Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group1_versus_Group4.CMP_Pheno.cls#Group1_versus_Group4_repos
Phenotype	CMP_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.26586005
Normalized Enrichment Score (NES)	-1.2890434
Nominal p-value	0.08477842
FDR q-value	0.38242528
FWER p-Value	0.774

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Mmp2	135	0.759	0.0139	No
2	Sptan1	136	0.758	0.0347	No
3	Bik	292	0.658	0.0448	No
4	Bgn	352	0.631	0.0591	No
5	Fas	650	0.547	0.0589	No
6	Bcl2l2	851	0.508	0.0626	No
7	Hmox1	878	0.503	0.0751	No
8	F2r	938	0.495	0.0856	No
9	Ccnd1	946	0.494	0.0988	No
10	Jun	1049	0.479	0.1067	No
11	Txnip	1347	0.439	0.1036	No
12	Fdxr	1456	0.428	0.1098	No
13	Wee1	1529	0.420	0.1177	No
14	Casp2	1837	0.388	0.1127	No
15	Ppp3r1	1877	0.384	0.1212	No
16	Slc20a1	1921	0.381	0.1294	No
17	Bcl2l1	2227	0.358	0.1237	No
18	Casp3	2973	0.305	0.0941	No
19	Il18	3132	0.293	0.0941	No
20	Etf1	3180	0.290	0.0997	No
21	Il6	3188	0.290	0.1072	No
22	Ctnnb1	3333	0.281	0.1076	No
23	Tap1	3668	0.259	0.0977	No
24	Eno2	3981	0.240	0.0884	No
25	Lef1	4213	0.228	0.0828	No
26	Mgmt	4359	0.221	0.0815	No
27	Brca1	4494	0.214	0.0806	No
28	Dffa	4495	0.214	0.0864	No
29	Dnaja1	4799	0.197	0.0764	No
30	Cdkn1a	5106	0.180	0.0657	No
31	Dap3	5250	0.176	0.0633	No
32	Top2a	5376	0.170	0.0616	No
33	Timp2	5435	0.168	0.0632	No
34	Sc5d	5839	0.148	0.0467	No
35	Lmna	5869	0.147	0.0493	No
36	Bax	5965	0.143	0.0484	No
37	Nefh	6027	0.141	0.0491	No
38	Dcn	6300	0.129	0.0388	No
39	Cdc25b	6446	0.121	0.0347	No
40	Bid	6488	0.119	0.0359	No
41	Tgfb2	6905	0.106	0.0176	No
42	Dap	7038	0.100	0.0136	No
43	Add1	7194	0.094	0.0083	No
44	Mcl1	7517	0.081	-0.0059	No
45	Dnm1l	7689	0.073	-0.0126	No
46	Smad7	7876	0.065	-0.0203	No
47	Pmaip1	8316	0.047	-0.0413	No
48	Psen1	8333	0.046	-0.0409	No
49	Tgfbr3	8396	0.044	-0.0428	No
50	Madd	8733	0.031	-0.0591	No
51	Ccnd2	9078	0.017	-0.0762	No
52	Il1b	9217	0.011	-0.0829	No
53	Btg3	9679	-0.002	-0.1063	No
54	Cyld	9957	-0.013	-0.1201	No
55	Irf1	10060	-0.016	-0.1248	No
56	Rhob	10070	-0.017	-0.1248	No
57	Gpx4	10238	-0.024	-0.1327	No
58	Cflar	10550	-0.036	-0.1476	No
59	App	10572	-0.037	-0.1476	No
60	Pdcd4	10702	-0.042	-0.1530	No
61	Xiap	10883	-0.050	-0.1609	No
62	Ifngr1	10986	-0.053	-0.1646	No
63	Timp3	11030	-0.055	-0.1653	No
64	Igf2r	11167	-0.061	-0.1705	No
65	Gpx3	11273	-0.065	-0.1741	No
66	Casp8	11278	-0.066	-0.1725	No
67	Pak1	11453	-0.073	-0.1794	No
68	Krt18	11589	-0.079	-0.1841	No
69	Cd44	11591	-0.080	-0.1819	No
70	Bcap31	11603	-0.080	-0.1803	No
71	Cdkn1b	11654	-0.082	-0.1806	No
72	Isg20	11751	-0.085	-0.1832	No
73	Sqstm1	11773	-0.086	-0.1819	No
74	Gna15	11786	-0.087	-0.1801	No
75	Ank	11977	-0.095	-0.1872	No
76	Crebbp	12155	-0.103	-0.1934	No
77	Casp1	12223	-0.106	-0.1939	No
78	Dnajc3	12429	-0.116	-0.2011	No
79	Hmgb2	12447	-0.116	-0.1988	No
80	Rela	12529	-0.121	-0.1997	No
81	Gsn	12594	-0.123	-0.1995	No
82	Pea15a	12599	-0.123	-0.1964	No
83	Tnfrsf12a	12824	-0.129	-0.2043	No
84	Cd69	12962	-0.136	-0.2075	No
85	Casp7	13110	-0.142	-0.2111	No
86	Rnasel	13204	-0.147	-0.2118	No
87	Vdac2	13237	-0.148	-0.2094	No
88	Casp4	13334	-0.152	-0.2101	No
89	Rhot2	13677	-0.167	-0.2230	No
90	Birc3	14117	-0.183	-0.2403	No
91	H1f0	14134	-0.184	-0.2361	No
92	Btg2	14157	-0.186	-0.2321	No
93	Rock1	14218	-0.189	-0.2300	No
94	Plcb2	14861	-0.223	-0.2566	No
95	Ppt1	14942	-0.227	-0.2545	No
96	Bcl10	15014	-0.232	-0.2518	No
97	Tnf	15292	-0.244	-0.2592	Yes
98	Emp1	15381	-0.251	-0.2568	Yes
99	Satb1	15477	-0.257	-0.2546	Yes
100	Gsr	15555	-0.261	-0.2514	Yes
101	Gadd45a	15593	-0.263	-0.2461	Yes
102	Diablo	15658	-0.267	-0.2420	Yes
103	Cdk2	15765	-0.270	-0.2400	Yes
104	Pdgfrb	15787	-0.271	-0.2337	Yes
105	Sat1	15805	-0.272	-0.2271	Yes
106	Dpyd	15852	-0.275	-0.2219	Yes
107	Psen2	15874	-0.276	-0.2154	Yes
108	Casp6	15985	-0.283	-0.2133	Yes
109	Hgf	16022	-0.285	-0.2073	Yes
110	Ptk2	16325	-0.305	-0.2143	Yes
111	Rara	16416	-0.312	-0.2104	Yes
112	Aifm3	16420	-0.313	-0.2020	Yes
113	Sod1	16608	-0.323	-0.2026	Yes
114	Sod2	16611	-0.324	-0.1939	Yes
115	Lgals3	16699	-0.329	-0.1893	Yes
116	Atf3	16702	-0.329	-0.1804	Yes
117	Cav1	16896	-0.339	-0.1810	Yes
118	Cth	16984	-0.343	-0.1760	Yes
119	Ifitm3	17217	-0.363	-0.1779	Yes
120	Erbb3	17262	-0.367	-0.1701	Yes
121	Tnfsf10	17361	-0.375	-0.1648	Yes
122	Clu	17427	-0.381	-0.1577	Yes
123	Bmf	17633	-0.397	-0.1572	Yes
124	Bcl2l11	17649	-0.399	-0.1471	Yes
125	Casp9	17676	-0.402	-0.1374	Yes
126	Gstm2	17729	-0.405	-0.1289	Yes
127	Anxa1	17730	-0.405	-0.1179	Yes
128	Ppp2r5b	17971	-0.426	-0.1184	Yes
129	Tspo	18165	-0.447	-0.1160	Yes
130	Gadd45b	18169	-0.447	-0.1039	Yes
131	Retsat	18431	-0.478	-0.1041	Yes
132	Ddit3	18645	-0.507	-0.1011	Yes
133	Gpx1	18873	-0.547	-0.0977	Yes
134	Nedd9	18915	-0.556	-0.0845	Yes
135	Gch1	19313	-0.655	-0.0868	Yes
136	Cd38	19387	-0.676	-0.0720	Yes
137	Bnip3l	19427	-0.691	-0.0551	Yes
138	Ebp	19574	-0.771	-0.0414	Yes
139	Ier3	19694	-0.919	-0.0223	Yes
140	Cd14	19716	-0.957	0.0028	Yes