225	Yes
2	Nt5e	133	0.816	0.0404	Yes
3	Dpysl3	252	0.725	0.0538	Yes
4	Col4a2	292	0.708	0.0707	Yes
5	Col4a1	567	0.607	0.0729	Yes
6	Lamc1	614	0.595	0.0865	Yes
7	Calu	659	0.583	0.0998	Yes
8	Dst	662	0.583	0.1153	Yes
9	Mest	667	0.582	0.1306	Yes
10	Id2	722	0.568	0.1431	Yes
11	Efemp2	903	0.536	0.1482	Yes
12	Fbln1	1075	0.504	0.1530	Yes
13	Slc6a8	1137	0.497	0.1632	Yes
14	Sfrp4	1142	0.496	0.1762	Yes
15	Cdh2	1232	0.485	0.1847	Yes
16	Tnfaip3	1410	0.464	0.1880	Yes
17	Gja1	1506	0.454	0.1953	Yes
18	Fas	1619	0.442	0.2014	Yes
19	Mylk	1821	0.419	0.2024	Yes
20	Plaur	1996	0.401	0.2043	Yes
21	Cdh11	2189	0.381	0.2047	Yes
22	Fn1	2629	0.349	0.1916	Yes
23	Col5a1	2792	0.338	0.1924	Yes
24	Tgfbr3	2835	0.335	0.1992	Yes
25	Thy1	3087	0.319	0.1950	Yes
26	Vim	3287	0.304	0.1930	Yes
27	Basp1	3336	0.300	0.1985	Yes
28	Mcm7	3346	0.299	0.2061	Yes
29	Comp	3489	0.291	0.2066	Yes
30	Itgb1	3522	0.289	0.2127	Yes
31	Fbn2	3574	0.286	0.2178	Yes
32	Fstl1	3750	0.277	0.2163	Yes
33	Qsox1	3795	0.274	0.2213	Yes
34	Col16a1	3924	0.266	0.2219	Yes
35	Fzd8	4047	0.258	0.2226	Yes
36	Gpx7	4099	0.253	0.2268	Yes
37	Tpm4	4152	0.250	0.2308	Yes
38	Copa	4238	0.244	0.2330	Yes
39	Vegfa	4396	0.235	0.2313	Yes
40	Mmp14	4533	0.227	0.2304	Yes
41	Dab2	4551	0.226	0.2356	Yes
42	Col7a1	4589	0.224	0.2397	Yes
43	Magee1	4657	0.221	0.2422	Yes
44	Ecm2	4672	0.220	0.2474	Yes
45	Gpc1	4734	0.216	0.2501	Yes
46	Adam12	4926	0.206	0.2458	Yes
47	Sgcb	4932	0.205	0.2510	Yes
48	Cald1	5196	0.191	0.2428	No
49	Tnc	5234	0.189	0.2459	No
50	Eno2	5707	0.168	0.2264	No
51	Sfrp1	5798	0.165	0.2262	No
52	Loxl1	5799	0.165	0.2306	No
53	Gadd45a	6046	0.153	0.2222	No
54	Notch2	6107	0.149	0.2231	No
55	Lgals1	6388	0.136	0.2125	No
56	Fap	6460	0.133	0.2124	No
57	Col5a3	6538	0.130	0.2120	No
58	Lama1	6581	0.128	0.2133	No
59	Plod1	6801	0.117	0.2052	No
60	Ecm1	6905	0.112	0.2030	No
61	Pfn2	7217	0.097	0.1897	No
62	Mmp2	7335	0.091	0.1862	No
63	Fbn1	7407	0.089	0.1850	No
64	Flna	7439	0.087	0.1857	No
65	Timp3	7535	0.083	0.1831	No
66	Tnfrsf12a	8104	0.058	0.1557	No
67	Itga5	8133	0.056	0.1558	No
68	Slit3	8754	0.029	0.1250	No
69	Sdc1	8758	0.029	0.1256	No
70	Serpinh1	9061	0.017	0.1106	No
71	Jun	9351	0.005	0.0961	No
72	Dcn	9358	0.005	0.0959	No
73	Tpm2	9426	0.002	0.0925	No
74	Bgn	9743	-0.008	0.0767	No
75	Col1a2	9890	-0.014	0.0696	No
76	Lrp1	10126	-0.024	0.0583	No
77	Fstl3	10261	-0.030	0.0522	No
78	Itgb3	10415	-0.037	0.0454	No
79	Colgalt1	10585	-0.044	0.0380	No
80	Pdlim4	10660	-0.046	0.0354	No
81	Postn	10851	-0.054	0.0272	No
82	Matn2	11015	-0.062	0.0206	No
83	Wipf1	11041	-0.063	0.0210	No
84	Sat1	11437	-0.077	0.0029	No
85	Col5a2	11566	-0.083	-0.0014	No
86	Pcolce	11615	-0.085	-0.0016	No
87	Sgcd	11838	-0.094	-0.0104	No
88	Gadd45b	11852	-0.095	-0.0085	No
89	Tfpi2	11956	-0.099	-0.0111	No
90	Thbs2	12025	-0.103	-0.0118	No
91	Nid2	12126	-0.108	-0.0140	No
92	Tgfbi	12188	-0.110	-0.0142	No
93	Ppib	12214	-0.111	-0.0125	No
94	Serpine2	12302	-0.115	-0.0138	No
95	Edil3	12404	-0.119	-0.0158	No
96	Plod2	12437	-0.121	-0.0142	No
97	Cd44	12556	-0.126	-0.0169	No
98	Tpm1	12606	-0.128	-0.0159	No
99	Slit2	12633	-0.129	-0.0138	No
100	Inhba	12770	-0.135	-0.0171	No
101	Sparc	12976	-0.145	-0.0237	No
102	Gem	13019	-0.146	-0.0219	No
103	Rhob	13081	-0.148	-0.0211	No
104	Col1a1	13594	-0.172	-0.0425	No
105	Il6	13602	-0.172	-0.0383	No
106	Capg	13706	-0.175	-0.0389	No
107	Cap2	13868	-0.183	-0.0422	No
108	Thbs1	14353	-0.205	-0.0614	No
109	Tgm2	14360	-0.205	-0.0562	No
110	Ntm	15019	-0.238	-0.0833	No
111	Vcam1	15126	-0.243	-0.0822	No
112	Tgfb1	15770	-0.277	-0.1076	No
113	Spock1	15831	-0.280	-0.1032	No
114	Sntb1	15913	-0.284	-0.0997	No
115	Tagln	15938	-0.286	-0.0933	No
116	Lama2	15999	-0.290	-0.0886	No
117	Itgb5	16117	-0.297	-0.0866	No
118	Plod3	16160	-0.299	-0.0808	No
119	Itgav	16247	-0.305	-0.0770	No
120	Igfbp4	16408	-0.315	-0.0767	No
121	Itga2	16821	-0.343	-0.0885	No
122	Anpep	17063	-0.361	-0.0912	No
123	P3h1	17202	-0.370	-0.0883	No
124	Pvr	17448	-0.388	-0.0904	No
125	Vcan	17613	-0.400	-0.0881	No
126	Vegfc	18068	-0.445	-0.0993	No
127	Pmepa1	18121	-0.449	-0.0900	No
128	Cadm1	18178	-0.455	-0.0806	No
129	Lama3	18199	-0.458	-0.0694	No
130	Fgf2	18221	-0.461	-0.0582	No
131	Emp3	18306	-0.472	-0.0498	No
132	Fuca1	18573	-0.508	-0.0498	No
133	Spp1	18722	-0.529	-0.0432	No
134	Il15	19169	-0.616	-0.0494	No
135	Bmp1	19349	-0.675	-0.0405	No
136	Pdgfrb	19368	-0.681	-0.0232	No
137	Glipr1	19497	-0.733	-0.0102	No
138	Abi3bp	19669	-0.901	0.0052	No