Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	CLP.Basophil_Pheno.cls #Group1_versus_Group2.Basophil_Pheno.cls #Group1_versus_Group2_repos
Phenotype	Basophil_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.18535611
Normalized Enrichment Score (NES)	0.7778219
Nominal p-value	0.9360825
FDR q-value	0.8537001
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fzd8	69	0.896	0.0254	Yes
2	Timp3	333	0.659	0.0324	Yes
3	Sdc4	383	0.635	0.0504	Yes
4	Gadd45a	559	0.578	0.0596	Yes
5	Serpine2	594	0.570	0.0763	Yes
6	Mmp2	867	0.515	0.0782	Yes
7	Itgb5	1019	0.489	0.0858	Yes
8	Cald1	1074	0.480	0.0985	Yes
9	Col11a1	1080	0.479	0.1138	Yes
10	Slc6a8	1218	0.462	0.1213	Yes
11	Vegfa	1327	0.448	0.1300	Yes
12	Tpm2	1372	0.441	0.1420	Yes
13	Rhob	1791	0.398	0.1320	Yes
14	Postn	2146	0.368	0.1247	Yes
15	Pmepa1	2152	0.368	0.1364	Yes
16	Gem	2513	0.338	0.1277	Yes
17	Itgb3	2613	0.329	0.1330	Yes
18	Cap2	2744	0.321	0.1363	Yes
19	Dpysl3	2824	0.316	0.1422	Yes
20	Id2	2873	0.313	0.1498	Yes
21	Plaur	2881	0.312	0.1596	Yes
22	Tpm1	3035	0.301	0.1610	Yes
23	Sparc	3157	0.294	0.1640	Yes
24	Eno2	3198	0.291	0.1713	Yes
25	Ecm1	3281	0.287	0.1761	Yes
26	Sntb1	3462	0.274	0.1752	Yes
27	Vcam1	3920	0.247	0.1582	Yes
28	Sdc1	3924	0.247	0.1661	Yes
29	Lama3	3997	0.243	0.1701	Yes
30	Thbs1	4074	0.239	0.1737	Yes
31	Col1a2	4138	0.237	0.1779	Yes
32	Col5a1	4268	0.230	0.1783	Yes
33	Gpc1	4277	0.229	0.1854	Yes
34	Wipf1	4576	0.213	0.1760	No
35	Serpinh1	4613	0.211	0.1809	No
36	Flna	4745	0.204	0.1804	No
37	Cd44	5421	0.169	0.1490	No
38	Sgcd	5437	0.169	0.1536	No
39	Mylk	5446	0.168	0.1587	No
40	Lamc1	5561	0.163	0.1577	No
41	Jun	5712	0.155	0.1546	No
42	Ntm	5762	0.153	0.1569	No
43	Basp1	6089	0.137	0.1435	No
44	Il15	6433	0.122	0.1287	No
45	Edil3	6469	0.121	0.1307	No
46	Fbln1	6727	0.110	0.1203	No
47	Bmp1	6866	0.104	0.1161	No
48	Notch2	6943	0.101	0.1152	No
49	Plod2	7045	0.097	0.1129	No
50	Cdh11	7117	0.095	0.1121	No
51	Slit3	7496	0.077	0.0939	No
52	Ppib	7653	0.070	0.0877	No
53	Mmp14	7911	0.059	0.0755	No
54	Lama2	8002	0.056	0.0724	No
55	Fuca1	8322	0.044	0.0564	No
56	Nt5e	8856	0.022	0.0280	No
57	Fap	8940	0.019	0.0241	No
58	Col4a2	9066	0.014	0.0177	No
59	Plod3	9179	0.010	0.0119	No
60	Plod1	9204	0.009	0.0108	No
61	Col1a1	9432	0.000	-0.0016	No
62	Col7a1	9557	-0.004	-0.0082	No
63	Dst	9566	-0.004	-0.0085	No
64	Gpx7	9671	-0.008	-0.0140	No
65	Vcan	9688	-0.008	-0.0146	No
66	Mest	9788	-0.012	-0.0196	No
67	Cdh2	9896	-0.017	-0.0249	No
68	Copa	9935	-0.019	-0.0264	No
69	Itgb1	10011	-0.022	-0.0298	No
70	Fgf2	10034	-0.023	-0.0302	No
71	Itga2	10083	-0.025	-0.0320	No
72	Itga5	10444	-0.042	-0.0504	No
73	Colgalt1	10461	-0.042	-0.0499	No
74	Pcolce	10539	-0.046	-0.0526	No
75	Glipr1	10545	-0.046	-0.0514	No
76	Adam12	10874	-0.061	-0.0673	No
77	Sgcb	10936	-0.064	-0.0686	No
78	Lrp1	11008	-0.066	-0.0703	No
79	Capg	11325	-0.080	-0.0850	No
80	Fn1	11460	-0.085	-0.0895	No
81	Slit2	11672	-0.094	-0.0980	No
82	Fstl3	11888	-0.102	-0.1065	No
83	Sfrp4	11890	-0.102	-0.1032	No
84	Anpep	11995	-0.107	-0.1054	No
85	Vegfc	12138	-0.114	-0.1095	No
86	P3h1	12271	-0.119	-0.1128	No
87	Qsox1	12332	-0.122	-0.1121	No
88	Tagln	12864	-0.147	-0.1364	No
89	Gja1	12900	-0.149	-0.1334	No
90	Col16a1	12907	-0.150	-0.1289	No
91	Magee1	12978	-0.153	-0.1277	No
92	Itgav	13331	-0.170	-0.1414	No
93	Ecm2	13688	-0.188	-0.1548	No
94	Thbs2	13703	-0.189	-0.1494	No
95	Tgfb1	13847	-0.197	-0.1508	No
96	Col4a1	13857	-0.197	-0.1449	No
97	Pfn2	14007	-0.204	-0.1464	No
98	Emp3	14027	-0.205	-0.1408	No
99	Pdgfrb	14191	-0.214	-0.1427	No
100	Col12a1	14294	-0.221	-0.1411	No
101	Spp1	14371	-0.226	-0.1379	No
102	Thy1	14583	-0.238	-0.1417	No
103	Tgm2	14635	-0.240	-0.1367	No
104	Cadm1	14735	-0.247	-0.1341	No
105	Mcm7	14743	-0.247	-0.1265	No
106	Calu	14783	-0.250	-0.1205	No
107	Spock1	15280	-0.279	-0.1385	No
108	Tgfbi	15501	-0.293	-0.1410	No
109	Tpm4	15711	-0.308	-0.1424	No
110	Pvr	15771	-0.312	-0.1355	No
111	Nid2	16158	-0.341	-0.1455	No
112	Tnfrsf12a	16294	-0.353	-0.1414	No
113	Sat1	16449	-0.365	-0.1380	No
114	Fstl1	16638	-0.383	-0.1358	No
115	Dab2	17218	-0.447	-0.1529	No
116	Lgals1	17246	-0.451	-0.1397	No
117	Fbn1	17293	-0.457	-0.1274	No
118	Igfbp4	17470	-0.485	-0.1212	No
119	Comp	17777	-0.536	-0.1205	No
120	Abi3bp	17781	-0.538	-0.1031	No
121	Matn2	17905	-0.566	-0.0915	No
122	Tnfaip3	17910	-0.567	-0.0732	No
123	Tgfbr3	17913	-0.568	-0.0548	No
124	Gadd45b	18184	-0.686	-0.0473	No
125	Vim	18206	-0.697	-0.0258	No
126	Fas	18404	-1.129	0.0002	No