Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group2_versus_Group4.Basophil_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	0.23594572
Normalized Enrichment Score (NES)	1.0695908
Nominal p-value	0.3478261
FDR q-value	1.0
FWER p-Value	0.995

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Casp9	198	0.709	0.0070	Yes
2	Pclo	283	0.663	0.0191	Yes
3	Olr1	340	0.639	0.0320	Yes
4	Prkcd	373	0.628	0.0461	Yes
5	Gnai3	381	0.626	0.0614	Yes
6	Fdx1	392	0.622	0.0765	Yes
7	Clu	408	0.612	0.0911	Yes
8	Mmp8	587	0.561	0.0954	Yes
9	Pdgfb	746	0.530	0.1001	Yes
10	Gngt2	805	0.519	0.1100	Yes
11	Lap3	863	0.508	0.1196	Yes
12	Me1	897	0.503	0.1304	Yes
13	Gnb4	978	0.489	0.1384	Yes
14	Irf1	992	0.487	0.1499	Yes
15	Itgam	994	0.487	0.1621	Yes
16	Kcnip3	1097	0.472	0.1683	Yes
17	Dock9	1354	0.438	0.1653	Yes
18	Lck	1395	0.434	0.1740	Yes
19	Lrp1	1471	0.427	0.1807	Yes
20	Lgmn	1609	0.412	0.1835	Yes
21	Ctss	1633	0.409	0.1925	Yes
22	Ppp2cb	1667	0.406	0.2009	Yes
23	Klkb1	1734	0.399	0.2073	Yes
24	Serpinc1	1835	0.388	0.2116	Yes
25	Usp8	2045	0.369	0.2094	Yes
26	Stx4a	2071	0.367	0.2173	Yes
27	Cd46	2073	0.367	0.2264	Yes
28	Vcpip1	2153	0.362	0.2312	Yes
29	Sirt6	2230	0.355	0.2359	Yes
30	Prss36	2393	0.339	0.2356	No
31	Cebpb	2634	0.320	0.2305	No
32	Zfpm2	2706	0.314	0.2345	No
33	C2	2917	0.299	0.2305	No
34	Cdk5r1	3155	0.283	0.2246	No
35	L3mbtl4	3309	0.274	0.2231	No
36	Ang	3472	0.264	0.2209	No
37	Raf1	3515	0.262	0.2252	No
38	Rbsn	3567	0.258	0.2289	No
39	Casp4	3822	0.239	0.2210	No
40	Casp1	4153	0.220	0.2084	No
41	Fn1	4252	0.215	0.2084	No
42	Grb2	4395	0.207	0.2059	No
43	Gng2	4652	0.194	0.1967	No
44	Col4a2	4682	0.193	0.2000	No
45	Anxa5	4727	0.190	0.2023	No
46	Cd36	5010	0.172	0.1912	No
47	Gca	5041	0.171	0.1939	No
48	Cblb	5078	0.169	0.1962	No
49	Gmfb	5119	0.167	0.1982	No
50	Ppp4c	5299	0.158	0.1923	No
51	Tnfaip3	5318	0.157	0.1953	No
52	Cp	5320	0.157	0.1992	No
53	Rnf4	5602	0.144	0.1874	No
54	Casp3	5790	0.134	0.1805	No
55	Pik3r5	5845	0.132	0.1809	No
56	Usp16	5852	0.131	0.1838	No
57	Ccl5	5985	0.124	0.1797	No
58	Maff	6059	0.120	0.1787	No
59	Jak2	6119	0.117	0.1784	No
60	Plscr1	6529	0.096	0.1585	No
61	Gata3	6713	0.092	0.1507	No
62	Ctsc	6735	0.090	0.1519	No
63	Hspa5	6913	0.082	0.1442	No
64	Src	6914	0.082	0.1463	No
65	Ehd1	6956	0.080	0.1461	No
66	Was	7366	0.062	0.1252	No
67	Lcp2	7395	0.060	0.1252	No
68	F10	7580	0.051	0.1164	No
69	Cr2	7581	0.051	0.1177	No
70	Hspa1a	7659	0.048	0.1147	No
71	Pik3ca	7663	0.047	0.1157	No
72	Fcer1g	7715	0.045	0.1140	No
73	Usp14	8039	0.031	0.0971	No
74	Atox1	8095	0.029	0.0948	No
75	Ctsl	8109	0.028	0.0948	No
76	Dpp4	8131	0.027	0.0944	No
77	Plaur	8145	0.027	0.0943	No
78	Cdh13	8282	0.021	0.0874	No
79	Pim1	8425	0.015	0.0800	No
80	Usp15	8509	0.011	0.0757	No
81	Kif2a	8780	0.000	0.0609	No
82	Ltf	8797	0.000	0.0601	No
83	Rasgrp1	8910	-0.003	0.0540	No
84	Zeb1	9002	-0.008	0.0492	No
85	Lamp2	9373	-0.023	0.0295	No
86	Dyrk2	9496	-0.028	0.0235	No
87	Xpnpep1	9600	-0.032	0.0187	No
88	Dock4	9806	-0.041	0.0085	No
89	Ctsh	10211	-0.059	-0.0121	No
90	Timp2	10248	-0.061	-0.0126	No
91	Gnai2	10249	-0.061	-0.0110	No
92	Prep	10297	-0.064	-0.0120	No
93	Pcsk9	10620	-0.078	-0.0277	No
94	Gp1ba	10733	-0.083	-0.0317	No
95	Mmp14	10979	-0.094	-0.0428	No
96	Psen1	10995	-0.094	-0.0412	No
97	Pla2g4a	11063	-0.098	-0.0424	No
98	Ctsb	11068	-0.098	-0.0402	No
99	Cpm	11140	-0.101	-0.0415	No
100	Akap10	11332	-0.108	-0.0493	No
101	Calm3	11508	-0.115	-0.0560	No
102	Ctsd	11728	-0.124	-0.0649	No
103	Kcnip2	11854	-0.131	-0.0684	No
104	Notch4	12623	-0.166	-0.1063	No
105	Fyn	12653	-0.168	-0.1037	No
106	Irf7	12686	-0.169	-0.1012	No
107	Dgkh	12744	-0.173	-0.1000	No
108	Lta4h	12746	-0.173	-0.0957	No
109	Hnf4a	12791	-0.175	-0.0937	No
110	Sh2b3	12803	-0.176	-0.0899	No
111	Calm1	12964	-0.184	-0.0940	No
112	Lyn	13053	-0.188	-0.0941	No
113	Rce1	13367	-0.204	-0.1062	No
114	Dock10	13576	-0.212	-0.1122	No
115	C3	13589	-0.213	-0.1075	No
116	Gpd2	13932	-0.228	-0.1205	No
117	Plek	14264	-0.245	-0.1325	No
118	Dusp6	14435	-0.254	-0.1354	No
119	Prcp	14652	-0.268	-0.1405	No
120	S100a9	14740	-0.271	-0.1384	No
121	Gnb2	14792	-0.274	-0.1343	No
122	Dusp5	14836	-0.277	-0.1297	No
123	Cpq	15199	-0.298	-0.1421	No
124	Csrp1	15502	-0.316	-0.1507	No
125	Cfb	15570	-0.320	-0.1463	No
126	Irf2	15827	-0.338	-0.1518	No
127	F8	15865	-0.341	-0.1453	No
128	F5	15926	-0.345	-0.1399	No
129	Lgals3	15946	-0.347	-0.1322	No
130	Casp7	16016	-0.352	-0.1272	No
131	Car2	16052	-0.353	-0.1202	No
132	Brpf3	16099	-0.357	-0.1138	No
133	Prdm4	16382	-0.380	-0.1197	No
134	Lipa	16632	-0.403	-0.1232	No
135	Gp9	16703	-0.410	-0.1167	No
136	Rhog	16825	-0.422	-0.1127	No
137	Ctso	16908	-0.431	-0.1064	No
138	Adam9	17075	-0.449	-0.1042	No
139	Phex	17104	-0.452	-0.0943	No
140	Spock2	17303	-0.473	-0.0933	No
141	S100a13	17331	-0.477	-0.0828	No
142	Psmb9	17404	-0.489	-0.0744	No
143	Kynu	17461	-0.499	-0.0650	No
144	Pdp1	17496	-0.505	-0.0541	No
145	Actn2	17546	-0.513	-0.0439	No
146	Msrb1	17820	-0.567	-0.0446	No
147	Rabif	17821	-0.567	-0.0304	No
148	Pik3cg	17959	-0.606	-0.0227	No
149	Pfn1	17982	-0.614	-0.0084	No
150	Mmp15	17997	-0.616	0.0063	No
151	Dgkg	18066	-0.644	0.0187	No