Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group2_versus_Group4.Basophil_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	0.3079671
Normalized Enrichment Score (NES)	1.303735
Nominal p-value	0.08565737
FDR q-value	0.88823855
FWER p-Value	0.814

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Bcl6	39	0.953	0.0225	Yes
2	Mcl1	43	0.939	0.0469	Yes
3	Birc2	62	0.905	0.0695	Yes
4	Hbegf	120	0.779	0.0864	Yes
5	Pdlim5	130	0.767	0.1059	Yes
6	Cd69	171	0.727	0.1225	Yes
7	Sphk1	257	0.678	0.1350	Yes
8	Dusp5	334	0.633	0.1470	Yes
9	Klf2	470	0.585	0.1541	Yes
10	Tlr2	721	0.522	0.1527	Yes
11	B4galt1	724	0.521	0.1662	Yes
12	Sgk1	725	0.521	0.1798	Yes
13	Zc3h12a	754	0.513	0.1915	Yes
14	Traf1	968	0.477	0.1911	Yes
15	Fosb	1064	0.464	0.1975	Yes
16	Dusp1	1195	0.447	0.2013	Yes
17	Tap1	1339	0.425	0.2038	Yes
18	Btg2	1357	0.423	0.2138	Yes
19	Gem	1372	0.420	0.2240	Yes
20	Nampt	1571	0.399	0.2224	Yes
21	Bhlhe40	1578	0.399	0.2325	Yes
22	Nfil3	1632	0.392	0.2395	Yes
23	Fos	1657	0.391	0.2483	Yes
24	Rel	1840	0.375	0.2471	Yes
25	Gpr183	1874	0.372	0.2548	Yes
26	Klf6	1927	0.368	0.2613	Yes
27	Map2k3	1947	0.367	0.2697	Yes
28	Marcks	1955	0.366	0.2789	Yes
29	Ppp1r15a	2028	0.357	0.2838	Yes
30	Csf1	2062	0.353	0.2911	Yes
31	Ier2	2135	0.345	0.2957	Yes
32	Lamb3	2146	0.344	0.3041	Yes
33	Tnfrsf9	2308	0.329	0.3030	Yes
34	Jun	2573	0.307	0.2951	Yes
35	Egr1	2810	0.289	0.2884	Yes
36	Dennd5a	2830	0.287	0.2947	Yes
37	Rhob	2893	0.282	0.2984	Yes
38	Tnfaip3	2931	0.279	0.3034	Yes
39	Trip10	3043	0.271	0.3038	Yes
40	Zbtb10	3090	0.267	0.3080	Yes
41	Ptger4	3324	0.250	0.3004	No
42	Bcl3	3556	0.233	0.2926	No
43	Sat1	3585	0.231	0.2969	No
44	Slc2a3	3590	0.231	0.3027	No
45	Cflar	4017	0.201	0.2822	No
46	Ccnl1	4196	0.189	0.2764	No
47	Zfp36	4306	0.183	0.2746	No
48	Id2	4389	0.178	0.2743	No
49	Irs2	4480	0.172	0.2733	No
50	Klf4	4533	0.169	0.2746	No
51	Rigi	4733	0.163	0.2668	No
52	Ccrl2	4860	0.155	0.2633	No
53	Plaur	5110	0.141	0.2519	No
54	B4galt5	5217	0.136	0.2491	No
55	Tnfaip2	5316	0.130	0.2466	No
56	Ier3	5489	0.123	0.2394	No
57	Icam1	5500	0.122	0.2420	No
58	Tank	6032	0.094	0.2123	No
59	Relb	6151	0.088	0.2075	No
60	Olr1	6152	0.088	0.2098	No
61	Irf1	6381	0.076	0.1980	No
62	Nfkbie	6431	0.074	0.1970	No
63	Smad3	6582	0.067	0.1897	No
64	Sod2	6731	0.059	0.1823	No
65	Jag1	6883	0.050	0.1744	No
66	Ccnd1	7017	0.044	0.1676	No
67	Gadd45b	7049	0.043	0.1668	No
68	Serpinb2	7411	0.023	0.1456	No
69	Il18	7466	0.020	0.1429	No
70	Nfkb1	7550	0.017	0.1383	No
71	Birc3	7648	0.012	0.1327	No
72	Tnip2	7690	0.010	0.1305	No
73	Nfkbia	7703	0.009	0.1300	No
74	Il6	7749	0.007	0.1275	No
75	Fosl1	7893	0.000	0.1188	No
76	Cd80	7921	0.000	0.1172	No
77	Ldlr	7958	-0.001	0.1150	No
78	Slc16a6	8066	-0.005	0.1087	No
79	Il15ra	8146	-0.008	0.1041	No
80	Btg1	8268	-0.013	0.0972	No
81	Pnrc1	8307	-0.015	0.0952	No
82	Il6st	8418	-0.019	0.0891	No
83	Stat5a	8461	-0.021	0.0871	No
84	Cd44	8474	-0.022	0.0870	No
85	Tnfaip8	8755	-0.035	0.0710	No
86	Ehd1	8768	-0.036	0.0712	No
87	Ifih1	8900	-0.041	0.0643	No
88	Litaf	9047	-0.046	0.0567	No
89	Yrdc	9162	-0.051	0.0512	No
90	Ptgs2	9217	-0.053	0.0493	No
91	Vegfa	9284	-0.057	0.0468	No
92	Gfpt2	9370	-0.060	0.0432	No
93	Nfe2l2	9487	-0.066	0.0380	No
94	Ifit2	9612	-0.072	0.0323	No
95	Gadd45a	9634	-0.073	0.0330	No
96	Ifngr2	9689	-0.075	0.0317	No
97	Dram1	9809	-0.081	0.0266	No
98	Rcan1	9842	-0.082	0.0268	No
99	Cdkn1a	9910	-0.084	0.0249	No
100	Dnajb4	9978	-0.088	0.0232	No
101	Pfkfb3	10017	-0.089	0.0232	No
102	Myc	10080	-0.092	0.0219	No
103	Dusp2	10098	-0.093	0.0233	No
104	Sqstm1	10181	-0.097	0.0209	No
105	Fut4	10241	-0.099	0.0199	No
106	Btg3	10361	-0.106	0.0155	No
107	Pmepa1	10466	-0.111	0.0121	No
108	Tnfsf9	10588	-0.117	0.0078	No
109	Per1	10682	-0.122	0.0054	No
110	Abca1	10697	-0.122	0.0077	No
111	Mxd1	10939	-0.135	-0.0033	No
112	Ets2	11051	-0.141	-0.0063	No
113	Atp2b1	11253	-0.149	-0.0146	No
114	Slc2a6	11391	-0.154	-0.0188	No
115	Snn	11618	-0.167	-0.0281	No
116	Nfkb2	11740	-0.172	-0.0309	No
117	Eif1	11941	-0.183	-0.0382	No
118	Rnf19b	11989	-0.186	-0.0362	No
119	Klf10	12074	-0.189	-0.0363	No
120	Tnip1	12261	-0.200	-0.0423	No
121	Clcf1	12292	-0.201	-0.0389	No
122	Icosl	12424	-0.208	-0.0414	No
123	Ripk2	12505	-0.214	-0.0406	No
124	Socs3	12524	-0.215	-0.0361	No
125	Tsc22d1	12611	-0.220	-0.0355	No
126	Ptpre	12678	-0.225	-0.0336	No
127	Panx1	13010	-0.244	-0.0473	No
128	Trib1	13199	-0.255	-0.0519	No
129	Gch1	13223	-0.256	-0.0466	No
130	Fosl2	13355	-0.264	-0.0476	No
131	Tgif1	13405	-0.268	-0.0436	No
132	Klf9	13729	-0.290	-0.0555	No
133	Nfat5	13735	-0.291	-0.0482	No
134	Cebpb	13827	-0.297	-0.0460	No
135	Tubb2a	14061	-0.311	-0.0519	No
136	Phlda1	14277	-0.328	-0.0563	No
137	Spsb1	14334	-0.333	-0.0510	No
138	Rela	14442	-0.342	-0.0485	No
139	Il7r	14643	-0.360	-0.0512	No
140	Tnf	14652	-0.361	-0.0423	No
141	Nr4a2	14914	-0.384	-0.0480	No
142	Ninj1	14936	-0.386	-0.0392	No
143	Plek	14994	-0.392	-0.0324	No
144	Junb	15334	-0.430	-0.0416	No
145	Tiparp	15384	-0.436	-0.0332	No
146	Nr4a1	15798	-0.496	-0.0452	No
147	Pde4b	15842	-0.506	-0.0345	No
148	Kdm6b	15848	-0.507	-0.0216	No
149	Cebpd	15908	-0.520	-0.0116	No
150	Ier5	16240	-0.604	-0.0158	No
151	Maff	16461	-0.714	-0.0104	No
152	Map3k8	16659	-0.946	0.0024	No