Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group6_versus_Group8.Basophil_Pheno.cls #Group6_versus_Group8_repos
Phenotype	Basophil_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.25692767
Normalized Enrichment Score (NES)	1.1228508
Nominal p-value	0.17913386
FDR q-value	0.63563263
FWER p-Value	0.986

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sntb1	22	1.126	0.0349	Yes
2	Cald1	171	0.788	0.0513	Yes
3	Comp	509	0.608	0.0505	Yes
4	Serpine2	729	0.561	0.0553	Yes
5	Il15	763	0.553	0.0711	Yes
6	Gadd45a	876	0.533	0.0815	Yes
7	Tpm1	1085	0.483	0.0845	Yes
8	Pcolce	1166	0.464	0.0946	Yes
9	Mmp2	1249	0.450	0.1041	Yes
10	Nt5e	1255	0.448	0.1182	Yes
11	Sat1	1284	0.445	0.1308	Yes
12	Adam12	1345	0.438	0.1413	Yes
13	Fgf2	1406	0.434	0.1516	Yes
14	Fstl3	1452	0.429	0.1627	Yes
15	Lama2	1639	0.408	0.1646	Yes
16	Lamc1	1699	0.405	0.1740	Yes
17	Bgn	1912	0.378	0.1734	Yes
18	Gem	1929	0.378	0.1846	Yes
19	Tpm2	2022	0.369	0.1909	Yes
20	Il6	2043	0.367	0.2015	Yes
21	Edil3	2275	0.342	0.1986	Yes
22	Lrp1	2475	0.321	0.1969	Yes
23	Plod1	2476	0.321	0.2073	Yes
24	Calu	2603	0.309	0.2096	Yes
25	Itga2	2606	0.309	0.2194	Yes
26	Id2	2640	0.307	0.2273	Yes
27	Wipf1	2798	0.294	0.2273	Yes
28	Lama3	3036	0.275	0.2218	Yes
29	Glipr1	3128	0.269	0.2250	Yes
30	Efemp2	3144	0.268	0.2327	Yes
31	Dab2	3464	0.255	0.2217	Yes
32	Flna	3541	0.254	0.2252	Yes
33	Fas	3619	0.250	0.2286	Yes
34	Thbs1	3759	0.240	0.2280	Yes
35	Notch2	3810	0.236	0.2325	Yes
36	Magee1	3816	0.235	0.2398	Yes
37	Copa	3852	0.233	0.2452	Yes
38	Col4a2	4007	0.227	0.2432	Yes
39	Ecm2	4103	0.219	0.2445	Yes
40	Tnfaip3	4109	0.219	0.2512	Yes
41	Fuca1	4235	0.211	0.2505	Yes
42	Fap	4355	0.202	0.2498	Yes
43	Pfn2	4426	0.198	0.2519	Yes
44	Mest	4449	0.198	0.2569	Yes
45	Anpep	4656	0.187	0.2505	No
46	Jun	4662	0.187	0.2562	No
47	Capg	4908	0.173	0.2470	No
48	Tgm2	5023	0.166	0.2455	No
49	Cap2	5044	0.164	0.2495	No
50	Itgb3	5476	0.142	0.2281	No
51	Qsox1	5489	0.142	0.2320	No
52	Bmp1	5702	0.128	0.2233	No
53	Cdh11	5776	0.124	0.2229	No
54	Itgav	6014	0.110	0.2121	No
55	Lgals1	6434	0.088	0.1897	No
56	Cdh2	6476	0.086	0.1900	No
57	Nid2	7574	0.031	0.1249	No
58	Gja1	7726	0.024	0.1165	No
59	Vegfc	8154	0.003	0.0909	No
60	Cd44	8641	-0.006	0.0618	No
61	Cadm1	8849	-0.016	0.0498	No
62	Tgfbr3	8955	-0.022	0.0442	No
63	Tgfbi	9160	-0.031	0.0329	No
64	Thy1	9198	-0.033	0.0317	No
65	Mcm7	9260	-0.036	0.0292	No
66	Slit3	9533	-0.048	0.0143	No
67	Spp1	9688	-0.056	0.0068	No
68	Col4a1	9718	-0.057	0.0069	No
69	Plod2	9995	-0.070	-0.0075	No
70	Timp3	10023	-0.072	-0.0068	No
71	Vegfa	10105	-0.075	-0.0093	No
72	Tpm4	10127	-0.076	-0.0081	No
73	Col16a1	10313	-0.084	-0.0166	No
74	Rhob	10500	-0.093	-0.0248	No
75	Tgfb1	10560	-0.096	-0.0253	No
76	Itga5	10602	-0.099	-0.0246	No
77	Tnfrsf12a	10847	-0.112	-0.0357	No
78	Col5a1	11105	-0.127	-0.0471	No
79	Vim	11318	-0.139	-0.0554	No
80	P3h1	11445	-0.145	-0.0583	No
81	Ntm	11744	-0.162	-0.0711	No
82	Itgb1	11915	-0.171	-0.0758	No
83	Itgb5	12411	-0.197	-0.0993	No
84	Fbn1	12493	-0.203	-0.0977	No
85	Plod3	12557	-0.207	-0.0948	No
86	Col7a1	12648	-0.213	-0.0934	No
87	Ecm1	12657	-0.214	-0.0870	No
88	Fn1	12712	-0.217	-0.0833	No
89	Vcan	12756	-0.219	-0.0788	No
90	Ppib	12810	-0.222	-0.0749	No
91	Sgcd	12938	-0.231	-0.0751	No
92	Col1a2	13064	-0.239	-0.0750	No
93	Matn2	13104	-0.241	-0.0696	No
94	Pvr	13327	-0.255	-0.0748	No
95	Colgalt1	13597	-0.274	-0.0822	No
96	Emp3	13656	-0.278	-0.0767	No
97	Slc6a8	13684	-0.280	-0.0694	No
98	Gpc1	13775	-0.284	-0.0657	No
99	Col1a1	13888	-0.292	-0.0630	No
100	Gadd45b	14023	-0.304	-0.0613	No
101	Vcam1	14119	-0.309	-0.0571	No
102	Basp1	14134	-0.311	-0.0480	No
103	Mmp14	14304	-0.322	-0.0478	No
104	Pmepa1	14452	-0.334	-0.0459	No
105	Fstl1	14503	-0.338	-0.0381	No
106	Slit2	14718	-0.355	-0.0395	No
107	Plaur	15136	-0.402	-0.0518	No
108	Sfrp4	15240	-0.413	-0.0447	No
109	Mylk	15792	-0.494	-0.0620	No
110	Fzd8	16057	-0.552	-0.0602	No
111	Dst	16074	-0.554	-0.0434	No
112	Sgcb	16541	-0.774	-0.0466	No
113	Igfbp4	16599	-0.848	-0.0228	No
114	Pdgfrb	16633	-0.894	0.0040	No