Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group1_versus_Group4.CMP_Pheno.cls#Group1_versus_Group4_repos
Phenotype	CMP_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.22990453
Normalized Enrichment Score (NES)	0.98240405
Nominal p-value	0.4969697
FDR q-value	0.9179934
FWER p-Value	0.986

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Lamc1	11	1.115	0.0303	Yes
2	Comp	97	0.810	0.0484	Yes
3	Mmp2	135	0.759	0.0676	Yes
4	Bgn	352	0.631	0.0740	Yes
5	Fbln1	405	0.615	0.0884	Yes
6	Fas	650	0.547	0.0911	Yes
7	Slc6a8	687	0.538	0.1042	Yes
8	Id2	778	0.521	0.1140	Yes
9	Fstl1	827	0.511	0.1257	Yes
10	Cdh2	890	0.501	0.1364	Yes
11	Fbn2	927	0.497	0.1484	Yes
12	Fn1	988	0.490	0.1589	Yes
13	Jun	1049	0.479	0.1691	Yes
14	Efemp2	1069	0.475	0.1813	Yes
15	Fzd8	1123	0.468	0.1915	Yes
16	Gja1	1206	0.457	0.2000	Yes
17	Gpc1	1342	0.440	0.2053	Yes
18	Dab2	2168	0.362	0.1733	Yes
19	Sfrp4	2407	0.343	0.1707	Yes
20	Tnc	2534	0.332	0.1735	Yes
21	Calu	2579	0.329	0.1803	Yes
22	Ecm1	2848	0.311	0.1753	Yes
23	Sdc1	2946	0.307	0.1789	Yes
24	Dpysl3	2981	0.304	0.1856	Yes
25	Mest	3063	0.299	0.1897	Yes
26	Col1a2	3141	0.293	0.1939	Yes
27	Il6	3188	0.290	0.1996	Yes
28	Copa	3562	0.265	0.1880	Yes
29	Sgcb	3584	0.264	0.1942	Yes
30	Notch2	3636	0.260	0.1988	Yes
31	Mmp14	3641	0.260	0.2058	Yes
32	Col5a3	3780	0.254	0.2058	Yes
33	Tpm2	3910	0.245	0.2060	Yes
34	Eno2	3981	0.240	0.2091	Yes
35	Dst	4099	0.235	0.2097	Yes
36	Anpep	4305	0.224	0.2054	Yes
37	Flna	4352	0.221	0.2092	Yes
38	Gem	4381	0.220	0.2139	Yes
39	Qsox1	4529	0.212	0.2123	Yes
40	Plaur	4579	0.209	0.2156	Yes
41	Pfn2	4619	0.207	0.2193	Yes
42	Cald1	4682	0.204	0.2218	Yes
43	Mcm7	4712	0.202	0.2259	Yes
44	Fbn1	4819	0.196	0.2260	Yes
45	Adam12	4935	0.190	0.2254	Yes
46	Postn	4950	0.189	0.2299	Yes
47	Itgb1	5328	0.172	0.2155	No
48	Itgb3	5355	0.171	0.2189	No
49	Matn2	5528	0.164	0.2146	No
50	Pcolce	5647	0.159	0.2130	No
51	Wipf1	5956	0.143	0.2013	No
52	Basp1	6107	0.137	0.1975	No
53	Dcn	6300	0.129	0.1912	No
54	Fgf2	6535	0.118	0.1826	No
55	Thbs1	6848	0.109	0.1697	No
56	Edil3	7148	0.096	0.1571	No
57	Itgb5	7324	0.089	0.1507	No
58	Slit3	7603	0.077	0.1387	No
59	Col4a2	7747	0.071	0.1333	No
60	Plod2	7893	0.064	0.1277	No
61	Capg	8328	0.047	0.1069	No
62	Tgfbr3	8396	0.044	0.1047	No
63	Mylk	8434	0.042	0.1040	No
64	Lama3	9013	0.021	0.0751	No
65	Nid2	9442	0.003	0.0534	No
66	Sparc	9707	-0.003	0.0400	No
67	Vegfa	9830	-0.009	0.0341	No
68	P3h1	9832	-0.009	0.0343	No
69	Sgcd	9883	-0.010	0.0320	No
70	Tnfaip3	10050	-0.016	0.0240	No
71	Rhob	10070	-0.017	0.0235	No
72	Tpm4	10219	-0.023	0.0166	No
73	Tgm2	10383	-0.029	0.0091	No
74	Col5a1	10619	-0.039	-0.0018	No
75	Gpx7	10632	-0.039	-0.0013	No
76	Ntm	10691	-0.041	-0.0031	No
77	Cap2	10999	-0.054	-0.0173	No
78	Lama2	11019	-0.055	-0.0167	No
79	Timp3	11030	-0.055	-0.0157	No
80	Pdlim4	11052	-0.056	-0.0152	No
81	Colgalt1	11138	-0.060	-0.0179	No
82	Il15	11491	-0.075	-0.0338	No
83	Cd44	11591	-0.080	-0.0366	No
84	Nt5e	11639	-0.082	-0.0367	No
85	Tagln	11797	-0.087	-0.0423	No
86	Tfpi2	11974	-0.095	-0.0486	No
87	Cdh11	12166	-0.103	-0.0555	No
88	Thbs2	12191	-0.105	-0.0538	No
89	Sntb1	12382	-0.113	-0.0604	No
90	Itga5	12627	-0.124	-0.0694	No
91	Tnfrsf12a	12824	-0.129	-0.0758	No
92	Lrp1	12874	-0.131	-0.0746	No
93	Fap	12926	-0.134	-0.0735	No
94	Serpine2	13272	-0.149	-0.0870	No
95	Col1a1	13819	-0.172	-0.1100	No
96	Sfrp1	13828	-0.172	-0.1056	No
97	Col12a1	13830	-0.172	-0.1009	No
98	Loxl1	13831	-0.172	-0.0961	No
99	Col16a1	13953	-0.175	-0.0974	No
100	Itgav	14273	-0.191	-0.1084	No
101	Col4a1	14424	-0.200	-0.1105	No
102	Fstl3	14600	-0.209	-0.1136	No
103	Magee1	14611	-0.210	-0.1083	No
104	Spock1	14775	-0.219	-0.1106	No
105	Plod1	15006	-0.232	-0.1159	No
106	Vegfc	15042	-0.233	-0.1112	No
107	Lama1	15059	-0.234	-0.1055	No
108	Tpm1	15327	-0.247	-0.1123	No
109	Thy1	15433	-0.254	-0.1106	No
110	Gadd45a	15593	-0.263	-0.1114	No
111	Col7a1	15611	-0.264	-0.1050	No
112	Pvr	15685	-0.267	-0.1013	No
113	Lgals1	15723	-0.270	-0.0957	No
114	Pdgfrb	15787	-0.271	-0.0914	No
115	Tgfb1	15794	-0.272	-0.0842	No
116	Sat1	15805	-0.272	-0.0772	No
117	Glipr1	16049	-0.286	-0.0816	No
118	Pmepa1	16231	-0.298	-0.0826	No
119	Vcam1	16258	-0.300	-0.0756	No
120	Inhba	16289	-0.302	-0.0688	No
121	Col5a2	16421	-0.313	-0.0668	No
122	Vim	16621	-0.324	-0.0680	No
123	Ppib	16677	-0.327	-0.0617	No
124	Igfbp4	16744	-0.330	-0.0559	No
125	Serpinh1	16789	-0.333	-0.0490	No
126	Ecm2	17168	-0.360	-0.0582	No
127	Fuca1	17275	-0.369	-0.0534	No
128	Slit2	17356	-0.374	-0.0471	No
129	Tgfbi	17888	-0.418	-0.0626	No
130	Emp3	17945	-0.423	-0.0537	No
131	Plod3	18139	-0.444	-0.0513	No
132	Gadd45b	18169	-0.447	-0.0404	No
133	Cadm1	18356	-0.470	-0.0368	No
134	Spp1	19068	-0.591	-0.0567	No
135	Itga2	19222	-0.629	-0.0470	No
136	Bmp1	19312	-0.655	-0.0334	No
137	Vcan	19495	-0.724	-0.0226	No
138	Abi3bp	19766	-1.324	0.0003	No