Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group6_versus_Group8.Basophil_Pheno.cls #Group6_versus_Group8_repos
Phenotype	Basophil_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	5
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.2865664
Normalized Enrichment Score (NES)	-1.2795606
Nominal p-value	0.103658535
FDR q-value	0.38844913
FWER p-Value	0.811

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Cdkn1a	299	0.761	0.0080	No
2	Bik	316	0.758	0.0314	No
3	Sptan1	1012	0.547	0.0108	No
4	Nefh	1032	0.543	0.0272	No
5	Ier3	1306	0.480	0.0276	No
6	Pea15a	1402	0.464	0.0373	No
7	Timp3	1566	0.440	0.0424	No
8	Tgfbr3	1936	0.416	0.0355	No
9	Eno2	2029	0.411	0.0437	No
10	H1f0	2583	0.363	0.0250	No
11	Mcl1	2930	0.323	0.0164	No
12	Cd44	3109	0.309	0.0166	No
13	Casp6	3236	0.300	0.0193	No
14	Bcap31	3255	0.299	0.0279	No
15	Etf1	3480	0.284	0.0247	No
16	Cdc25b	3521	0.282	0.0315	No
17	Nedd9	3623	0.274	0.0348	No
18	Slc20a1	3770	0.269	0.0354	No
19	Bcl10	3851	0.263	0.0394	No
20	Tnfsf10	3867	0.262	0.0470	No
21	Brca1	3902	0.259	0.0534	No
22	Clu	3929	0.257	0.0603	No
23	Igf2r	3961	0.256	0.0667	No
24	Btg3	4009	0.253	0.0723	No
25	Lgals3	4222	0.249	0.0686	No
26	Top2a	5727	0.174	-0.0081	No
27	App	5940	0.162	-0.0145	No
28	Casp3	6032	0.157	-0.0145	No
29	Mgmt	6088	0.154	-0.0125	No
30	Sc5d	6213	0.148	-0.0146	No
31	Casp1	6266	0.145	-0.0128	No
32	Bcl2l1	6306	0.143	-0.0104	No
33	Tnf	6627	0.127	-0.0238	No
34	Ccnd1	6644	0.126	-0.0207	No
35	Rhob	6708	0.123	-0.0202	No
36	Gpx4	6784	0.120	-0.0204	No
37	Gsr	6976	0.111	-0.0273	No
38	Cd69	7293	0.095	-0.0416	No
39	Tgfb2	7370	0.092	-0.0428	No
40	Cdkn1b	7605	0.080	-0.0531	No
41	Ptk2	7686	0.076	-0.0550	No
42	Cd38	7780	0.072	-0.0578	No
43	Pdgfrb	7811	0.071	-0.0572	No
44	Dnajc3	8026	0.059	-0.0670	No
45	Jun	8059	0.058	-0.0669	No
46	Cth	8223	0.050	-0.0742	No
47	Madd	8265	0.048	-0.0749	No
48	Psen1	8440	0.040	-0.0832	No
49	Casp8	8711	0.028	-0.0971	No
50	Lef1	8856	0.022	-0.1042	No
51	Add1	9039	0.014	-0.1137	No
52	Dpyd	9157	0.009	-0.1198	No
53	Hmox1	9361	0.000	-0.1309	No
54	Aifm3	9382	0.000	-0.1320	No
55	Ppp3r1	9917	-0.008	-0.1610	No
56	Crebbp	10018	-0.012	-0.1661	No
57	Hmgb2	10061	-0.014	-0.1679	No
58	Sod2	10139	-0.017	-0.1716	No
59	F2r	10296	-0.024	-0.1794	No
60	Dnm1l	10319	-0.025	-0.1798	No
61	Gadd45a	10377	-0.028	-0.1820	No
62	Gsn	10990	-0.054	-0.2138	No
63	Casp4	11235	-0.061	-0.2252	No
64	Satb1	11316	-0.065	-0.2275	No
65	Pdcd4	11385	-0.068	-0.2290	No
66	Lmna	11419	-0.069	-0.2286	No
67	Casp2	11422	-0.070	-0.2265	No
68	Rara	11715	-0.082	-0.2398	No
69	Vdac2	11733	-0.083	-0.2381	No
70	Cyld	11815	-0.087	-0.2397	No
71	Fdxr	12009	-0.095	-0.2473	No
72	Ddit3	12143	-0.101	-0.2513	No
73	Dap3	12424	-0.113	-0.2630	No
74	Rnasel	12544	-0.120	-0.2657	No
75	Cav1	12617	-0.123	-0.2657	No
76	Sqstm1	12778	-0.130	-0.2703	No
77	Wee1	12862	-0.134	-0.2705	No
78	Tap1	12900	-0.136	-0.2682	No
79	Krt18	13014	-0.142	-0.2698	No
80	Plcb2	13122	-0.148	-0.2710	No
81	Rock1	13261	-0.155	-0.2736	No
82	Gpx1	13302	-0.157	-0.2707	No
83	Irf1	13359	-0.160	-0.2687	No
84	Timp2	13687	-0.177	-0.2809	Yes
85	Casp9	13722	-0.178	-0.2771	Yes
86	Dffa	13730	-0.179	-0.2717	Yes
87	Fasl	13807	-0.184	-0.2700	Yes
88	Gna15	13872	-0.187	-0.2675	Yes
89	Bax	13889	-0.187	-0.2624	Yes
90	Erbb3	13931	-0.188	-0.2586	Yes
91	Smad7	14067	-0.196	-0.2597	Yes
92	Xiap	14088	-0.198	-0.2545	Yes
93	Ctnnb1	14146	-0.201	-0.2512	Yes
94	Gadd45b	14247	-0.206	-0.2501	Yes
95	Bcl2l11	14324	-0.211	-0.2475	Yes
96	Btg2	14346	-0.212	-0.2418	Yes
97	Cflar	14372	-0.214	-0.2363	Yes
98	Sat1	14461	-0.219	-0.2341	Yes
99	Psen2	14504	-0.222	-0.2293	Yes
100	Atf3	14655	-0.231	-0.2302	Yes
101	Rhot2	14678	-0.232	-0.2239	Yes
102	Casp7	15126	-0.260	-0.2401	Yes
103	Emp1	15200	-0.265	-0.2356	Yes
104	Ccnd2	15316	-0.272	-0.2332	Yes
105	Dnaja1	15399	-0.278	-0.2288	Yes
106	Bcl2l2	15621	-0.289	-0.2316	Yes
107	Sod1	15639	-0.291	-0.2233	Yes
108	Tnfrsf12a	15846	-0.305	-0.2248	Yes
109	Pmaip1	15877	-0.308	-0.2165	Yes
110	Anxa1	15957	-0.309	-0.2110	Yes
111	Fas	16074	-0.317	-0.2072	Yes
112	Gch1	16227	-0.330	-0.2049	Yes
113	Bmf	16319	-0.336	-0.1992	Yes
114	Ppt1	16474	-0.348	-0.1964	Yes
115	Hgf	16545	-0.354	-0.1889	Yes
116	Dap	16679	-0.366	-0.1845	Yes
117	Ifitm3	16768	-0.376	-0.1773	Yes
118	Tspo	16876	-0.385	-0.1708	Yes
119	Bid	16930	-0.391	-0.1612	Yes
120	Ebp	17026	-0.401	-0.1536	Yes
121	Isg20	17123	-0.412	-0.1457	Yes
122	Txnip	17131	-0.413	-0.1328	Yes
123	Diablo	17152	-0.415	-0.1207	Yes
124	Ank	17333	-0.440	-0.1164	Yes
125	Il18	17456	-0.459	-0.1084	Yes
126	Ifngr1	17508	-0.470	-0.0961	Yes
127	Rela	17568	-0.480	-0.0840	Yes
128	Cdk2	17603	-0.486	-0.0703	Yes
129	Ppp2r5b	17718	-0.507	-0.0603	Yes
130	Retsat	17737	-0.510	-0.0450	Yes
131	Bnip3l	17768	-0.515	-0.0301	Yes
132	Birc3	17998	-0.576	-0.0242	Yes
133	Pak1	18191	-0.658	-0.0136	Yes
134	Mmp2	18318	-0.795	0.0049	Yes