Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group3_versus_Group4.Basophil_Pheno.cls #Group3_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.36763316
Normalized Enrichment Score (NES)	1.4427885
Nominal p-value	0.028225806
FDR q-value	0.70178413
FWER p-Value	0.544

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Matn2	174	0.762	0.0151	Yes
2	Nid2	269	0.704	0.0327	Yes
3	Serpinh1	378	0.651	0.0479	Yes
4	Cald1	380	0.650	0.0688	Yes
5	Cap2	608	0.570	0.0749	Yes
6	Comp	715	0.547	0.0867	Yes
7	Fn1	752	0.539	0.1022	Yes
8	Thy1	762	0.536	0.1191	Yes
9	Fap	790	0.529	0.1347	Yes
10	Thbs2	955	0.498	0.1418	Yes
11	Sdc4	1100	0.478	0.1494	Yes
12	Lamc1	1355	0.443	0.1498	Yes
13	Pfn2	1390	0.440	0.1622	Yes
14	Tnfaip3	1406	0.437	0.1755	Yes
15	Abi3bp	1496	0.424	0.1843	Yes
16	Adam12	1509	0.422	0.1973	Yes
17	Il15	1569	0.416	0.2076	Yes
18	Mest	1799	0.391	0.2077	Yes
19	Gem	1983	0.373	0.2097	Yes
20	Vcan	2037	0.370	0.2188	Yes
21	Cdh2	2078	0.367	0.2285	Yes
22	Fuca1	2218	0.352	0.2323	Yes
23	Sparc	2226	0.352	0.2433	Yes
24	Slc6a8	2271	0.346	0.2521	Yes
25	Fbln1	2350	0.339	0.2588	Yes
26	Tgfbi	2421	0.336	0.2658	Yes
27	Tagln	2428	0.336	0.2763	Yes
28	Col12a1	2524	0.329	0.2818	Yes
29	Anpep	2582	0.325	0.2892	Yes
30	Plaur	2583	0.325	0.2997	Yes
31	Itga5	2592	0.324	0.3097	Yes
32	Gadd45a	2605	0.322	0.3195	Yes
33	Capg	2651	0.318	0.3273	Yes
34	Fas	2729	0.313	0.3332	Yes
35	Vim	2744	0.312	0.3425	Yes
36	Dab2	2830	0.307	0.3478	Yes
37	Id2	2986	0.296	0.3489	Yes
38	Edil3	3064	0.293	0.3542	Yes
39	Cadm1	3077	0.293	0.3630	Yes
40	Qsox1	3254	0.281	0.3625	Yes
41	Cd44	3400	0.270	0.3633	Yes
42	Sfrp4	3478	0.265	0.3676	Yes
43	Cdh11	4158	0.226	0.3378	No
44	Fgf2	4337	0.215	0.3350	No
45	Sdc1	4425	0.211	0.3371	No
46	Ecm2	4488	0.208	0.3404	No
47	Rhob	4638	0.201	0.3388	No
48	Jun	4741	0.195	0.3395	No
49	Tpm1	5469	0.160	0.3049	No
50	Itga2	5600	0.153	0.3028	No
51	Timp3	5765	0.146	0.2985	No
52	Gja1	5983	0.137	0.2911	No
53	Colgalt1	6070	0.133	0.2907	No
54	Calu	6164	0.130	0.2898	No
55	Flna	6265	0.125	0.2884	No
56	Pvr	6321	0.123	0.2894	No
57	Eno2	6380	0.120	0.2901	No
58	Itgb1	6416	0.119	0.2920	No
59	Sgcb	6541	0.113	0.2889	No
60	Mylk	6593	0.111	0.2897	No
61	Itgav	6606	0.111	0.2926	No
62	Wipf1	6608	0.110	0.2961	No
63	Pcolce	6764	0.103	0.2910	No
64	Pdgfrb	6771	0.102	0.2940	No
65	Tpm4	6787	0.102	0.2964	No
66	Vegfc	6796	0.102	0.2993	No
67	Ppib	6900	0.097	0.2968	No
68	Itgb5	7010	0.092	0.2938	No
69	Col11a1	7157	0.087	0.2887	No
70	Spp1	7225	0.087	0.2878	No
71	Col4a2	7352	0.083	0.2836	No
72	P3h1	7415	0.080	0.2828	No
73	Col4a1	7450	0.078	0.2835	No
74	Gpc1	7457	0.078	0.2857	No
75	Mmp14	7604	0.073	0.2800	No
76	Basp1	7655	0.071	0.2796	No
77	Igfbp4	7708	0.068	0.2789	No
78	Mmp2	8192	0.050	0.2541	No
79	Pmepa1	8246	0.048	0.2528	No
80	Sntb1	8564	0.034	0.2365	No
81	Tgfb1	8671	0.029	0.2317	No
82	Col5a1	9009	0.017	0.2138	No
83	Tgfbr3	9215	0.009	0.2029	No
84	Spock1	9499	0.000	0.1874	No
85	Postn	9802	-0.010	0.1712	No
86	Ecm1	9804	-0.010	0.1715	No
87	Notch2	10230	-0.024	0.1490	No
88	Magee1	10260	-0.026	0.1483	No
89	Fzd8	10407	-0.032	0.1413	No
90	Fstl1	10416	-0.032	0.1419	No
91	Lgals1	10441	-0.033	0.1417	No
92	Plod1	10843	-0.048	0.1213	No
93	Tpm2	11228	-0.061	0.1023	No
94	Fbn1	11670	-0.077	0.0807	No
95	Lrp1	11701	-0.079	0.0816	No
96	Tgm2	11842	-0.084	0.0766	No
97	Emp3	12371	-0.106	0.0512	No
98	Lama2	12449	-0.109	0.0505	No
99	Sgcd	13276	-0.144	0.0100	No
100	Tnfrsf12a	13426	-0.150	0.0067	No
101	Col1a2	13676	-0.163	-0.0017	No
102	Col7a1	13995	-0.178	-0.0133	No
103	Plod3	14130	-0.185	-0.0147	No
104	Lama3	14376	-0.198	-0.0217	No
105	Vcam1	14397	-0.199	-0.0163	No
106	Gadd45b	14602	-0.207	-0.0208	No
107	Nt5e	14612	-0.208	-0.0145	No
108	Slit2	14639	-0.209	-0.0092	No
109	Fstl3	14876	-0.223	-0.0149	No
110	Col1a1	15074	-0.235	-0.0181	No
111	Vegfa	15409	-0.253	-0.0282	No
112	Glipr1	15657	-0.271	-0.0329	No
113	Slit3	15742	-0.275	-0.0286	No
114	Serpine2	15785	-0.278	-0.0219	No
115	Copa	15936	-0.290	-0.0208	No
116	Mcm7	16351	-0.318	-0.0331	No
117	Gpx7	16515	-0.331	-0.0313	No
118	Bmp1	16604	-0.340	-0.0252	No
119	Dst	16751	-0.351	-0.0218	No
120	Plod2	16953	-0.368	-0.0209	No
121	Dpysl3	17264	-0.408	-0.0246	No
122	Thbs1	17479	-0.436	-0.0222	No
123	Sat1	17564	-0.451	-0.0122	No
124	Col16a1	17951	-0.527	-0.0163	No
125	Itgb3	17986	-0.534	-0.0009	No
126	Ntm	18311	-0.740	0.0053	No