Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group2_versus_Group3.Basophil_Pheno.cls #Group2_versus_Group3_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.20403811
Normalized Enrichment Score (NES)	-0.87647325
Nominal p-value	0.8308668
FDR q-value	0.7803571
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fas	55	0.810	0.0237	No
2	Tgm2	665	0.492	0.0066	No
3	Sgcd	825	0.466	0.0132	No
4	Calu	900	0.455	0.0242	No
5	Mcm7	904	0.455	0.0390	No
6	Vcam1	1057	0.432	0.0449	No
7	Magee1	1124	0.423	0.0553	No
8	Tgfbi	1148	0.420	0.0679	No
9	Lrp1	1237	0.409	0.0765	No
10	Thbs1	1368	0.392	0.0823	No
11	Col16a1	1476	0.381	0.0891	No
12	Dpysl3	1780	0.356	0.0842	No
13	Tnfrsf12a	1832	0.350	0.0930	No
14	Itgb3	2060	0.330	0.0915	No
15	Dst	2174	0.322	0.0959	No
16	Copa	2253	0.317	0.1021	No
17	Fbn1	2254	0.317	0.1125	No
18	Bmp1	2483	0.299	0.1099	No
19	Spock1	2748	0.279	0.1046	No
20	Jun	2863	0.271	0.1073	No
21	Gadd45b	3001	0.260	0.1084	No
22	Gpx7	3446	0.232	0.0918	No
23	Sat1	3669	0.218	0.0868	No
24	Edil3	3817	0.210	0.0857	No
25	Matn2	3964	0.202	0.0844	No
26	Ntm	3984	0.200	0.0899	No
27	Col4a1	4017	0.198	0.0947	No
28	Itgb1	4100	0.194	0.0966	No
29	Tagln	4596	0.169	0.0751	No
30	Col5a1	4677	0.165	0.0762	No
31	Plod2	4740	0.162	0.0781	No
32	Col1a2	4846	0.157	0.0775	No
33	Qsox1	4926	0.155	0.0783	No
34	Itgav	4959	0.153	0.0816	No
35	Gja1	5066	0.148	0.0807	No
36	Notch2	5080	0.148	0.0849	No
37	Comp	5195	0.142	0.0833	No
38	Itga2	5226	0.140	0.0863	No
39	Serpine2	5347	0.134	0.0841	No
40	Col7a1	5628	0.122	0.0728	No
41	Col4a2	5649	0.121	0.0757	No
42	Cadm1	5844	0.111	0.0688	No
43	Sdc4	6019	0.103	0.0627	No
44	Vegfa	6301	0.091	0.0503	No
45	Vim	6556	0.080	0.0390	No
46	P3h1	6590	0.078	0.0398	No
47	Sfrp4	6747	0.072	0.0336	No
48	Lamc1	6780	0.071	0.0342	No
49	Lama2	7123	0.057	0.0174	No
50	Mylk	7142	0.056	0.0183	No
51	Cdh11	7288	0.050	0.0120	No
52	Col11a1	7896	0.022	-0.0205	No
53	Plod1	8200	0.010	-0.0367	No
54	Fgf2	8340	0.004	-0.0442	No
55	Pdgfrb	8356	0.004	-0.0449	No
56	Thbs2	8526	-0.002	-0.0540	No
57	Lgals1	8639	-0.007	-0.0599	No
58	Fstl3	8716	-0.011	-0.0637	No
59	Pcolce	8922	-0.019	-0.0743	No
60	Fap	9031	-0.023	-0.0795	No
61	Plod3	9047	-0.024	-0.0795	No
62	Flna	9616	-0.047	-0.1090	No
63	Slit2	9664	-0.049	-0.1100	No
64	Sdc1	9686	-0.050	-0.1095	No
65	Tpm4	9712	-0.051	-0.1092	No
66	Spp1	10016	-0.064	-0.1236	No
67	Dab2	10122	-0.069	-0.1271	No
68	Nt5e	10476	-0.085	-0.1436	No
69	Col1a1	10519	-0.087	-0.1430	No
70	Vegfc	10743	-0.096	-0.1521	No
71	Slit3	10791	-0.098	-0.1514	No
72	Tgfbr3	10920	-0.104	-0.1550	No
73	Fuca1	11132	-0.113	-0.1628	No
74	Sntb1	11333	-0.121	-0.1697	No
75	Glipr1	11435	-0.126	-0.1711	No
76	Mest	11482	-0.129	-0.1694	No
77	Fstl1	11604	-0.134	-0.1716	No
78	Basp1	11839	-0.144	-0.1796	No
79	Postn	11907	-0.148	-0.1784	No
80	Abi3bp	12208	-0.162	-0.1895	No
81	Mmp14	12292	-0.165	-0.1886	No
82	Sgcb	12392	-0.171	-0.1884	No
83	Il15	12480	-0.175	-0.1873	No
84	Igfbp4	12715	-0.186	-0.1940	No
85	Ppib	12762	-0.189	-0.1903	No
86	Lama3	12846	-0.194	-0.1884	No
87	Emp3	13015	-0.203	-0.1909	No
88	Cdh2	13256	-0.215	-0.1970	Yes
89	Rhob	13267	-0.215	-0.1904	Yes
90	Vcan	13413	-0.223	-0.1910	Yes
91	Mmp2	13435	-0.224	-0.1847	Yes
92	Tnfaip3	13484	-0.227	-0.1799	Yes
93	Ecm1	13753	-0.240	-0.1866	Yes
94	Colgalt1	13890	-0.246	-0.1860	Yes
95	Itgb5	13910	-0.248	-0.1788	Yes
96	Plaur	14102	-0.257	-0.1808	Yes
97	Wipf1	14214	-0.263	-0.1782	Yes
98	Tgfb1	14256	-0.265	-0.1717	Yes
99	Ecm2	14304	-0.268	-0.1655	Yes
100	Fbln1	14310	-0.268	-0.1569	Yes
101	Capg	14459	-0.278	-0.1558	Yes
102	Pvr	14461	-0.278	-0.1467	Yes
103	Col12a1	14554	-0.283	-0.1424	Yes
104	Tpm1	14691	-0.290	-0.1403	Yes
105	Gpc1	14771	-0.295	-0.1349	Yes
106	Cd44	15000	-0.309	-0.1372	Yes
107	Pmepa1	15012	-0.310	-0.1276	Yes
108	Adam12	15385	-0.334	-0.1369	Yes
109	Timp3	15565	-0.346	-0.1353	Yes
110	Pfn2	15684	-0.355	-0.1301	Yes
111	Eno2	15728	-0.359	-0.1206	Yes
112	Fn1	16050	-0.383	-0.1255	Yes
113	Tpm2	16072	-0.387	-0.1139	Yes
114	Serpinh1	16087	-0.388	-0.1019	Yes
115	Slc6a8	16505	-0.425	-0.1107	Yes
116	Sparc	16812	-0.458	-0.1123	Yes
117	Fzd8	16890	-0.467	-0.1011	Yes
118	Nid2	16905	-0.468	-0.0865	Yes
119	Thy1	17052	-0.483	-0.0785	Yes
120	Id2	17578	-0.562	-0.0887	Yes
121	Cald1	17587	-0.563	-0.0706	Yes
122	Itga5	17643	-0.571	-0.0548	Yes
123	Cap2	17688	-0.580	-0.0381	Yes
124	Gem	17878	-0.624	-0.0278	Yes
125	Anpep	17968	-0.651	-0.0112	Yes
126	Gadd45a	18381	-1.070	0.0015	Yes