Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group2_versus_Group3.Basophil_Pheno.cls #Group2_versus_Group3_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	-0.26925886
Normalized Enrichment Score (NES)	-1.0100482
Nominal p-value	0.45435685
FDR q-value	0.76585746
FWER p-Value	0.995

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fosb	20	0.928	0.0228	No
2	Abca1	113	0.733	0.0367	No
3	F2rl1	185	0.672	0.0502	No
4	Fos	335	0.582	0.0570	No
5	Ifih1	591	0.511	0.0562	No
6	Mcl1	622	0.501	0.0675	No
7	Socs3	680	0.488	0.0770	No
8	B4galt5	1287	0.403	0.0541	No
9	Nfil3	1307	0.400	0.0634	No
10	Ifit2	1367	0.392	0.0703	No
11	Irf1	1593	0.371	0.0676	No
12	Tgif1	1800	0.354	0.0654	No
13	Rnf19b	1965	0.339	0.0652	No
14	Ier5	2030	0.332	0.0702	No
15	Tsc22d1	2382	0.307	0.0589	No
16	Tnip2	2493	0.298	0.0605	No
17	Dusp1	2497	0.298	0.0681	No
18	Serpinb8	2788	0.276	0.0593	No
19	Jun	2863	0.271	0.0622	No
20	Rela	2938	0.264	0.0650	No
21	Gadd45b	3001	0.260	0.0683	No
22	Olr1	3040	0.257	0.0728	No
23	Bcl6	3145	0.250	0.0736	No
24	Ccl5	3403	0.234	0.0655	No
25	Nfe2l2	3573	0.224	0.0620	No
26	Cdkn1a	3579	0.224	0.0675	No
27	Sat1	3669	0.218	0.0683	No
28	Map2k3	3882	0.207	0.0620	No
29	Trip10	3927	0.204	0.0649	No
30	Sgk1	4073	0.196	0.0620	No
31	Il6st	4342	0.181	0.0520	No
32	Panx1	4356	0.180	0.0559	No
33	Atf3	4426	0.177	0.0567	No
34	Spsb1	4474	0.174	0.0586	No
35	Ccnl1	4669	0.165	0.0522	No
36	Cxcl10	4749	0.161	0.0521	No
37	Klf10	4883	0.156	0.0488	No
38	Nfkb2	5281	0.138	0.0306	No
39	Maff	5296	0.137	0.0334	No
40	Plau	5414	0.131	0.0303	No
41	Tubb2a	5474	0.129	0.0304	No
42	Zbtb10	5577	0.124	0.0280	No
43	Bhlhe40	5651	0.120	0.0271	No
44	Slc2a6	5678	0.119	0.0288	No
45	Junb	5804	0.113	0.0248	No
46	Nampt	5862	0.110	0.0245	No
47	Sdc4	6019	0.103	0.0186	No
48	Rigi	6107	0.099	0.0164	No
49	Vegfa	6301	0.091	0.0082	No
50	Hes1	6304	0.091	0.0104	No
51	Plk2	6330	0.090	0.0114	No
52	Ier3	6445	0.085	0.0073	No
53	Birc3	6518	0.081	0.0055	No
54	Cebpb	6617	0.077	0.0021	No
55	Fosl2	6945	0.065	-0.0141	No
56	Smad3	6985	0.063	-0.0146	No
57	Icosl	7536	0.039	-0.0438	No
58	Tnfaip8	7537	0.039	-0.0428	No
59	Nfkb1	7623	0.034	-0.0466	No
60	Hbegf	7677	0.032	-0.0486	No
61	Plpp3	7874	0.023	-0.0588	No
62	Dennd5a	7876	0.023	-0.0582	No
63	Egr1	7932	0.022	-0.0607	No
64	Btg1	7941	0.022	-0.0606	No
65	Gfpt2	7943	0.021	-0.0601	No
66	Zfp36	7945	0.021	-0.0596	No
67	Tlr2	7999	0.019	-0.0620	No
68	Nr4a3	8085	0.015	-0.0663	No
69	Pfkfb3	8123	0.013	-0.0680	No
70	Snn	8132	0.013	-0.0681	No
71	Atp2b1	8300	0.006	-0.0771	No
72	Eif1	8334	0.005	-0.0788	No
73	Klf6	8448	0.000	-0.0850	No
74	Bcl3	8671	-0.009	-0.0969	No
75	Cflar	8820	-0.015	-0.1046	No
76	Tnip1	8932	-0.019	-0.1102	No
77	Klf2	8937	-0.019	-0.1099	No
78	Il7r	9230	-0.032	-0.1251	No
79	Ifngr2	9273	-0.034	-0.1266	No
80	Pdlim5	9401	-0.039	-0.1325	No
81	B4galt1	9492	-0.042	-0.1363	No
82	Rel	9538	-0.045	-0.1377	No
83	Il18	9564	-0.045	-0.1379	No
84	Ehd1	9685	-0.050	-0.1432	No
85	Sphk1	9821	-0.056	-0.1491	No
86	Klf9	9935	-0.061	-0.1537	No
87	Nr4a2	10056	-0.066	-0.1586	No
88	Tiparp	10164	-0.071	-0.1627	No
89	Per1	10187	-0.072	-0.1620	No
90	Nfat5	10468	-0.085	-0.1752	No
91	Ptger4	10652	-0.092	-0.1828	No
92	Dusp2	10893	-0.103	-0.1933	No
93	Btg2	10922	-0.104	-0.1922	No
94	Ccnd1	11013	-0.108	-0.1943	No
95	Cd83	11456	-0.127	-0.2153	No
96	Ppp1r15a	11744	-0.140	-0.2274	No
97	Trib1	11773	-0.142	-0.2253	No
98	Tank	11799	-0.143	-0.2229	No
99	Btg3	11843	-0.145	-0.2216	No
100	Yrdc	12021	-0.153	-0.2273	No
101	Klf4	12047	-0.154	-0.2247	No
102	Pde4b	12059	-0.154	-0.2214	No
103	Birc2	12152	-0.158	-0.2223	No
104	Litaf	12274	-0.164	-0.2247	No
105	Stat5a	12576	-0.180	-0.2366	No
106	Icam1	12897	-0.196	-0.2490	No
107	Rhob	13267	-0.215	-0.2637	Yes
108	Relb	13328	-0.218	-0.2614	Yes
109	Irs2	13331	-0.218	-0.2558	Yes
110	Myc	13350	-0.219	-0.2512	Yes
111	Tap1	13371	-0.220	-0.2466	Yes
112	Tnfaip3	13484	-0.227	-0.2469	Yes
113	Fut4	13544	-0.230	-0.2442	Yes
114	Dusp4	13551	-0.230	-0.2386	Yes
115	Nr4a1	13689	-0.236	-0.2400	Yes
116	Dusp5	13747	-0.239	-0.2369	Yes
117	Ripk2	13794	-0.242	-0.2332	Yes
118	Ptpre	13852	-0.245	-0.2300	Yes
119	Slc16a6	14089	-0.256	-0.2363	Yes
120	Plaur	14102	-0.257	-0.2303	Yes
121	Kdm6b	14111	-0.257	-0.2241	Yes
122	Ldlr	14203	-0.262	-0.2224	Yes
123	Sod2	14215	-0.263	-0.2162	Yes
124	Ninj1	14253	-0.265	-0.2114	Yes
125	Cd69	14465	-0.278	-0.2158	Yes
126	Cd80	14500	-0.280	-0.2104	Yes
127	Ets2	14532	-0.281	-0.2049	Yes
128	Phlda1	14583	-0.284	-0.2003	Yes
129	Clcf1	14716	-0.291	-0.2000	Yes
130	Ier2	14767	-0.294	-0.1951	Yes
131	Pnrc1	14907	-0.303	-0.1949	Yes
132	Cd44	15000	-0.309	-0.1920	Yes
133	Pmepa1	15012	-0.310	-0.1846	Yes
134	Map3k8	15049	-0.312	-0.1785	Yes
135	Dnajb4	15158	-0.319	-0.1762	Yes
136	Zc3h12a	15184	-0.321	-0.1693	Yes
137	Fosl1	15199	-0.322	-0.1618	Yes
138	Gpr183	15297	-0.328	-0.1586	Yes
139	Tnfaip2	15298	-0.328	-0.1502	Yes
140	Nfkbie	15546	-0.345	-0.1548	Yes
141	Ccrl2	16082	-0.387	-0.1741	Yes
142	Csf1	16095	-0.389	-0.1648	Yes
143	Sqstm1	16276	-0.404	-0.1642	Yes
144	Tnfsf9	16472	-0.421	-0.1640	Yes
145	Rcan1	16498	-0.424	-0.1544	Yes
146	Dram1	16704	-0.446	-0.1541	Yes
147	Marcks	16797	-0.456	-0.1474	Yes
148	Nfkbia	17009	-0.478	-0.1466	Yes
149	Plek	17017	-0.478	-0.1347	Yes
150	Gch1	17228	-0.504	-0.1332	Yes
151	Traf1	17279	-0.511	-0.1227	Yes
152	Tnfrsf9	17441	-0.542	-0.1176	Yes
153	Id2	17578	-0.562	-0.1105	Yes
154	Kynu	17642	-0.571	-0.0992	Yes
155	Lamb3	17711	-0.584	-0.0879	Yes
156	Mxd1	17721	-0.587	-0.0733	Yes
157	Cebpd	17780	-0.600	-0.0609	Yes
158	Gem	17878	-0.624	-0.0502	Yes
159	Slc2a3	17882	-0.624	-0.0342	Yes
160	Il15ra	18049	-0.681	-0.0257	Yes
161	Tnf	18056	-0.686	-0.0084	Yes
162	Gadd45a	18381	-1.070	0.0015	Yes