Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group1_versus_Group3.CMP_Pheno.cls#Group1_versus_Group3_repos
Phenotype	CMP_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.21026494
Normalized Enrichment Score (NES)	0.8314358
Nominal p-value	0.82306165
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Mmp2	25	0.934	0.0247	Yes
2	Comp	29	0.919	0.0500	Yes
3	Tgm2	270	0.610	0.0548	Yes
4	Nid2	387	0.562	0.0645	Yes
5	Fbn1	466	0.536	0.0754	Yes
6	Lamc1	512	0.525	0.0877	Yes
7	Dab2	568	0.509	0.0990	Yes
8	Thbs1	697	0.486	0.1060	Yes
9	Fgf2	705	0.485	0.1191	Yes
10	Fstl1	723	0.481	0.1316	Yes
11	Sgcb	1050	0.429	0.1269	Yes
12	Anpep	1069	0.426	0.1379	Yes
13	Tfpi2	1256	0.401	0.1396	Yes
14	Slit2	1275	0.400	0.1497	Yes
15	Copa	1317	0.396	0.1586	Yes
16	Col5a3	1407	0.382	0.1647	Yes
17	Postn	1506	0.372	0.1701	Yes
18	Dpysl3	1814	0.344	0.1640	Yes
19	Il6	1933	0.335	0.1673	Yes
20	Thbs2	1952	0.334	0.1757	Yes
21	Rhob	1957	0.333	0.1847	Yes
22	Itgb1	2053	0.326	0.1889	Yes
23	Dst	2155	0.318	0.1926	Yes
24	Sdc1	2294	0.309	0.1942	Yes
25	Fn1	2385	0.303	0.1980	Yes
26	Fas	2636	0.288	0.1933	Yes
27	Calu	2668	0.285	0.1996	Yes
28	Jun	2674	0.284	0.2073	Yes
29	Mmp14	2995	0.263	0.1983	Yes
30	Mcm7	3065	0.259	0.2020	Yes
31	Timp3	3164	0.254	0.2040	Yes
32	Tnc	3180	0.252	0.2103	Yes
33	P3h1	3462	0.235	0.2025	No
34	Fbln1	3614	0.227	0.2011	No
35	Basp1	3644	0.225	0.2059	No
36	Cap2	3846	0.215	0.2016	No
37	Fzd8	3909	0.212	0.2043	No
38	Notch2	3918	0.211	0.2098	No
39	Tpm2	4310	0.193	0.1952	No
40	Gja1	4785	0.171	0.1759	No
41	Sparc	4824	0.169	0.1786	No
42	Plod2	4940	0.163	0.1773	No
43	Tnfrsf12a	5209	0.151	0.1678	No
44	Flna	5404	0.141	0.1619	No
45	Edil3	5504	0.137	0.1606	No
46	Spp1	5670	0.131	0.1559	No
47	Nt5e	5800	0.126	0.1528	No
48	Col1a2	5858	0.124	0.1533	No
49	Tgfbi	5936	0.121	0.1528	No
50	Sfrp4	6299	0.110	0.1374	No
51	Il15	6510	0.101	0.1295	No
52	Lrp1	6795	0.090	0.1175	No
53	Cdh2	7012	0.083	0.1088	No
54	Vcam1	7842	0.052	0.0681	No
55	Fap	8099	0.043	0.0562	No
56	Itgb3	8227	0.038	0.0508	No
57	Adam12	8283	0.037	0.0491	No
58	Itga2	8888	0.014	0.0187	No
59	Col4a2	9031	0.009	0.0117	No
60	Efemp2	9032	0.009	0.0120	No
61	Tgfbr3	9180	0.004	0.0046	No
62	Col1a1	9280	0.000	-0.0004	No
63	Matn2	9619	-0.009	-0.0174	No
64	Pcolce	9760	-0.016	-0.0241	No
65	Cd44	9782	-0.016	-0.0247	No
66	Id2	9795	-0.017	-0.0249	No
67	Sgcd	9801	-0.017	-0.0246	No
68	Cadm1	9893	-0.020	-0.0287	No
69	Sat1	9948	-0.022	-0.0308	No
70	Vegfa	10036	-0.025	-0.0346	No
71	Pdgfrb	10086	-0.027	-0.0363	No
72	Wipf1	10100	-0.028	-0.0362	No
73	Pdlim4	10432	-0.040	-0.0519	No
74	Dcn	10434	-0.040	-0.0509	No
75	Bgn	10645	-0.047	-0.0603	No
76	Fbn2	10704	-0.049	-0.0618	No
77	Gem	10926	-0.057	-0.0715	No
78	Qsox1	11080	-0.060	-0.0776	No
79	Tagln	11373	-0.072	-0.0905	No
80	Ntm	11774	-0.088	-0.1084	No
81	Gpc1	11964	-0.096	-0.1154	No
82	Itgav	11973	-0.097	-0.1131	No
83	Gpx7	12012	-0.099	-0.1123	No
84	Lama2	12045	-0.100	-0.1112	No
85	Capg	12100	-0.102	-0.1111	No
86	Plod1	12254	-0.108	-0.1159	No
87	Col5a1	12554	-0.120	-0.1277	No
88	Col4a1	12586	-0.121	-0.1260	No
89	Itgb5	12598	-0.122	-0.1231	No
90	Lama1	12644	-0.124	-0.1220	No
91	Slc6a8	12976	-0.137	-0.1350	No
92	Loxl1	13037	-0.139	-0.1342	No
93	Pfn2	13083	-0.139	-0.1326	No
94	Tpm1	13299	-0.149	-0.1394	No
95	Ppib	13402	-0.153	-0.1404	No
96	Inhba	13733	-0.168	-0.1525	No
97	Itga5	13811	-0.172	-0.1517	No
98	Ecm1	13908	-0.176	-0.1517	No
99	Pmepa1	13933	-0.177	-0.1480	No
100	Sntb1	13947	-0.178	-0.1437	No
101	Cald1	13995	-0.181	-0.1410	No
102	Plaur	14288	-0.195	-0.1505	No
103	Colgalt1	14630	-0.213	-0.1620	No
104	Col12a1	15246	-0.242	-0.1866	No
105	Fstl3	15396	-0.249	-0.1873	No
106	Mest	15763	-0.268	-0.1984	No
107	Emp3	15791	-0.270	-0.1923	No
108	Plod3	15838	-0.274	-0.1870	No
109	Glipr1	16117	-0.292	-0.1931	No
110	Slit3	16315	-0.305	-0.1946	No
111	Mylk	16336	-0.306	-0.1871	No
112	Col16a1	16505	-0.317	-0.1869	No
113	Vegfc	16640	-0.327	-0.1847	No
114	Tgfb1	16909	-0.345	-0.1887	No
115	Lama3	17036	-0.354	-0.1853	No
116	Igfbp4	17206	-0.366	-0.1837	No
117	Vcan	17322	-0.376	-0.1791	No
118	Fuca1	17404	-0.383	-0.1726	No
119	Bmp1	17557	-0.395	-0.1694	No
120	Thy1	17651	-0.404	-0.1629	No
121	Tpm4	17655	-0.404	-0.1518	No
122	Cdh11	17663	-0.405	-0.1409	No
123	Ecm2	17911	-0.427	-0.1416	No
124	Magee1	17934	-0.429	-0.1308	No
125	Col5a2	17993	-0.434	-0.1217	No
126	Eno2	18034	-0.440	-0.1115	No
127	Spock1	18056	-0.441	-0.1003	No
128	Vim	18155	-0.450	-0.0928	No
129	Sfrp1	18182	-0.454	-0.0815	No
130	Serpine2	18354	-0.472	-0.0771	No
131	Abi3bp	18564	-0.502	-0.0738	No
132	Lgals1	18742	-0.530	-0.0681	No
133	Gadd45b	18787	-0.537	-0.0554	No
134	Gadd45a	19302	-0.655	-0.0634	No
135	Tnfaip3	19425	-0.702	-0.0501	No
136	Pvr	19504	-0.737	-0.0336	No
137	Col7a1	19571	-0.782	-0.0152	No
138	Serpinh1	19681	-0.913	0.0046	No