Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group6_versus_Group8.Basophil_Pheno.cls #Group6_versus_Group8_repos
Phenotype	Basophil_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	0.2091114
Normalized Enrichment Score (NES)	0.85497624
Nominal p-value	0.6229839
FDR q-value	0.852511
FWER p-Value	0.999

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Traf1	52	1.061	0.0226	Yes
2	Gfpt2	232	0.785	0.0317	Yes
3	Cdkn1a	299	0.761	0.0463	Yes
4	Klf9	301	0.760	0.0645	Yes
5	Nr4a2	416	0.701	0.0751	Yes
6	Il15ra	537	0.636	0.0838	Yes
7	Trib1	999	0.550	0.0717	Yes
8	Nfkbie	1098	0.524	0.0789	Yes
9	Ppp1r15a	1100	0.524	0.0914	Yes
10	Pmepa1	1113	0.520	0.1033	Yes
11	Yrdc	1131	0.516	0.1147	Yes
12	Panx1	1186	0.505	0.1239	Yes
13	Irs2	1259	0.490	0.1317	Yes
14	Il7r	1288	0.485	0.1418	Yes
15	Ier3	1306	0.480	0.1524	Yes
16	Fosb	1378	0.470	0.1598	Yes
17	Fosl2	1487	0.451	0.1647	Yes
18	Plk2	1497	0.450	0.1750	Yes
19	Nfkb2	1552	0.442	0.1827	Yes
20	Nr4a3	1968	0.413	0.1699	Yes
21	Plau	1971	0.413	0.1797	Yes
22	Ccl5	2050	0.411	0.1853	Yes
23	Slc2a6	2261	0.396	0.1833	Yes
24	Serpinb8	2298	0.394	0.1908	Yes
25	Egr1	2701	0.349	0.1771	Yes
26	Mcl1	2930	0.323	0.1724	Yes
27	Slc2a3	3073	0.312	0.1721	Yes
28	Cd44	3109	0.309	0.1776	Yes
29	Spsb1	3276	0.298	0.1756	Yes
30	Plaur	3362	0.292	0.1780	Yes
31	Per1	3397	0.290	0.1831	Yes
32	Klf2	3468	0.285	0.1861	Yes
33	Id2	3550	0.279	0.1883	Yes
34	Slc16a6	3589	0.277	0.1929	Yes
35	Cxcl10	3597	0.276	0.1991	Yes
36	Fos	3622	0.274	0.2044	Yes
37	Kynu	3656	0.271	0.2091	Yes
38	Csf1	3908	0.259	0.2016	No
39	Btg3	4009	0.253	0.2022	No
40	Fosl1	4385	0.240	0.1874	No
41	Ptger4	4597	0.236	0.1815	No
42	B4galt5	4620	0.235	0.1859	No
43	Zfp36	4675	0.231	0.1885	No
44	Cd83	4751	0.227	0.1898	No
45	Nampt	4862	0.225	0.1892	No
46	Ifit2	5716	0.174	0.1466	No
47	Dusp1	6269	0.145	0.1199	No
48	Vegfa	6377	0.140	0.1174	No
49	Nr4a1	6524	0.132	0.1125	No
50	Cebpb	6551	0.131	0.1143	No
51	Tnf	6627	0.127	0.1132	No
52	Ccnd1	6644	0.126	0.1153	No
53	Tnfsf9	6675	0.125	0.1167	No
54	Rhob	6708	0.123	0.1179	No
55	Klf6	6824	0.117	0.1144	No
56	Nfat5	7256	0.096	0.0931	No
57	Cd69	7293	0.095	0.0934	No
58	Dnajb4	7471	0.086	0.0858	No
59	Junb	7474	0.086	0.0877	No
60	Dusp4	7743	0.074	0.0748	No
61	Rigi	7891	0.067	0.0684	No
62	Jun	8059	0.058	0.0606	No
63	Tnfaip8	8083	0.057	0.0607	No
64	Tubb2a	8120	0.055	0.0601	No
65	Bhlhe40	8339	0.045	0.0492	No
66	Ccrl2	8382	0.043	0.0479	No
67	Smad3	8452	0.039	0.0451	No
68	Tgif1	8505	0.037	0.0431	No
69	Atp2b1	8539	0.035	0.0422	No
70	Il6st	8601	0.032	0.0396	No
71	Ier5	8611	0.032	0.0399	No
72	Gpr183	8672	0.029	0.0373	No
73	Gem	8835	0.023	0.0289	No
74	Ldlr	8837	0.023	0.0294	No
75	Pdlim5	8949	0.018	0.0238	No
76	Sdc4	9003	0.016	0.0212	No
77	Hbegf	9057	0.013	0.0187	No
78	Icosl	9809	-0.004	-0.0224	No
79	Rnf19b	9905	-0.008	-0.0274	No
80	Fut4	9938	-0.009	-0.0290	No
81	Sod2	10139	-0.017	-0.0395	No
82	Zc3h12a	10337	-0.026	-0.0497	No
83	Gadd45a	10377	-0.028	-0.0512	No
84	Map3k8	10394	-0.028	-0.0514	No
85	Lamb3	10420	-0.030	-0.0520	No
86	Btg1	10567	-0.036	-0.0591	No
87	Tnfaip3	10591	-0.037	-0.0595	No
88	Map2k3	10812	-0.045	-0.0705	No
89	Nfkbia	10818	-0.046	-0.0697	No
90	Cd80	10963	-0.052	-0.0763	No
91	Maff	11117	-0.058	-0.0833	No
92	Zbtb10	11336	-0.066	-0.0937	No
93	Clcf1	11502	-0.073	-0.1009	No
94	Nfil3	11545	-0.075	-0.1015	No
95	Ets2	11917	-0.090	-0.1196	No
96	Tank	11935	-0.091	-0.1184	No
97	Ccnl1	12038	-0.096	-0.1216	No
98	Pfkfb3	12213	-0.104	-0.1287	No
99	Ptpre	12218	-0.104	-0.1264	No
100	Tnfrsf9	12260	-0.106	-0.1261	No
101	B4galt1	12293	-0.107	-0.1253	No
102	Plpp3	12326	-0.109	-0.1245	No
103	Ehd1	12332	-0.109	-0.1221	No
104	Sgk1	12345	-0.110	-0.1201	No
105	Rel	12535	-0.119	-0.1276	No
106	Sqstm1	12778	-0.130	-0.1378	No
107	Tap1	12900	-0.136	-0.1411	No
108	Dusp5	13109	-0.147	-0.1490	No
109	Mxd1	13186	-0.151	-0.1495	No
110	Irf1	13359	-0.160	-0.1551	No
111	Relb	13827	-0.185	-0.1763	No
112	Trip10	14070	-0.197	-0.1848	No
113	Klf4	14087	-0.198	-0.1809	No
114	Rcan1	14151	-0.201	-0.1796	No
115	Tnip2	14241	-0.206	-0.1795	No
116	Gadd45b	14247	-0.206	-0.1748	No
117	Btg2	14346	-0.212	-0.1751	No
118	Cflar	14372	-0.214	-0.1713	No
119	Sat1	14461	-0.219	-0.1709	No
120	Nfe2l2	14645	-0.230	-0.1754	No
121	Atf3	14655	-0.231	-0.1704	No
122	Phlda1	14798	-0.239	-0.1724	No
123	Tnip1	14824	-0.241	-0.1680	No
124	Tsc22d1	14854	-0.243	-0.1637	No
125	Ifih1	14927	-0.247	-0.1617	No
126	Litaf	15043	-0.255	-0.1619	No
127	Eif1	15094	-0.258	-0.1585	No
128	Olr1	15106	-0.259	-0.1528	No
129	Tnfaip2	15172	-0.262	-0.1501	No
130	Marcks	15318	-0.272	-0.1515	No
131	Myc	15669	-0.292	-0.1637	No
132	Ripk2	15722	-0.297	-0.1594	No
133	Pde4b	15733	-0.297	-0.1528	No
134	Tlr2	15803	-0.302	-0.1494	No
135	Bcl6	15804	-0.302	-0.1421	No
136	Dennd5a	15869	-0.307	-0.1382	No
137	F2rl1	15890	-0.309	-0.1319	No
138	Tiparp	16007	-0.312	-0.1308	No
139	Ier2	16016	-0.313	-0.1237	No
140	Gch1	16227	-0.330	-0.1273	No
141	Icam1	16326	-0.337	-0.1246	No
142	Kdm6b	16405	-0.341	-0.1207	No
143	Birc2	16972	-0.395	-0.1422	No
144	Stat5a	16984	-0.396	-0.1333	No
145	Nfkb1	17093	-0.409	-0.1294	No
146	Socs3	17142	-0.414	-0.1221	No
147	Bcl3	17207	-0.423	-0.1155	No
148	Hes1	17253	-0.428	-0.1077	No
149	Ninj1	17265	-0.430	-0.0979	No
150	Abca1	17431	-0.455	-0.0960	No
151	Il18	17456	-0.459	-0.0863	No
152	Plek	17472	-0.462	-0.0761	No
153	Ifngr2	17482	-0.463	-0.0654	No
154	Rela	17568	-0.480	-0.0586	No
155	Sphk1	17684	-0.501	-0.0528	No
156	Dusp2	17699	-0.504	-0.0415	No
157	Dram1	17702	-0.504	-0.0295	No
158	Pnrc1	17731	-0.509	-0.0188	No
159	Birc3	17998	-0.576	-0.0196	No
160	Snn	18001	-0.578	-0.0058	No
161	Klf10	18005	-0.578	0.0079	No
162	Cebpd	18048	-0.588	0.0197	No