DatasetCLP.Basophil_Pheno.cls
#Group2_versus_Group4.Basophil_Pheno.cls
#Group2_versus_Group4_repos
PhenotypeBasophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
Enrichment Score (ES)-0.31997994
Normalized Enrichment Score (NES)-1.1575466
Nominal p-value0.2723658
FDR q-value1.0
FWER p-Value0.968
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Pfkp8660.508-0.0061No
2Gsr10630.4780.0219No
3Prnp11890.4600.0523No
4Ndufs212180.4570.0877No
5Stk2517780.3940.0892No
6Lsp118610.3850.1158No
7G6pdx18700.3850.1465No
8Egln219340.3800.1738No
9Oxsr139640.2290.0818No
10Txnrd153270.1570.0203No
11Prdx156580.1420.0138No
12Gclm60500.1210.0023No
13Scaf463410.106-0.0049No
14Junb69740.079-0.0329No
15Prdx274820.056-0.0560No
16Sod275090.055-0.0530No
17Ptpa75160.054-0.0490No
18Atox180950.029-0.0781No
19Mgst182380.022-0.0840No
20Mbp85020.012-0.0974No
21Sbno29500-0.028-0.1494No
22Hhex9574-0.031-0.1509No
23Txn110252-0.062-0.1828No
24Abcc110441-0.069-0.1874No
25Gclc10447-0.069-0.1821No
26Glrx10548-0.075-0.1815No
27Msra10931-0.092-0.1949No
28Ercc212095-0.142-0.2468No
29Cdkn2d12189-0.146-0.2401No
30Fes12554-0.163-0.2467No
31Ipcef113485-0.208-0.2805No
32Glrx213881-0.226-0.2838No
33Hmox214547-0.261-0.2988Yes
34Txnrd214578-0.263-0.2792Yes
35Ndufa614719-0.271-0.2649Yes
36Srxn115056-0.290-0.2597Yes
37Cat15417-0.311-0.2542Yes
38Gpx416076-0.355-0.2613Yes
39Prdx616514-0.393-0.2533Yes
40Sod116618-0.402-0.2264Yes
41Selenos17023-0.446-0.2123Yes
42Lamtor517625-0.526-0.2024Yes
43Pdlim117671-0.536-0.1615Yes
44Prdx417674-0.536-0.1182Yes
45Ftl117785-0.559-0.0790Yes
46Mpo18124-0.674-0.0429Yes
47Nqo118199-0.7210.0114Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY: Random ES distribution   
Gene set null distribution of ES for HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY