| Dataset | CMP.CMP_Pheno.cls#Group1_versus_Group3.CMP_Pheno.cls#Group1_versus_Group3_repos |
| Phenotype | CMP_Pheno.cls#Group1_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.28797156 |
| Normalized Enrichment Score (NES) | -1.325442 |
| Nominal p-value | 0.066797644 |
| FDR q-value | 1.0 |
| FWER p-Value | 0.741 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Ckb | 134 | 0.704 | 0.0122 | No |
| 2 | St14 | 391 | 0.560 | 0.0142 | No |
| 3 | Prlr | 523 | 0.522 | 0.0216 | No |
| 4 | Pgr | 553 | 0.514 | 0.0340 | No |
| 5 | Tst | 560 | 0.510 | 0.0475 | No |
| 6 | Tjp3 | 797 | 0.468 | 0.0481 | No |
| 7 | Mdk | 946 | 0.445 | 0.0526 | No |
| 8 | St6galnac2 | 995 | 0.437 | 0.0619 | No |
| 9 | Aldh3a2 | 1091 | 0.424 | 0.0685 | No |
| 10 | Tfpi2 | 1256 | 0.401 | 0.0710 | No |
| 11 | Fos | 1492 | 0.373 | 0.0691 | No |
| 12 | Dnajc12 | 1752 | 0.350 | 0.0653 | No |
| 13 | Sgk1 | 1832 | 0.343 | 0.0705 | No |
| 14 | Chpt1 | 1851 | 0.341 | 0.0788 | No |
| 15 | Siah2 | 1852 | 0.341 | 0.0880 | No |
| 16 | Kif20a | 1934 | 0.335 | 0.0930 | No |
| 17 | Gla | 1948 | 0.334 | 0.1013 | No |
| 18 | Dlg5 | 2160 | 0.318 | 0.0991 | No |
| 19 | Mettl3 | 2523 | 0.294 | 0.0886 | No |
| 20 | Amfr | 2782 | 0.276 | 0.0829 | No |
| 21 | Cdh1 | 2811 | 0.274 | 0.0889 | No |
| 22 | Elovl5 | 2814 | 0.274 | 0.0962 | No |
| 23 | Bag1 | 3310 | 0.243 | 0.0775 | No |
| 24 | Chst8 | 3458 | 0.235 | 0.0764 | No |
| 25 | Myof | 4026 | 0.206 | 0.0530 | No |
| 26 | Anxa9 | 4311 | 0.193 | 0.0438 | No |
| 27 | Fgfr3 | 4334 | 0.192 | 0.0478 | No |
| 28 | Top2a | 4492 | 0.183 | 0.0448 | No |
| 29 | Car12 | 4676 | 0.176 | 0.0402 | No |
| 30 | Jak1 | 4707 | 0.175 | 0.0434 | No |
| 31 | Jak2 | 4754 | 0.172 | 0.0457 | No |
| 32 | Etfb | 4926 | 0.164 | 0.0414 | No |
| 33 | Fkbp5 | 5092 | 0.156 | 0.0372 | No |
| 34 | Aff1 | 5223 | 0.150 | 0.0346 | No |
| 35 | Fdft1 | 5400 | 0.141 | 0.0295 | No |
| 36 | Slc16a1 | 5486 | 0.137 | 0.0288 | No |
| 37 | Impa2 | 5553 | 0.135 | 0.0291 | No |
| 38 | Tmprss3 | 5739 | 0.128 | 0.0232 | No |
| 39 | Ptges | 5811 | 0.126 | 0.0229 | No |
| 40 | Scnn1a | 6011 | 0.118 | 0.0160 | No |
| 41 | Ncor2 | 6078 | 0.116 | 0.0157 | No |
| 42 | Tob1 | 6305 | 0.110 | 0.0072 | No |
| 43 | Gper1 | 6315 | 0.109 | 0.0097 | No |
| 44 | Btg3 | 6589 | 0.098 | -0.0016 | No |
| 45 | Hspa4l | 6851 | 0.088 | -0.0125 | No |
| 46 | Mapt | 6866 | 0.088 | -0.0109 | No |
| 47 | Klf4 | 6955 | 0.085 | -0.0131 | No |
| 48 | Farp1 | 6956 | 0.085 | -0.0108 | No |
| 49 | Cacna2d2 | 7149 | 0.078 | -0.0185 | No |
| 50 | Cav1 | 7385 | 0.068 | -0.0286 | No |
| 51 | Abhd2 | 7400 | 0.067 | -0.0275 | No |
| 52 | Slc29a1 | 7437 | 0.066 | -0.0276 | No |
| 53 | Tspan13 | 7470 | 0.065 | -0.0275 | No |
| 54 | Llgl2 | 7477 | 0.064 | -0.0260 | No |
| 55 | Rbbp8 | 7679 | 0.057 | -0.0347 | No |
| 56 | Tiam1 | 7720 | 0.056 | -0.0353 | No |
| 57 | Pkp3 | 7779 | 0.054 | -0.0368 | No |
| 58 | Plk4 | 7922 | 0.050 | -0.0427 | No |
| 59 | Snx10 | 8165 | 0.041 | -0.0539 | No |
| 60 | Prkar2b | 8291 | 0.037 | -0.0593 | No |
| 61 | Xrcc3 | 8353 | 0.034 | -0.0615 | No |
| 62 | Nab2 | 8650 | 0.023 | -0.0759 | No |
| 63 | Fkbp4 | 8762 | 0.020 | -0.0810 | No |
| 64 | Isg20 | 9083 | 0.008 | -0.0971 | No |
| 65 | Idh2 | 9135 | 0.006 | -0.0996 | No |
| 66 | Gins2 | 9249 | 0.001 | -0.1053 | No |
| 67 | Myb | 9536 | -0.006 | -0.1197 | No |
| 68 | Slc24a3 | 9726 | -0.014 | -0.1290 | No |
| 69 | Cd44 | 9782 | -0.016 | -0.1314 | No |
| 70 | Large1 | 9783 | -0.016 | -0.1309 | No |
| 71 | Id2 | 9795 | -0.017 | -0.1310 | No |
| 72 | Slc22a5 | 10062 | -0.026 | -0.1439 | No |
| 73 | Add3 | 10237 | -0.033 | -0.1518 | No |
| 74 | Cdc6 | 10373 | -0.038 | -0.1577 | No |
| 75 | Itpk1 | 10400 | -0.039 | -0.1580 | No |
| 76 | Plaat3 | 10464 | -0.042 | -0.1601 | No |
| 77 | Dhcr7 | 10822 | -0.054 | -0.1768 | No |
| 78 | Batf | 10832 | -0.054 | -0.1758 | No |
| 79 | Cdc20 | 10973 | -0.058 | -0.1814 | No |
| 80 | Perp | 11000 | -0.059 | -0.1811 | No |
| 81 | Pdcd4 | 11139 | -0.062 | -0.1864 | No |
| 82 | Kcnk5 | 11195 | -0.064 | -0.1875 | No |
| 83 | Bcl2 | 11254 | -0.067 | -0.1887 | No |
| 84 | Rps6ka2 | 11453 | -0.075 | -0.1967 | No |
| 85 | Rabep1 | 11475 | -0.076 | -0.1957 | No |
| 86 | Slc7a5 | 11553 | -0.079 | -0.1975 | No |
| 87 | Dnajc1 | 11663 | -0.083 | -0.2008 | No |
| 88 | Cyp26b1 | 11814 | -0.089 | -0.2061 | No |
| 89 | Ret | 12236 | -0.108 | -0.2246 | No |
| 90 | Ppif | 12513 | -0.119 | -0.2355 | No |
| 91 | Abca3 | 12555 | -0.120 | -0.2344 | No |
| 92 | Stil | 12571 | -0.121 | -0.2319 | No |
| 93 | Dcxr | 12628 | -0.123 | -0.2314 | No |
| 94 | Ptger3 | 12827 | -0.131 | -0.2380 | No |
| 95 | Ugdh | 12833 | -0.131 | -0.2347 | No |
| 96 | Nrip1 | 12894 | -0.134 | -0.2341 | No |
| 97 | Atp2b4 | 12898 | -0.134 | -0.2306 | No |
| 98 | Lsr | 13093 | -0.140 | -0.2368 | No |
| 99 | Flnb | 13163 | -0.143 | -0.2364 | No |
| 100 | Plac1 | 13421 | -0.154 | -0.2453 | No |
| 101 | Sord | 13429 | -0.155 | -0.2415 | No |
| 102 | Nxt1 | 13804 | -0.171 | -0.2560 | No |
| 103 | Sult2b1 | 13850 | -0.173 | -0.2536 | No |
| 104 | Tpd52l1 | 14342 | -0.198 | -0.2733 | No |
| 105 | Ptpn6 | 14392 | -0.201 | -0.2703 | No |
| 106 | Rnaseh2a | 14721 | -0.217 | -0.2812 | No |
| 107 | Slc26a2 | 14855 | -0.224 | -0.2819 | Yes |
| 108 | Cox6c | 14908 | -0.227 | -0.2784 | Yes |
| 109 | Tnnc1 | 14960 | -0.230 | -0.2748 | Yes |
| 110 | Dynlt3 | 15073 | -0.234 | -0.2742 | Yes |
| 111 | Mocs2 | 15134 | -0.237 | -0.2709 | Yes |
| 112 | S100a9 | 15145 | -0.237 | -0.2650 | Yes |
| 113 | Scube2 | 15239 | -0.242 | -0.2632 | Yes |
| 114 | Il6st | 15400 | -0.249 | -0.2647 | Yes |
| 115 | Rab31 | 15659 | -0.261 | -0.2708 | Yes |
| 116 | Pdzk1 | 15716 | -0.265 | -0.2665 | Yes |
| 117 | Mapk13 | 15728 | -0.266 | -0.2598 | Yes |
| 118 | Ass1 | 15744 | -0.267 | -0.2534 | Yes |
| 119 | Mest | 15763 | -0.268 | -0.2471 | Yes |
| 120 | Opn3 | 15807 | -0.271 | -0.2420 | Yes |
| 121 | Fabp5 | 16030 | -0.288 | -0.2455 | Yes |
| 122 | Cish | 16310 | -0.304 | -0.2515 | Yes |
| 123 | Slc1a4 | 16366 | -0.308 | -0.2460 | Yes |
| 124 | Car2 | 16453 | -0.313 | -0.2420 | Yes |
| 125 | Sfn | 16622 | -0.325 | -0.2417 | Yes |
| 126 | Gfus | 16732 | -0.332 | -0.2383 | Yes |
| 127 | Wfs1 | 16762 | -0.334 | -0.2308 | Yes |
| 128 | Hmgcs2 | 17011 | -0.352 | -0.2340 | Yes |
| 129 | Zfp36 | 17091 | -0.358 | -0.2283 | Yes |
| 130 | Rapgefl1 | 17203 | -0.366 | -0.2241 | Yes |
| 131 | Igfbp4 | 17206 | -0.366 | -0.2143 | Yes |
| 132 | Ccnd1 | 17274 | -0.372 | -0.2077 | Yes |
| 133 | Dusp2 | 17382 | -0.381 | -0.2029 | Yes |
| 134 | Scarb1 | 17473 | -0.388 | -0.1970 | Yes |
| 135 | Xbp1 | 17691 | -0.407 | -0.1971 | Yes |
| 136 | Cd9 | 17711 | -0.409 | -0.1870 | Yes |
| 137 | Ltf | 17887 | -0.426 | -0.1844 | Yes |
| 138 | Blvrb | 17907 | -0.427 | -0.1739 | Yes |
| 139 | Plxnb1 | 17947 | -0.430 | -0.1643 | Yes |
| 140 | Homer2 | 18206 | -0.456 | -0.1651 | Yes |
| 141 | Slc27a2 | 18697 | -0.520 | -0.1760 | Yes |
| 142 | Olfm1 | 18713 | -0.523 | -0.1627 | Yes |
| 143 | Celsr2 | 18761 | -0.532 | -0.1507 | Yes |
| 144 | Arl3 | 19015 | -0.577 | -0.1481 | Yes |
| 145 | Papss2 | 19122 | -0.600 | -0.1373 | Yes |
| 146 | Slc2a8 | 19254 | -0.635 | -0.1268 | Yes |
| 147 | Frk | 19485 | -0.725 | -0.1190 | Yes |
| 148 | Il17rb | 19511 | -0.741 | -0.1003 | Yes |
| 149 | Gjb3 | 19659 | -0.878 | -0.0841 | Yes |
| 150 | Unc13b | 19692 | -0.941 | -0.0603 | Yes |
| 151 | Aldh3b1 | 19731 | -1.066 | -0.0335 | Yes |
| 152 | Gale | 19763 | -1.314 | 0.0004 | Yes |

