Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group3_versus_Group4.Basophil_Pheno.cls #Group3_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.22380127
Normalized Enrichment Score (NES)	1.0022191
Nominal p-value	0.47758284
FDR q-value	0.8561005
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Timp3	108	0.859	0.0227	Yes
2	Anpep	198	0.762	0.0432	Yes
3	Gpc1	300	0.688	0.0605	Yes
4	Col5a1	316	0.682	0.0827	Yes
5	Cadm1	319	0.678	0.1057	Yes
6	Fbn1	370	0.648	0.1247	Yes
7	Cap2	398	0.635	0.1446	Yes
8	Cd44	528	0.595	0.1571	Yes
9	Fstl3	652	0.568	0.1689	Yes
10	Plod2	994	0.492	0.1651	Yes
11	Bgn	1106	0.472	0.1744	Yes
12	Slc6a8	1380	0.437	0.1728	Yes
13	Lama2	1475	0.426	0.1816	Yes
14	Fuca1	1664	0.405	0.1841	Yes
15	Gem	1734	0.397	0.1934	Yes
16	Efemp2	1768	0.395	0.2048	Yes
17	Col1a2	1850	0.386	0.2130	Yes
18	Nid2	1887	0.381	0.2238	Yes
19	Nt5e	2253	0.341	0.2134	No
20	Pdgfrb	2352	0.334	0.2188	No
21	Cald1	2625	0.309	0.2129	No
22	Slit2	2830	0.292	0.2105	No
23	Col7a1	2944	0.283	0.2133	No
24	Pfn2	3340	0.256	0.1982	No
25	Sat1	3359	0.256	0.2058	No
26	Tgm2	3360	0.255	0.2144	No
27	Cdh2	3521	0.246	0.2132	No
28	Itga5	3593	0.244	0.2172	No
29	Ecm1	3759	0.235	0.2152	No
30	Colgalt1	3839	0.230	0.2182	No
31	Fas	4170	0.207	0.2054	No
32	Tgfb1	4218	0.203	0.2094	No
33	Fstl1	4475	0.191	0.2005	No
34	Tpm4	4616	0.183	0.1983	No
35	Jun	5219	0.149	0.1670	No
36	Itgb5	5504	0.135	0.1545	No
37	Pmepa1	5720	0.123	0.1457	No
38	Gadd45b	6234	0.097	0.1180	No
39	Fgf2	6255	0.096	0.1201	No
40	Lgals1	6260	0.096	0.1231	No
41	Itgb3	6279	0.096	0.1253	No
42	Gja1	6756	0.071	0.0990	No
43	Id2	6870	0.067	0.0944	No
44	Flna	6886	0.066	0.0958	No
45	Comp	7213	0.051	0.0779	No
46	Thbs1	7531	0.037	0.0600	No
47	Calu	7570	0.035	0.0589	No
48	Adam12	7891	0.021	0.0403	No
49	Notch2	7929	0.019	0.0387	No
50	Serpine2	8152	0.010	0.0257	No
51	Sgcd	8158	0.009	0.0257	No
52	Mmp2	8349	0.001	0.0143	No
53	Col1a1	8380	0.000	0.0125	No
54	P3h1	8628	-0.008	-0.0022	No
55	Itga2	8675	-0.010	-0.0046	No
56	Fn1	8706	-0.011	-0.0060	No
57	Lrp1	8898	-0.019	-0.0169	No
58	Plaur	8944	-0.021	-0.0189	No
59	Tnfaip3	9124	-0.028	-0.0287	No
60	Vcan	9265	-0.035	-0.0360	No
61	Bmp1	9296	-0.037	-0.0365	No
62	Plod3	9613	-0.051	-0.0539	No
63	Fzd8	9810	-0.060	-0.0636	No
64	Gadd45a	9869	-0.063	-0.0650	No
65	Cdh11	10044	-0.071	-0.0731	No
66	Fap	10264	-0.081	-0.0836	No
67	Vcam1	10361	-0.085	-0.0864	No
68	Dab2	10465	-0.090	-0.0896	No
69	Ecm2	10582	-0.096	-0.0933	No
70	Lama3	10605	-0.097	-0.0914	No
71	Slit3	10624	-0.098	-0.0891	No
72	Qsox1	10720	-0.102	-0.0914	No
73	Sntb1	10722	-0.102	-0.0880	No
74	Tpm1	10739	-0.103	-0.0854	No
75	Tgfbr3	10818	-0.106	-0.0865	No
76	Mmp14	10827	-0.107	-0.0834	No
77	Col16a1	11239	-0.126	-0.1039	No
78	Pvr	11306	-0.129	-0.1035	No
79	Ppib	12181	-0.170	-0.1504	No
80	Lamc1	12227	-0.172	-0.1472	No
81	Copa	12361	-0.179	-0.1492	No
82	Vegfa	12373	-0.180	-0.1437	No
83	Edil3	12534	-0.189	-0.1469	No
84	Pcolce	12777	-0.201	-0.1547	No
85	Itgav	13073	-0.219	-0.1651	No
86	Matn2	13234	-0.228	-0.1670	No
87	Mcm7	13237	-0.229	-0.1593	No
88	Glipr1	13271	-0.231	-0.1534	No
89	Il6	13324	-0.234	-0.1486	No
90	Mylk	13434	-0.241	-0.1470	No
91	Tgfbi	13630	-0.252	-0.1502	No
92	Dst	13757	-0.261	-0.1489	No
93	Thy1	13865	-0.268	-0.1463	No
94	Wipf1	13870	-0.268	-0.1374	No
95	Capg	14060	-0.283	-0.1392	No
96	Itgb1	14409	-0.309	-0.1497	No
97	Tnfrsf12a	14410	-0.309	-0.1392	No
98	Ntm	14452	-0.312	-0.1311	No
99	Emp3	14754	-0.337	-0.1378	No
100	Col4a1	14941	-0.358	-0.1369	No
101	Spp1	14977	-0.361	-0.1267	No
102	Tpm2	14984	-0.362	-0.1148	No
103	Sfrp4	15101	-0.373	-0.1091	No
104	Magee1	15212	-0.383	-0.1027	No
105	Plod1	15435	-0.414	-0.1020	No
106	Igfbp4	15514	-0.424	-0.0923	No
107	Vim	15532	-0.426	-0.0789	No
108	Rhob	15542	-0.427	-0.0649	No
109	Vegfc	15854	-0.472	-0.0677	No
110	Mest	16059	-0.512	-0.0626	No
111	Il15	16063	-0.512	-0.0453	No
112	Sgcb	16468	-0.653	-0.0475	No
113	Basp1	16618	-0.795	-0.0295	No
114	Col4a2	16684	-1.010	0.0009	No