Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group2_versus_Group3.CMP_Pheno.cls#Group2_versus_Group3_repos
Phenotype	CMP_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	-0.18154432
Normalized Enrichment Score (NES)	-0.77877754
Nominal p-value	0.88958335
FDR q-value	0.9251836
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Gpc3	158	0.739	0.0104	No
2	Cavin1	178	0.720	0.0274	No
3	Pim1	229	0.686	0.0420	No
4	Tgm2	329	0.633	0.0528	No
5	Atf3	389	0.608	0.0650	No
6	Bhlhe40	437	0.591	0.0774	No
7	Anxa2	932	0.483	0.0642	No
8	Vldlr	968	0.477	0.0744	No
9	Kif5a	975	0.475	0.0859	No
10	Hdlbp	1196	0.447	0.0859	No
11	Tgfbi	1298	0.434	0.0916	No
12	Plin2	1631	0.393	0.0845	No
13	Tgfb3	1868	0.369	0.0816	No
14	Pgm1	2167	0.346	0.0751	No
15	Cdkn1b	2204	0.343	0.0818	No
16	Fos	2334	0.334	0.0836	No
17	Tpi1	2381	0.330	0.0895	No
18	Sap30	2386	0.330	0.0975	No
19	Hspa5	2387	0.330	0.1057	No
20	Jmjd6	2415	0.328	0.1126	No
21	Foxo3	2630	0.314	0.1095	No
22	Pgk1	2719	0.307	0.1127	No
23	Cp	2744	0.305	0.1191	No
24	Ets1	2747	0.304	0.1266	No
25	Hk1	2844	0.298	0.1291	No
26	S100a4	2959	0.290	0.1306	No
27	Ero1a	3034	0.285	0.1339	No
28	Sdc3	3105	0.281	0.1374	No
29	Phkg1	3259	0.273	0.1364	No
30	Pfkp	3422	0.262	0.1347	No
31	Rragd	3700	0.247	0.1267	No
32	Col5a1	3788	0.241	0.1283	No
33	Grhpr	3818	0.238	0.1328	No
34	Gapdhs	3832	0.238	0.1381	No
35	Myh9	4083	0.223	0.1309	No
36	Dusp1	4239	0.217	0.1284	No
37	Gpi1	4260	0.216	0.1328	No
38	Vegfa	4493	0.202	0.1260	No
39	Ak4	4712	0.191	0.1196	No
40	Lxn	4742	0.190	0.1229	No
41	Ndst1	4756	0.189	0.1270	No
42	Ids	4976	0.180	0.1203	No
43	Stbd1	5174	0.170	0.1145	No
44	Mxi1	5378	0.160	0.1081	No
45	Ddit4	5417	0.158	0.1101	No
46	Isg20	5439	0.157	0.1130	No
47	Nr3c1	5452	0.156	0.1163	No
48	Hmox1	5639	0.147	0.1104	No
49	Errfi1	5827	0.141	0.1044	No
50	Mt1	5835	0.140	0.1076	No
51	Pfkl	5847	0.140	0.1105	No
52	P4ha1	5858	0.139	0.1135	No
53	Car12	6162	0.126	0.1012	No
54	Maff	6376	0.117	0.0932	No
55	Adora2b	6430	0.114	0.0934	No
56	Tpd52	6524	0.110	0.0914	No
57	Tiparp	6830	0.099	0.0783	No
58	Cdkn1a	6987	0.092	0.0726	No
59	Hk2	7003	0.091	0.0741	No
60	Rora	7258	0.079	0.0632	No
61	Zfp36	7363	0.074	0.0597	No
62	Ugp2	7408	0.072	0.0593	No
63	Pnrc1	7442	0.071	0.0594	No
64	Pgm2	7901	0.053	0.0374	No
65	Hexa	7959	0.050	0.0357	No
66	Kdm3a	7991	0.049	0.0354	No
67	Siah2	8083	0.045	0.0318	No
68	Map3k1	8206	0.040	0.0266	No
69	Ccng2	8329	0.034	0.0212	No
70	Ppfia4	8353	0.033	0.0209	No
71	B4galnt2	8408	0.031	0.0189	No
72	Slc6a6	8494	0.028	0.0153	No
73	Pygm	8532	0.026	0.0141	No
74	Zfp292	8724	0.019	0.0048	No
75	Ampd3	8833	0.014	-0.0004	No
76	Pdk1	8869	0.012	-0.0019	No
77	F3	8925	0.011	-0.0044	No
78	Stc2	9369	-0.003	-0.0269	No
79	Tes	9424	-0.004	-0.0296	No
80	Aldoa	9674	-0.014	-0.0419	No
81	Pfkfb3	10129	-0.032	-0.0643	No
82	Cavin3	10205	-0.036	-0.0672	No
83	Large1	10709	-0.055	-0.0915	No
84	Atp7a	10815	-0.060	-0.0953	No
85	Klf7	10869	-0.062	-0.0965	No
86	Ankzf1	10886	-0.063	-0.0957	No
87	Klf6	10981	-0.067	-0.0988	No
88	Scarb1	10990	-0.068	-0.0975	No
89	Ppargc1a	10996	-0.068	-0.0961	No
90	Pklr	11033	-0.070	-0.0962	No
91	Pam	11245	-0.078	-0.1050	No
92	Glrx	11303	-0.081	-0.1059	No
93	Nedd4l	11529	-0.091	-0.1151	No
94	Fbp1	11579	-0.093	-0.1153	No
95	Pdk3	11704	-0.097	-0.1191	No
96	Dtna	11795	-0.101	-0.1212	No
97	Prkca	11804	-0.101	-0.1191	No
98	Jun	12141	-0.116	-0.1334	No
99	Noct	12150	-0.116	-0.1309	No
100	Ldhc	12248	-0.120	-0.1328	No
101	Klhl24	12260	-0.120	-0.1304	No
102	Ldha	12295	-0.122	-0.1291	No
103	Fam162a	12677	-0.135	-0.1451	No
104	Cxcr4	12712	-0.137	-0.1434	No
105	Nagk	12741	-0.138	-0.1414	No
106	Il6	12773	-0.139	-0.1395	No
107	Slc37a4	12862	-0.142	-0.1404	No
108	Xpnpep1	12986	-0.147	-0.1430	No
109	Tpst2	12999	-0.148	-0.1399	No
110	Ier3	13274	-0.160	-0.1499	No
111	Gcnt2	13547	-0.173	-0.1595	No
112	Cav1	13556	-0.173	-0.1555	No
113	Gpc4	13604	-0.175	-0.1536	No
114	Rbpj	13630	-0.176	-0.1504	No
115	Mif	13643	-0.177	-0.1466	No
116	Wsb1	13654	-0.177	-0.1427	No
117	Dcn	13667	-0.178	-0.1389	No
118	Tnfaip3	13738	-0.180	-0.1379	No
119	Plac8	13765	-0.181	-0.1347	No
120	Btg1	13884	-0.186	-0.1361	No
121	Nfil3	14127	-0.199	-0.1435	No
122	Plaur	14469	-0.214	-0.1555	No
123	Ilvbl	14496	-0.216	-0.1515	No
124	Hs3st1	14771	-0.230	-0.1597	No
125	Egfr	14999	-0.242	-0.1652	No
126	Irs2	15010	-0.242	-0.1597	No
127	Eno3	15093	-0.246	-0.1577	No
128	Gaa	15140	-0.249	-0.1539	No
129	Gpc1	15684	-0.277	-0.1746	Yes
130	Slc2a5	15713	-0.278	-0.1691	Yes
131	Ndrg1	15797	-0.283	-0.1663	Yes
132	Galk1	15940	-0.292	-0.1662	Yes
133	P4ha2	16217	-0.309	-0.1725	Yes
134	Vhl	16260	-0.312	-0.1669	Yes
135	Slc2a1	16284	-0.313	-0.1603	Yes
136	Ext1	16565	-0.330	-0.1663	Yes
137	Akap12	16664	-0.337	-0.1629	Yes
138	Selenbp1	16846	-0.347	-0.1634	Yes
139	Slc2a3	16934	-0.354	-0.1590	Yes
140	Slc25a1	16981	-0.357	-0.1524	Yes
141	Ddit3	17097	-0.365	-0.1492	Yes
142	Ppp1r15a	17115	-0.366	-0.1409	Yes
143	Fosl2	17205	-0.374	-0.1361	Yes
144	Eno1b	17326	-0.384	-0.1326	Yes
145	Csrp2	17509	-0.399	-0.1319	Yes
146	Bcl2	17523	-0.400	-0.1226	Yes
147	Gys1	17589	-0.405	-0.1158	Yes
148	B3galt6	17905	-0.433	-0.1211	Yes
149	Angptl4	18062	-0.449	-0.1178	Yes
150	Aldoc	18262	-0.475	-0.1160	Yes
151	Ndst2	18375	-0.491	-0.1095	Yes
152	Gbe1	18544	-0.513	-0.1052	Yes
153	Bgn	18753	-0.549	-0.1021	Yes
154	Pdgfb	18754	-0.549	-0.0884	Yes
155	Bnip3l	18792	-0.557	-0.0764	Yes
156	Sult2b1	18843	-0.566	-0.0648	Yes
157	Prdx5	18892	-0.577	-0.0528	Yes
158	Casp6	18939	-0.585	-0.0405	Yes
159	Eno2	19046	-0.608	-0.0307	Yes
160	Kdelr3	19176	-0.638	-0.0214	Yes
161	Sdc2	19260	-0.663	-0.0090	Yes
162	Cdkn1c	19327	-0.687	0.0048	Yes
163	Cited2	19385	-0.713	0.0197	Yes