Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group1_versus_Group4.Basophil_Pheno.cls #Group1_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	0.24824864
Normalized Enrichment Score (NES)	1.126954
Nominal p-value	0.19791667
FDR q-value	0.636294
FWER p-Value	0.989

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sdc4	6	1.325	0.0317	Yes
2	Ak4	12	1.188	0.0601	Yes
3	Tgfb3	78	0.870	0.0776	Yes
4	Sdc2	245	0.686	0.0851	Yes
5	Tgm2	341	0.635	0.0952	Yes
6	Chst3	463	0.596	0.1030	Yes
7	Slc2a5	721	0.535	0.1018	Yes
8	Fam162a	785	0.520	0.1109	Yes
9	Pgm2	804	0.516	0.1224	Yes
10	Jun	915	0.498	0.1284	Yes
11	Rora	1009	0.485	0.1351	Yes
12	Hdlbp	1200	0.454	0.1356	Yes
13	Errfi1	1305	0.440	0.1406	Yes
14	Fos	1371	0.431	0.1474	Yes
15	Gaa	1661	0.403	0.1413	Yes
16	Pdgfb	1670	0.402	0.1506	Yes
17	Myh9	1683	0.402	0.1596	Yes
18	Kif5a	1719	0.399	0.1674	Yes
19	Plaur	1771	0.392	0.1740	Yes
20	Pam	1891	0.384	0.1768	Yes
21	Vldlr	1921	0.381	0.1844	Yes
22	Ndst1	1989	0.374	0.1898	Yes
23	Anxa2	2023	0.372	0.1970	Yes
24	Dusp1	2050	0.371	0.2045	Yes
25	S100a4	2348	0.345	0.1966	Yes
26	Foxo3	2368	0.344	0.2039	Yes
27	Akap12	2373	0.344	0.2119	Yes
28	Ndrg1	2379	0.343	0.2200	Yes
29	Gcnt2	2402	0.342	0.2270	Yes
30	Cdkn1b	2533	0.330	0.2279	Yes
31	B4galnt2	2687	0.323	0.2273	Yes
32	Pygm	2804	0.314	0.2285	Yes
33	Col5a1	3182	0.286	0.2148	Yes
34	Bcl2	3193	0.285	0.2211	Yes
35	Atf3	3208	0.285	0.2272	Yes
36	Map3k1	3284	0.280	0.2299	Yes
37	Ext1	3425	0.269	0.2287	Yes
38	Gbe1	3451	0.267	0.2338	Yes
39	Gpi1	3562	0.260	0.2341	Yes
40	Fbp1	3699	0.251	0.2327	Yes
41	Sap30	3701	0.251	0.2387	Yes
42	Klhl24	3898	0.240	0.2337	Yes
43	Cdkn1c	3919	0.238	0.2384	Yes
44	Sult2b1	4066	0.229	0.2359	Yes
45	Bnip3l	4085	0.227	0.2404	Yes
46	Rbpj	4122	0.225	0.2439	Yes
47	Tgfbi	4142	0.224	0.2482	Yes
48	Bhlhe40	4328	0.216	0.2433	No
49	Pfkfb3	4443	0.212	0.2422	No
50	Irs2	4607	0.203	0.2382	No
51	Gpc3	4648	0.201	0.2408	No
52	Cp	4870	0.188	0.2333	No
53	Tpd52	4944	0.183	0.2337	No
54	Ddit4	4961	0.181	0.2372	No
55	Ankzf1	5002	0.180	0.2393	No
56	Hk2	5218	0.167	0.2316	No
57	Chst2	5606	0.152	0.2140	No
58	Ndst2	5768	0.143	0.2087	No
59	P4ha2	5781	0.142	0.2114	No
60	Ero1a	5913	0.136	0.2076	No
61	Hs3st1	5928	0.136	0.2101	No
62	Ccng2	5938	0.135	0.2128	No
63	Wsb1	6125	0.126	0.2057	No
64	Vhl	6340	0.116	0.1968	No
65	Maff	6610	0.103	0.1845	No
66	Atp7a	6711	0.098	0.1814	No
67	Ppargc1a	6718	0.098	0.1835	No
68	Csrp2	6726	0.098	0.1854	No
69	Noct	6990	0.085	0.1731	No
70	Slc6a6	7080	0.082	0.1702	No
71	Eno2	7564	0.061	0.1452	No
72	Slc37a4	7714	0.055	0.1383	No
73	Nfil3	7744	0.054	0.1381	No
74	Cavin1	8087	0.040	0.1203	No
75	Pfkp	8136	0.038	0.1186	No
76	Hk1	8408	0.027	0.1044	No
77	Jmjd6	8752	0.013	0.0859	No
78	Tpi1	8997	0.002	0.0726	No
79	Plin2	9394	-0.012	0.0512	No
80	Kdm3a	9482	-0.015	0.0468	No
81	Vegfa	9496	-0.016	0.0464	No
82	Aldoc	9636	-0.021	0.0393	No
83	Btg1	9668	-0.022	0.0382	No
84	Ppp1r15a	9765	-0.026	0.0335	No
85	Gck	9767	-0.027	0.0341	No
86	Slc2a3	9771	-0.027	0.0346	No
87	Ugp2	9797	-0.028	0.0339	No
88	Prkca	9974	-0.034	0.0251	No
89	Large1	10128	-0.041	0.0177	No
90	Pim1	10188	-0.044	0.0155	No
91	Gpc1	10280	-0.048	0.0117	No
92	Eno3	10289	-0.048	0.0124	No
93	Nedd4l	10317	-0.049	0.0121	No
94	Ids	10487	-0.057	0.0043	No
95	Mxi1	10650	-0.064	-0.0031	No
96	Tes	10700	-0.066	-0.0042	No
97	Pgm1	10761	-0.069	-0.0058	No
98	Sdc3	10805	-0.071	-0.0064	No
99	Zfp292	11075	-0.082	-0.0192	No
100	Car12	11118	-0.084	-0.0195	No
101	Slc2a1	11145	-0.085	-0.0188	No
102	Ampd3	11165	-0.086	-0.0178	No
103	Cxcr4	11308	-0.093	-0.0234	No
104	Ppfia4	11336	-0.094	-0.0226	No
105	Inha	11357	-0.095	-0.0214	No
106	Eno1b	11501	-0.102	-0.0267	No
107	Dtna	11531	-0.102	-0.0258	No
108	Ets1	11609	-0.104	-0.0275	No
109	Zfp36	11863	-0.116	-0.0386	No
110	Tiparp	11903	-0.117	-0.0379	No
111	Casp6	12079	-0.125	-0.0445	No
112	Phkg1	12144	-0.128	-0.0449	No
113	Scarb1	12219	-0.130	-0.0458	No
114	Rragd	12335	-0.137	-0.0488	No
115	Pgk1	12415	-0.141	-0.0497	No
116	Prdx5	12514	-0.146	-0.0516	No
117	Grhpr	12709	-0.155	-0.0585	No
118	Lxn	12773	-0.157	-0.0581	No
119	Xpnpep1	12797	-0.159	-0.0555	No
120	Hexa	12986	-0.169	-0.0618	No
121	Nr3c1	13202	-0.180	-0.0692	No
122	Selenbp1	13401	-0.190	-0.0755	No
123	Plac8	13598	-0.199	-0.0814	No
124	Cited2	13677	-0.204	-0.0807	No
125	Egfr	13692	-0.205	-0.0765	No
126	Aldoa	13908	-0.213	-0.0831	No
127	Angptl4	14159	-0.226	-0.0914	No
128	Gys1	14457	-0.243	-0.1018	No
129	Tpst2	14481	-0.244	-0.0971	No
130	Mt1	14514	-0.247	-0.0929	No
131	Pdk1	14702	-0.256	-0.0970	No
132	Klf7	14873	-0.267	-0.0998	No
133	Nagk	14885	-0.268	-0.0940	No
134	Fosl2	14905	-0.270	-0.0885	No
135	Isg20	15022	-0.274	-0.0882	No
136	B3galt6	15122	-0.282	-0.0869	No
137	Ier3	15369	-0.300	-0.0931	No
138	Ilvbl	15539	-0.311	-0.0948	No
139	Cav1	15990	-0.344	-0.1112	No
140	Hspa5	16237	-0.362	-0.1159	No
141	P4ha1	16303	-0.369	-0.1105	No
142	Pdk3	16389	-0.376	-0.1061	No
143	Gapdhs	16399	-0.377	-0.0975	No
144	Cdkn1a	16688	-0.407	-0.1034	No
145	Glrx	16881	-0.426	-0.1037	No
146	Pklr	16996	-0.443	-0.0992	No
147	Hmox1	17006	-0.444	-0.0890	No
148	Slc25a1	17091	-0.456	-0.0825	No
149	Galk1	17212	-0.469	-0.0778	No
150	Pnrc1	17336	-0.486	-0.0728	No
151	Klf6	17472	-0.513	-0.0678	No
152	Adora2b	17492	-0.516	-0.0564	No
153	Siah2	17518	-0.520	-0.0452	No
154	Ddit3	17644	-0.543	-0.0389	No
155	Gpc4	17683	-0.553	-0.0276	No
156	Pfkl	17725	-0.561	-0.0163	No
157	Tnfaip3	18088	-0.664	-0.0201	No
158	Mif	18250	-0.757	-0.0106	No
159	Ldha	18285	-0.795	0.0067	No