DatasetBasophil.Basophil_Pheno.cls
#Group3_versus_Group4.Basophil_Pheno.cls
#Group3_versus_Group4_repos
PhenotypeBasophil_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class2
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.42392242
Normalized Enrichment Score (NES)1.4763428
Nominal p-value0.14430894
FDR q-value0.67196125
FWER p-Value0.43
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ccnd11430.8110.0114Yes
2Marcks2030.7560.0265Yes
3Sqle3140.6830.0367Yes
4Espl15100.6020.0398Yes
5H2bc126530.5680.0452Yes
6H2ax6760.5610.0577Yes
7Fancc7480.5450.0669Yes
8Katna18470.5250.0739Yes
9Bub18490.5240.0868Yes
10Tpx29080.5110.0959Yes
11Bard110530.4790.0991Yes
12Hmgb310640.4780.1103Yes
13Knl110820.4760.1210Yes
14Troap11370.4680.1293Yes
15Fbxo511870.4590.1377Yes
16Aurka12560.4520.1447Yes
17Tra2b13310.4420.1511Yes
18Xpo113730.4380.1595Yes
19Stil14550.4290.1652Yes
20Rad54l14910.4240.1735Yes
21Kif1115020.4230.1834Yes
22Top2a15740.4160.1893Yes
23Ube2s15870.4150.1989Yes
24Mad2l115930.4130.2088Yes
25Racgap116360.4080.2163Yes
26Ndc8016880.4020.2231Yes
27Tent4a17160.3990.2314Yes
28Dkc117860.3930.2369Yes
29Slc12a218830.3820.2405Yes
30Meis119710.3730.2445Yes
31Ewsr119900.3700.2525Yes
32Mki6720710.3600.2566Yes
33Birc520900.3580.2643Yes
34Cenpa21010.3570.2725Yes
35Odf221290.3540.2796Yes
36Kif1523740.3310.2730Yes
37Foxn324560.3240.2761Yes
38Dmd25440.3150.2787Yes
39Kif427540.3000.2734Yes
40Ccnf27800.2970.2792Yes
41Tmpo28220.2930.2840Yes
42Nusap128400.2920.2902Yes
43Mcm529030.2880.2935Yes
44Cdkn2c29400.2830.2983Yes
45Upf129450.2820.3051Yes
46Hif1a30130.2760.3078Yes
47Cenpf31100.2700.3087Yes
48Incenp31260.2690.3144Yes
49Chaf1a31500.2670.3196Yes
50Ccna232010.2650.3231Yes
51Srsf1032670.2610.3256Yes
52G3bp132960.2590.3303Yes
53Prc133560.2560.3331Yes
54Brca233880.2530.3374Yes
55Pbk34280.2510.3413Yes
56Sfpq34460.2500.3464Yes
57Slc7a535770.2450.3446Yes
58Ttk36340.2410.3471Yes
59Nek236540.2390.3519Yes
60Lmnb137190.2370.3539Yes
61Cdkn337560.2350.3575Yes
62Hnrnpu39230.2250.3530Yes
63Uck239790.2210.3551Yes
64Cdc25b39870.2200.3601Yes
65Kif2341980.2050.3525Yes
66Cdk142110.2040.3568Yes
67Tgfb142180.2030.3614Yes
68Cdc2042420.2020.3650Yes
69Rad2143330.1990.3645Yes
70Odc143670.1960.3673Yes
71Gins244090.1940.3697Yes
72Cenpe44440.1930.3724Yes
73Hmmr44640.1920.3759Yes
74Plk445050.1890.3782Yes
75Smarcc145290.1870.3814Yes
76Map3k2047020.1760.3754Yes
77Dbf447200.1750.3786Yes
78Kif20b47280.1740.3825Yes
79Numa147790.1720.3837Yes
80Ezh247820.1720.3879Yes
81Mnat148520.1680.3879Yes
82Polq48680.1670.3911Yes
83Smc248830.1660.3943Yes
84Ddx39a48880.1660.3982Yes
85Plk149040.1660.4014Yes
86Mcm649840.1620.4006Yes
87Amd149930.1620.4041Yes
88Prpf4b50350.1590.4056Yes
89Ss1850640.1570.4078Yes
90Jpt151510.1520.4063Yes
91Atf551600.1520.4096Yes
92Kif2251680.1510.4129Yes
93Top151940.1490.4151Yes
94Pole52210.1480.4171Yes
95Ilf352260.1480.4206Yes
96Mybl252320.1480.4239Yes
97Smc453780.1400.4186No
98Cdc755790.1300.4097No
99Gspt155910.1300.4122No
100Nasp56630.1260.4111No
101E2f357080.1240.4114No
102Bcl358000.1190.4089No
103Mcm358530.1160.4086No
104Tacc358570.1160.4113No
105Cdkn1b58780.1150.4129No
106Hnrnpd59830.1100.4093No
107Ctcf60400.1060.4085No
108Nsd260840.1040.4085No
109Casp8ap261370.1020.4079No
110Kif2c61710.1000.4083No
111Aurkb62180.0970.4080No
112Srsf262190.0970.4104No
113Lig362220.0970.4126No
114Ube2c63500.0910.4072No
115Cdc2764610.0860.4027No
116Traip64730.0850.4041No
117Mtf265210.0820.4033No
118Dr166650.0750.3965No
119Kif5b67320.0720.3943No
120Pml68150.0690.3910No
121Abl168290.0680.3919No
122Bub368380.0680.3931No
123Pafah1b168400.0680.3947No
124Stmn169200.0640.3915No
125Nup9869670.0620.3902No
126Hmga1b72060.0510.3771No
127Prim272160.0510.3778No
128Mcm272380.0500.3778No
129Lbr74350.0410.3669No
130Syncrip74840.0390.3649No
131Rbl174980.0380.3651No
132Smad376610.0310.3561No
133Kmt5a76670.0310.3565No
134Smc1a77120.0290.3546No
135Slc7a178530.0230.3467No
136Srsf178680.0220.3464No
137Kpnb178970.0210.3452No
138Myc79080.0200.3451No
139Notch279290.0190.3443No
140Stag179570.0180.3432No
141Orc679700.0170.3428No
142Snrpd181060.0110.3350No
143H2az281740.0090.3311No
144Ncl81790.0090.3311No
145Rad23b81890.0080.3307No
146Pura81950.0080.3306No
147Hspa883410.0010.3219No
148Cul383530.0010.3212No
149Pttg18644-0.0090.3039No
150Ccnb29237-0.0330.2688No
151Cul4a9251-0.0340.2689No
152Chmp1a9310-0.0370.2663No
153Cdk49612-0.0510.2493No
154Pds5b9627-0.0510.2498No
155Atrx9772-0.0580.2425No
156Hira9785-0.0590.2432No
157Cdc459822-0.0600.2425No
158Cks29849-0.0620.2425No
159Dtymk9881-0.0640.2421No
160Arid4a10301-0.0830.2188No
161E2f410387-0.0870.2158No
162Ccnt110401-0.0870.2172No
163Sap3010592-0.0960.2081No
164Cbx110732-0.1020.2022No
165Mapk1410896-0.1100.1950No
166Slc38a110969-0.1140.1935No
167Exo111176-0.1230.1840No
168Pola211286-0.1290.1806No
169Wrn11701-0.1480.1592No
170Nup5011703-0.1480.1628No
171Cks1b11732-0.1500.1648No
172Cdc25a11832-0.1540.1626No
173Rps6ka512023-0.1620.1551No
174Rpa212080-0.1650.1558No
175Rasal212251-0.1740.1498No
176Chek112586-0.1900.1342No
177Tnpo212647-0.1930.1354No
178Egf12810-0.2030.1306No
179Hus112971-0.2130.1261No
180Cul113042-0.2170.1273No
181Ythdc113142-0.2220.1268No
182E2f213182-0.2240.1299No
183Nolc113281-0.2320.1297No
184Orc513578-0.2490.1179No
185Tfdp114011-0.2790.0986No
186Suv39h114042-0.2810.1038No
187Tle314612-0.3250.0773No
188Cul514727-0.3340.0787No
189E2f114747-0.3360.0859No
190Cdc615100-0.3730.0737No
191H2az115582-0.4330.0553No
192Prmt515996-0.4980.0426No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT