Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group1_versus_Group2.Basophil_Pheno.cls #Group1_versus_Group2_repos
Phenotype	Basophil_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	0
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	0.21093522
Normalized Enrichment Score (NES)	0.8258464
Nominal p-value	0.70414203
FDR q-value	0.8957933
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfrsf9	40	0.973	0.0208	Yes
2	Mxd1	189	0.743	0.0302	Yes
3	Plek	207	0.727	0.0464	Yes
4	Sdc4	383	0.635	0.0518	Yes
5	Per1	434	0.619	0.0637	Yes
6	Nr4a1	458	0.609	0.0768	Yes
7	Gadd45a	559	0.578	0.0850	Yes
8	Kdm6b	671	0.555	0.0920	Yes
9	Kynu	754	0.539	0.1002	Yes
10	Btg2	829	0.524	0.1085	Yes
11	Cebpd	834	0.523	0.1207	Yes
12	Klf4	870	0.514	0.1309	Yes
13	Slc2a3	913	0.508	0.1406	Yes
14	Rcan1	1009	0.490	0.1470	Yes
15	Dram1	1028	0.487	0.1575	Yes
16	Vegfa	1327	0.448	0.1517	Yes
17	Dnajb4	1329	0.448	0.1622	Yes
18	Nr4a3	1362	0.442	0.1709	Yes
19	Nr4a2	1385	0.439	0.1801	Yes
20	Lamb3	1445	0.432	0.1871	Yes
21	Rhob	1791	0.398	0.1775	Yes
22	Zbtb10	1985	0.382	0.1760	Yes
23	Pmepa1	2152	0.368	0.1756	Yes
24	Traf1	2473	0.342	0.1661	Yes
25	Gem	2513	0.338	0.1720	Yes
26	Ninj1	2576	0.333	0.1764	Yes
27	Phlda1	2578	0.332	0.1842	Yes
28	Id2	2873	0.313	0.1755	Yes
29	Plaur	2881	0.312	0.1825	Yes
30	Snn	2993	0.304	0.1836	Yes
31	Dusp2	3090	0.298	0.1853	Yes
32	Myc	3102	0.297	0.1918	Yes
33	Slc16a6	3149	0.294	0.1962	Yes
34	Ccrl2	3332	0.284	0.1929	Yes
35	Plk2	3389	0.279	0.1964	Yes
36	Nfe2l2	3514	0.271	0.1960	Yes
37	Ier2	3531	0.270	0.2015	Yes
38	Stat5a	3701	0.260	0.1984	Yes
39	Fosl1	3741	0.258	0.2024	Yes
40	Tap1	3812	0.253	0.2045	Yes
41	Ptpre	3886	0.249	0.2064	Yes
42	Tnf	3927	0.246	0.2100	Yes
43	Sphk1	4015	0.242	0.2109	Yes
44	Cd80	4168	0.235	0.2081	No
45	Birc2	4718	0.205	0.1829	No
46	Il15ra	4792	0.201	0.1836	No
47	Ets2	4923	0.195	0.1811	No
48	Sod2	4956	0.193	0.1839	No
49	Pfkfb3	5068	0.187	0.1822	No
50	Ripk2	5086	0.186	0.1857	No
51	Btg3	5229	0.179	0.1822	No
52	Cd44	5421	0.169	0.1757	No
53	Gfpt2	5515	0.165	0.1745	No
54	Marcks	5619	0.160	0.1726	No
55	Jun	5712	0.155	0.1712	No
56	Irs2	6234	0.132	0.1458	No
57	Gch1	6318	0.128	0.1442	No
58	Btg1	6980	0.100	0.1104	No
59	Dennd5a	6982	0.099	0.1127	No
60	Csf1	7038	0.097	0.1119	No
61	Atf3	7041	0.097	0.1141	No
62	Ppp1r15a	7125	0.094	0.1118	No
63	Dusp1	7132	0.094	0.1137	No
64	Dusp5	7172	0.092	0.1137	No
65	Yrdc	7530	0.076	0.0959	No
66	Tnfaip2	7543	0.075	0.0971	No
67	Olr1	7651	0.070	0.0929	No
68	Junb	7662	0.070	0.0940	No
69	Smad3	7703	0.069	0.0934	No
70	Tnfsf9	7759	0.066	0.0919	No
71	Hbegf	7903	0.060	0.0855	No
72	Cd69	7905	0.060	0.0869	No
73	Dusp4	8141	0.050	0.0752	No
74	Tiparp	8169	0.049	0.0748	No
75	Pde4b	8539	0.036	0.0555	No
76	Zfp36	8841	0.023	0.0395	No
77	Il7r	8867	0.022	0.0387	No
78	Birc3	8890	0.021	0.0380	No
79	B4galt1	9045	0.015	0.0299	No
80	Tank	9132	0.012	0.0254	No
81	Klf10	9281	0.006	0.0174	No
82	Nfat5	9390	0.002	0.0116	No
83	Litaf	9528	-0.003	0.0041	No
84	Sqstm1	9531	-0.003	0.0041	No
85	Atp2b1	9536	-0.003	0.0039	No
86	Eif1	9695	-0.009	-0.0045	No
87	Ptger4	9699	-0.009	-0.0045	No
88	Nfkb2	9712	-0.009	-0.0049	No
89	Pdlim5	10075	-0.025	-0.0242	No
90	Clcf1	10192	-0.030	-0.0298	No
91	Egr1	10202	-0.030	-0.0296	No
92	Hes1	10452	-0.042	-0.0423	No
93	Maff	10679	-0.052	-0.0534	No
94	Klf2	10921	-0.063	-0.0651	No
95	Pnrc1	10951	-0.064	-0.0652	No
96	Trib1	10990	-0.066	-0.0657	No
97	Cflar	11272	-0.077	-0.0793	No
98	Tnip1	11417	-0.083	-0.0852	No
99	Icam1	11945	-0.104	-0.1117	No
100	Tnfaip8	12072	-0.111	-0.1160	No
101	Map2k3	12213	-0.117	-0.1209	No
102	Zc3h12a	12281	-0.120	-0.1217	No
103	Nfkbia	12312	-0.122	-0.1205	No
104	Nfkbie	12355	-0.124	-0.1199	No
105	Klf9	12463	-0.128	-0.1227	No
106	Ifih1	12550	-0.132	-0.1243	No
107	Sgk1	12795	-0.144	-0.1343	No
108	Fosl2	13040	-0.155	-0.1440	No
109	Ccnd1	13049	-0.156	-0.1407	No
110	Bhlhe40	13097	-0.158	-0.1396	No
111	Rigi	13111	-0.159	-0.1365	No
112	Ehd1	13152	-0.161	-0.1349	No
113	F2rl1	13209	-0.164	-0.1341	No
114	Plau	13261	-0.167	-0.1330	No
115	Ldlr	13271	-0.167	-0.1295	No
116	Mcl1	13294	-0.168	-0.1267	No
117	Ccl5	13763	-0.192	-0.1479	No
118	Rel	13865	-0.197	-0.1487	No
119	Nampt	14179	-0.214	-0.1608	No
120	B4galt5	14220	-0.216	-0.1579	No
121	Trip10	14257	-0.219	-0.1547	No
122	Fos	14289	-0.221	-0.1512	No
123	Ifit2	14621	-0.239	-0.1637	No
124	Tnip2	14829	-0.253	-0.1691	No
125	Gpr183	14831	-0.253	-0.1632	No
126	Slc2a6	14838	-0.253	-0.1575	No
127	Ccnl1	14840	-0.253	-0.1516	No
128	Tlr2	14853	-0.254	-0.1462	No
129	Cxcl10	15082	-0.266	-0.1524	No
130	Nfkb1	15189	-0.274	-0.1518	No
131	Tubb2a	15206	-0.274	-0.1462	No
132	Bcl6	15333	-0.281	-0.1465	No
133	Rnf19b	15507	-0.294	-0.1490	No
134	Tsc22d1	15521	-0.295	-0.1428	No
135	Bcl3	15532	-0.296	-0.1363	No
136	Nfil3	15672	-0.306	-0.1367	No
137	Plpp3	15702	-0.307	-0.1311	No
138	Icosl	15713	-0.308	-0.1243	No
139	Abca1	15780	-0.313	-0.1206	No
140	Rela	16063	-0.332	-0.1282	No
141	Relb	16259	-0.350	-0.1306	No
142	Ier3	16279	-0.351	-0.1234	No
143	Il18	16312	-0.354	-0.1168	No
144	Sat1	16449	-0.365	-0.1156	No
145	Cdkn1a	16464	-0.366	-0.1077	No
146	Ier5	16646	-0.384	-0.1085	No
147	Il6st	16649	-0.385	-0.0996	No
148	Cd83	16738	-0.392	-0.0951	No
149	Map3k8	16923	-0.413	-0.0955	No
150	Cebpb	17148	-0.439	-0.0974	No
151	Irf1	17199	-0.445	-0.0896	No
152	Serpinb8	17595	-0.503	-0.0994	No
153	Panx1	17649	-0.512	-0.0902	No
154	Klf6	17684	-0.517	-0.0798	No
155	Spsb1	17714	-0.523	-0.0691	No
156	Fut4	17761	-0.532	-0.0590	No
157	Tnfaip3	17910	-0.567	-0.0538	No
158	Tgif1	18072	-0.632	-0.0477	No
159	Fosb	18166	-0.678	-0.0367	No
160	Ifngr2	18175	-0.682	-0.0211	No
161	Gadd45b	18184	-0.686	-0.0053	No
162	Socs3	18274	-0.743	0.0073	No