Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CMP.CMP_Pheno.cls#Group1_versus_Group3.CMP_Pheno.cls#Group1_versus_Group3_repos
Phenotype	CMP_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.24769662
Normalized Enrichment Score (NES)	-1.122454
Nominal p-value	0.2725451
FDR q-value	0.734035
FWER p-Value	0.973

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Mmp2	25	0.934	0.0278	No
2	Ppp3r1	297	0.596	0.0326	No
3	Gpx4	341	0.578	0.0484	No
4	Sptan1	845	0.462	0.0372	No
5	Krt18	932	0.447	0.0467	No
6	Brca1	1039	0.430	0.0547	No
7	Slc20a1	1310	0.397	0.0533	No
8	Il6	1933	0.335	0.0320	No
9	Rhob	1957	0.333	0.0412	No
10	Tap1	2130	0.321	0.0425	No
11	Casp2	2137	0.320	0.0521	No
12	Txnip	2260	0.312	0.0556	No
13	Madd	2279	0.310	0.0644	No
14	Tgfb2	2333	0.307	0.0712	No
15	Irf1	2401	0.302	0.0772	No
16	Timp2	2467	0.298	0.0832	No
17	Dffa	2469	0.298	0.0924	No
18	Dnm1l	2500	0.296	0.1001	No
19	Mcl1	2513	0.295	0.1087	No
20	Fas	2636	0.288	0.1115	No
21	Clu	2657	0.285	0.1193	No
22	Jun	2674	0.284	0.1274	No
23	Hmox1	2676	0.284	0.1361	No
24	Wee1	3001	0.263	0.1278	No
25	Cdk2	3028	0.261	0.1346	No
26	Timp3	3164	0.254	0.1357	No
27	Pea15a	3423	0.237	0.1299	No
28	Igf2r	3606	0.227	0.1277	No
29	Dpyd	3646	0.225	0.1327	No
30	Add1	3955	0.209	0.1236	No
31	F2r	4486	0.183	0.1023	No
32	Top2a	4492	0.183	0.1077	No
33	Il1b	4620	0.178	0.1068	No
34	Cdc25b	4839	0.168	0.1009	No
35	Ctnnb1	5048	0.158	0.0953	No
36	Tnfrsf12a	5209	0.151	0.0918	No
37	Bik	5345	0.144	0.0894	No
38	Fdxr	5540	0.136	0.0838	No
39	Cdkn1b	5586	0.134	0.0857	No
40	Dap3	6540	0.100	0.0402	No
41	Btg3	6589	0.098	0.0408	No
42	Cyld	6831	0.089	0.0313	No
43	Rhot2	7235	0.074	0.0131	No
44	Cav1	7385	0.068	0.0076	No
45	Pak1	7433	0.066	0.0073	No
46	Hgf	7638	0.058	-0.0013	No
47	Ptk2	7762	0.054	-0.0059	No
48	Rara	7801	0.053	-0.0061	No
49	Ank	7970	0.048	-0.0132	No
50	Xiap	7988	0.048	-0.0126	No
51	Ifngr1	8073	0.044	-0.0155	No
52	Gna15	8126	0.042	-0.0168	No
53	Casp3	8157	0.041	-0.0170	No
54	Mgmt	8206	0.039	-0.0183	No
55	Casp1	8209	0.039	-0.0171	No
56	Gstm2	8392	0.033	-0.0254	No
57	Etf1	8397	0.032	-0.0246	No
58	Cflar	8567	0.027	-0.0324	No
59	Rnasel	8661	0.023	-0.0364	No
60	Rela	8766	0.019	-0.0411	No
61	Psen2	8790	0.019	-0.0417	No
62	Isg20	9083	0.008	-0.0563	No
63	Tgfbr3	9180	0.004	-0.0611	No
64	Bcap31	9223	0.002	-0.0631	No
65	Bid	9420	-0.002	-0.0730	No
66	Dnaja1	9557	-0.007	-0.0798	No
67	Crebbp	9643	-0.010	-0.0838	No
68	Birc3	9692	-0.013	-0.0858	No
69	Cd44	9782	-0.016	-0.0899	No
70	Hmgb2	9913	-0.021	-0.0958	No
71	Sat1	9948	-0.022	-0.0969	No
72	Vdac2	10009	-0.025	-0.0992	No
73	Pdgfrb	10086	-0.027	-0.1022	No
74	Dcn	10434	-0.040	-0.1186	No
75	Sqstm1	10451	-0.041	-0.1181	No
76	Sc5d	10539	-0.044	-0.1212	No
77	Bgn	10645	-0.047	-0.1251	No
78	Erbb3	10722	-0.050	-0.1274	No
79	Nefh	10935	-0.058	-0.1364	No
80	Atf3	11014	-0.060	-0.1385	No
81	Pdcd4	11139	-0.062	-0.1429	No
82	Bnip3l	11189	-0.064	-0.1434	No
83	Gsr	11244	-0.066	-0.1441	No
84	Tspo	11714	-0.085	-0.1653	No
85	Ppt1	11734	-0.086	-0.1636	No
86	Psen1	12016	-0.099	-0.1748	No
87	Btg2	12017	-0.099	-0.1717	No
88	Cdkn1a	12166	-0.105	-0.1760	No
89	Dap	12277	-0.109	-0.1782	No
90	Rock1	12323	-0.111	-0.1771	No
91	Satb1	12902	-0.134	-0.2023	No
92	Ccnd2	12905	-0.134	-0.1983	No
93	App	12973	-0.137	-0.1974	No
94	Bcl10	13086	-0.139	-0.1988	No
95	Ifitm3	13165	-0.143	-0.1983	No
96	Casp7	13217	-0.146	-0.1963	No
97	H1f0	13350	-0.152	-0.1983	No
98	Bax	13473	-0.157	-0.1997	No
99	Nedd9	13551	-0.159	-0.1986	No
100	Dnajc3	13662	-0.165	-0.1991	No
101	Tnfsf10	14053	-0.183	-0.2132	No
102	Bcl2l1	14245	-0.193	-0.2170	No
103	Plcb2	14349	-0.198	-0.2160	No
104	Pmaip1	14623	-0.212	-0.2233	No
105	Bcl2l2	14856	-0.224	-0.2282	No
106	Casp8	15058	-0.233	-0.2311	No
107	Casp9	15184	-0.239	-0.2301	No
108	Bmf	15418	-0.250	-0.2341	No
109	Bcl2l11	15685	-0.263	-0.2395	Yes
110	Ppp2r5b	15701	-0.264	-0.2320	Yes
111	Smad7	15758	-0.268	-0.2265	Yes
112	Anxa1	15771	-0.269	-0.2188	Yes
113	Casp6	16004	-0.286	-0.2217	Yes
114	Lmna	16067	-0.290	-0.2158	Yes
115	Gsn	16348	-0.307	-0.2206	Yes
116	Gpx3	16352	-0.307	-0.2112	Yes
117	Sod2	16735	-0.332	-0.2203	Yes
118	Cd69	16936	-0.347	-0.2197	Yes
119	Sod1	17014	-0.352	-0.2126	Yes
120	Il18	17107	-0.359	-0.2061	Yes
121	Lgals3	17142	-0.361	-0.1966	Yes
122	Ccnd1	17274	-0.372	-0.1917	Yes
123	Lef1	17298	-0.373	-0.1813	Yes
124	Gpx1	17721	-0.411	-0.1900	Yes
125	Casp4	17818	-0.419	-0.1818	Yes
126	Ier3	17884	-0.426	-0.1718	Yes
127	Emp1	17916	-0.428	-0.1601	Yes
128	Eno2	18034	-0.440	-0.1524	Yes
129	Diablo	18062	-0.442	-0.1400	Yes
130	Cth	18304	-0.466	-0.1377	Yes
131	Retsat	18410	-0.477	-0.1282	Yes
132	Ebp	18753	-0.531	-0.1291	Yes
133	Gadd45b	18787	-0.537	-0.1140	Yes
134	Cd14	18844	-0.547	-0.0999	Yes
135	Cd38	19134	-0.602	-0.0958	Yes
136	Ddit3	19255	-0.636	-0.0821	Yes
137	Gadd45a	19302	-0.655	-0.0641	Yes
138	Aifm3	19317	-0.661	-0.0442	Yes
139	Gch1	19570	-0.782	-0.0327	Yes
140	Tnf	19766	-1.377	0.0003	Yes