Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group2_versus_Group4.Basophil_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	0.26925895
Normalized Enrichment Score (NES)	1.2083817
Nominal p-value	0.14570858
FDR q-value	0.92984855
FWER p-Value	0.917

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Chst3	106	0.798	0.0141	Yes
2	Sdc4	174	0.727	0.0285	Yes
3	Anxa2	239	0.680	0.0419	Yes
4	Dtna	258	0.670	0.0576	Yes
5	Tgfb3	306	0.653	0.0713	Yes
6	Vldlr	404	0.616	0.0813	Yes
7	Rora	452	0.596	0.0936	Yes
8	Cdkn1b	528	0.575	0.1038	Yes
9	Tpd52	540	0.571	0.1174	Yes
10	Tgfbi	570	0.565	0.1299	Yes
11	Sap30	617	0.554	0.1412	Yes
12	Ccng2	709	0.536	0.1495	Yes
13	Pdgfb	746	0.530	0.1608	Yes
14	Gpc3	830	0.514	0.1690	Yes
15	Fos	854	0.510	0.1805	Yes
16	Pfkp	866	0.508	0.1925	Yes
17	Bhlhe40	920	0.497	0.2020	Yes
18	Sdc2	963	0.491	0.2119	Yes
19	Tgm2	1024	0.483	0.2207	Yes
20	S100a4	1038	0.481	0.2319	Yes
21	Csrp2	1164	0.462	0.2366	Yes
22	Gpi1	1299	0.446	0.2403	Yes
23	Myh9	1306	0.445	0.2511	Yes
24	Hdlbp	1352	0.438	0.2596	Yes
25	Jun	1518	0.422	0.2610	Yes
26	Ppargc1a	1646	0.408	0.2642	Yes
27	Ak4	2167	0.361	0.2447	Yes
28	Pam	2217	0.356	0.2509	Yes
29	Ndst2	2321	0.346	0.2539	Yes
30	Egfr	2387	0.339	0.2588	Yes
31	Pgm2	2392	0.339	0.2670	Yes
32	Ankzf1	2824	0.307	0.2510	Yes
33	Klhl24	2865	0.304	0.2564	Yes
34	B4galnt2	2926	0.299	0.2605	Yes
35	Vhl	2930	0.299	0.2678	Yes
36	Dusp1	3108	0.286	0.2652	Yes
37	Ndst1	3164	0.282	0.2693	Yes
38	Atp7a	3435	0.266	0.2611	No
39	Klf7	3449	0.265	0.2670	No
40	Akap12	3554	0.260	0.2678	No
41	Atf3	3724	0.246	0.2646	No
42	Casp6	3760	0.243	0.2688	No
43	Nfil3	4523	0.200	0.2320	No
44	Gaa	4798	0.186	0.2216	No
45	Nr3c1	4932	0.177	0.2187	No
46	Plin2	4957	0.176	0.2218	No
47	Slc6a6	5081	0.169	0.2193	No
48	Cdkn1c	5298	0.158	0.2114	No
49	Ugp2	5302	0.158	0.2151	No
50	Kif5a	5315	0.157	0.2184	No
51	Tnfaip3	5318	0.157	0.2222	No
52	Cp	5320	0.157	0.2260	No
53	Map3k1	5583	0.144	0.2153	No
54	Nedd4l	5625	0.143	0.2166	No
55	Ndrg1	5649	0.142	0.2189	No
56	Klf6	5799	0.134	0.2140	No
57	Col5a1	5814	0.133	0.2166	No
58	Mt1	5818	0.133	0.2197	No
59	Ddit4	5907	0.129	0.2181	No
60	Maff	6059	0.120	0.2128	No
61	Foxo3	6400	0.103	0.1968	No
62	Hspa5	6913	0.082	0.1708	No
63	Kdm3a	6928	0.082	0.1720	No
64	Phkg1	7206	0.070	0.1586	No
65	Irs2	7260	0.067	0.1574	No
66	Prkca	7319	0.064	0.1558	No
67	P4ha1	7346	0.063	0.1559	No
68	B3galt6	7470	0.056	0.1506	No
69	Gbe1	7522	0.054	0.1491	No
70	Bcl2	7553	0.052	0.1488	No
71	Ids	7559	0.052	0.1498	No
72	Hk2	7631	0.049	0.1471	No
73	Eno3	7892	0.038	0.1338	No
74	Wsb1	8020	0.032	0.1277	No
75	Plaur	8145	0.027	0.1215	No
76	Pfkfb3	8163	0.025	0.1212	No
77	Prdx5	8193	0.024	0.1202	No
78	Errfi1	8227	0.023	0.1190	No
79	Ets1	8255	0.022	0.1181	No
80	Pdk1	8318	0.019	0.1151	No
81	Pim1	8425	0.015	0.1097	No
82	Ier3	8942	-0.004	0.0815	No
83	Lxn	9017	-0.008	0.0777	No
84	Tpi1	9085	-0.011	0.0743	No
85	Galk1	9172	-0.014	0.0699	No
86	Ext1	9420	-0.025	0.0570	No
87	Slc37a4	9445	-0.026	0.0563	No
88	Hexa	9462	-0.027	0.0561	No
89	Aldoa	9594	-0.032	0.0497	No
90	Xpnpep1	9600	-0.032	0.0503	No
91	Gys1	10016	-0.051	0.0288	No
92	Fam162a	10186	-0.058	0.0210	No
93	Sdc3	10407	-0.068	0.0106	No
94	Eno1b	10439	-0.069	0.0106	No
95	Gcnt2	10512	-0.073	0.0085	No
96	Glrx	10548	-0.075	0.0084	No
97	Zfp292	10745	-0.084	-0.0002	No
98	Scarb1	10839	-0.088	-0.0031	No
99	Plac8	11018	-0.096	-0.0105	No
100	Car12	11095	-0.099	-0.0122	No
101	Hk1	11132	-0.101	-0.0117	No
102	Cavin1	11238	-0.104	-0.0148	No
103	Noct	11368	-0.109	-0.0192	No
104	Selenbp1	11471	-0.113	-0.0219	No
105	Fosl2	11544	-0.117	-0.0230	No
106	Btg1	11669	-0.122	-0.0267	No
107	Ppp1r15a	11694	-0.123	-0.0250	No
108	Cdkn1a	11830	-0.130	-0.0292	No
109	Tiparp	11863	-0.131	-0.0276	No
110	Aldoc	11934	-0.134	-0.0281	No
111	Ppfia4	12124	-0.143	-0.0349	No
112	Pygm	12348	-0.152	-0.0434	No
113	Large1	12712	-0.171	-0.0590	No
114	P4ha2	12760	-0.173	-0.0573	No
115	Slc2a1	12813	-0.176	-0.0557	No
116	Rbpj	12856	-0.179	-0.0536	No
117	Zfp36	12880	-0.180	-0.0503	No
118	Eno2	13070	-0.189	-0.0560	No
119	Jmjd6	13137	-0.192	-0.0548	No
120	Chst2	13468	-0.207	-0.0678	No
121	Slc2a5	13744	-0.219	-0.0774	No
122	Pklr	13819	-0.222	-0.0759	No
123	Vegfa	13826	-0.222	-0.0707	No
124	Slc25a1	13874	-0.225	-0.0677	No
125	Cav1	13976	-0.231	-0.0675	No
126	Ero1a	14004	-0.232	-0.0632	No
127	Hmox1	14017	-0.233	-0.0580	No
128	Tes	14045	-0.234	-0.0537	No
129	Gpc1	14055	-0.234	-0.0483	No
130	Pfkl	14281	-0.246	-0.0545	No
131	Fbp1	14402	-0.253	-0.0548	No
132	Pgk1	14492	-0.258	-0.0532	No
133	Cxcr4	14718	-0.271	-0.0588	No
134	Pdk3	14779	-0.273	-0.0553	No
135	Rragd	14840	-0.277	-0.0517	No
136	Mif	14945	-0.283	-0.0503	No
137	Gapdhs	14988	-0.286	-0.0455	No
138	Inha	15241	-0.300	-0.0519	No
139	Ldha	15245	-0.300	-0.0445	No
140	Nagk	15312	-0.304	-0.0406	No
141	Bnip3l	15484	-0.315	-0.0421	No
142	Adora2b	15717	-0.330	-0.0466	No
143	Isg20	15740	-0.332	-0.0395	No
144	Ilvbl	15962	-0.347	-0.0430	No
145	Mxi1	16006	-0.351	-0.0366	No
146	Pgm1	16029	-0.352	-0.0290	No
147	Gck	16187	-0.365	-0.0285	No
148	Tpst2	16268	-0.371	-0.0237	No
149	Ampd3	16296	-0.373	-0.0159	No
150	Sult2b1	16434	-0.385	-0.0138	No
151	Pnrc1	16830	-0.423	-0.0249	No
152	Siah2	16905	-0.431	-0.0183	No
153	Hs3st1	16922	-0.433	-0.0083	No
154	Grhpr	17067	-0.449	-0.0051	No
155	Slc2a3	17666	-0.535	-0.0245	No
156	Ddit3	17713	-0.547	-0.0134	No
157	Angptl4	17775	-0.558	-0.0028	No
158	Gpc4	18183	-0.713	-0.0074	No
159	Cited2	18279	-0.789	0.0071	No