Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group1_versus_Group3.Basophil_Pheno.cls #Group1_versus_Group3_repos
Phenotype	Basophil_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.2911627
Normalized Enrichment Score (NES)	-1.1804308
Nominal p-value	0.16346154
FDR q-value	0.63632536
FWER p-Value	0.926

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Thbs1	139	0.697	0.0128	No
2	Tgm2	181	0.659	0.0298	No
3	Dpysl3	237	0.633	0.0453	No
4	Sdc4	300	0.609	0.0597	No
5	Serpine2	312	0.604	0.0767	No
6	Col1a2	541	0.530	0.0798	No
7	Vegfa	574	0.524	0.0933	No
8	Itgb3	635	0.510	0.1050	No
9	Col11a1	726	0.493	0.1144	No
10	Lrp1	794	0.481	0.1248	No
11	Timp3	1259	0.406	0.1113	No
12	Vcam1	1274	0.405	0.1224	No
13	Sgcd	1391	0.392	0.1275	No
14	Jun	1468	0.383	0.1346	No
15	Col16a1	1481	0.382	0.1451	No
16	Ntm	1526	0.377	0.1537	No
17	Bmp1	1677	0.362	0.1561	No
18	Col5a1	1756	0.355	0.1622	No
19	Gpx7	1839	0.345	0.1678	No
20	Itgb5	1907	0.338	0.1740	No
21	Edil3	1909	0.338	0.1838	No
22	Dst	2159	0.318	0.1795	No
23	Plod2	2323	0.305	0.1795	No
24	Copa	2413	0.298	0.1833	No
25	Magee1	2673	0.280	0.1773	No
26	Postn	2987	0.258	0.1678	No
27	Notch2	3139	0.249	0.1668	No
28	Rhob	3495	0.225	0.1539	No
29	Lamc1	3602	0.220	0.1546	No
30	Mmp2	3660	0.217	0.1578	No
31	Mcm7	3766	0.212	0.1582	No
32	Calu	3853	0.206	0.1595	No
33	Sdc1	3991	0.199	0.1579	No
34	Mylk	4036	0.197	0.1612	No
35	Itga2	4400	0.177	0.1465	No
36	Itgb1	4490	0.172	0.1467	No
37	Cdh11	4774	0.158	0.1359	No
38	Col4a2	4814	0.157	0.1383	No
39	Pmepa1	4888	0.154	0.1388	No
40	Sntb1	4924	0.153	0.1414	No
41	Flna	5265	0.137	0.1268	No
42	Lama2	5740	0.116	0.1043	No
43	Col7a1	5928	0.108	0.0972	No
44	Fzd8	6289	0.092	0.0802	No
45	Tpm2	6407	0.087	0.0763	No
46	Slc6a8	7003	0.065	0.0457	No
47	Plaur	7381	0.050	0.0265	No
48	Lama3	7668	0.038	0.0120	No
49	Gja1	7738	0.036	0.0093	No
50	Tagln	7870	0.030	0.0030	No
51	Qsox1	7920	0.029	0.0012	No
52	Plod1	7998	0.026	-0.0023	No
53	Tpm1	8318	0.013	-0.0194	No
54	Tgfbi	8514	0.006	-0.0299	No
55	Fap	8604	0.003	-0.0346	No
56	Spock1	8706	0.000	-0.0402	No
57	Tnfrsf12a	8856	-0.007	-0.0481	No
58	Gadd45a	8973	-0.012	-0.0541	No
59	Fgf2	9088	-0.016	-0.0599	No
60	Plod3	9098	-0.017	-0.0599	No
61	Itgav	9119	-0.017	-0.0605	No
62	Ecm1	9159	-0.019	-0.0620	No
63	Gem	9444	-0.029	-0.0767	No
64	Slit3	9518	-0.032	-0.0798	No
65	Sfrp4	9608	-0.035	-0.0836	No
66	Basp1	9747	-0.041	-0.0900	No
67	P3h1	9877	-0.046	-0.0957	No
68	Cald1	9921	-0.048	-0.0966	No
69	Wipf1	9966	-0.049	-0.0976	No
70	Il15	9969	-0.050	-0.0963	No
71	Nt5e	9973	-0.050	-0.0950	No
72	Eno2	10369	-0.065	-0.1147	No
73	Ppib	10417	-0.067	-0.1153	No
74	Fuca1	10467	-0.069	-0.1159	No
75	Pcolce	10642	-0.077	-0.1232	No
76	Col4a1	10729	-0.081	-0.1256	No
77	Col1a1	10904	-0.087	-0.1325	No
78	Fas	10986	-0.090	-0.1343	No
79	Mmp14	11069	-0.093	-0.1361	No
80	Fbln1	11468	-0.110	-0.1547	No
81	Fstl3	11571	-0.114	-0.1569	No
82	Sparc	11780	-0.123	-0.1647	No
83	Gpc1	12081	-0.135	-0.1772	No
84	Cd44	12184	-0.140	-0.1787	No
85	Mest	12510	-0.156	-0.1919	No
86	Thbs2	12519	-0.156	-0.1878	No
87	Id2	12523	-0.156	-0.1834	No
88	Glipr1	12752	-0.168	-0.1909	No
89	Slit2	13044	-0.181	-0.2016	No
90	Serpinh1	13053	-0.181	-0.1967	No
91	Cdh2	13315	-0.193	-0.2053	No
92	Gadd45b	13541	-0.206	-0.2116	No
93	Pdgfrb	13644	-0.211	-0.2110	No
94	Vcan	13723	-0.215	-0.2090	No
95	Cadm1	14322	-0.247	-0.2345	No
96	Sat1	14442	-0.254	-0.2336	No
97	Colgalt1	14596	-0.263	-0.2343	No
98	Vegfc	14690	-0.268	-0.2315	No
99	Cap2	15455	-0.318	-0.2640	No
100	Sgcb	15867	-0.350	-0.2763	No
101	Adam12	15969	-0.358	-0.2713	No
102	Spp1	16302	-0.387	-0.2781	No
103	Emp3	16541	-0.410	-0.2792	Yes
104	Abi3bp	16659	-0.420	-0.2733	Yes
105	Matn2	16749	-0.429	-0.2656	Yes
106	Ecm2	16809	-0.435	-0.2561	Yes
107	Fn1	16953	-0.452	-0.2507	Yes
108	Tgfb1	17023	-0.460	-0.2411	Yes
109	Lgals1	17087	-0.468	-0.2308	Yes
110	Pvr	17158	-0.477	-0.2207	Yes
111	Fstl1	17216	-0.483	-0.2097	Yes
112	Tpm4	17220	-0.483	-0.1957	Yes
113	Col12a1	17270	-0.491	-0.1841	Yes
114	Fbn1	17291	-0.494	-0.1707	Yes
115	Capg	17510	-0.528	-0.1672	Yes
116	Vim	17677	-0.560	-0.1600	Yes
117	Pfn2	17753	-0.576	-0.1472	Yes
118	Dab2	17893	-0.617	-0.1368	Yes
119	Thy1	18000	-0.648	-0.1237	Yes
120	Nid2	18020	-0.655	-0.1056	Yes
121	Anpep	18078	-0.680	-0.0888	Yes
122	Itga5	18086	-0.687	-0.0691	Yes
123	Comp	18110	-0.698	-0.0500	Yes
124	Tgfbr3	18150	-0.717	-0.0312	Yes
125	Igfbp4	18219	-0.764	-0.0125	Yes
126	Tnfaip3	18239	-0.781	0.0092	Yes