Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group2_versus_Group4.Basophil_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2538831
Normalized Enrichment Score (NES)	1.1473105
Nominal p-value	0.1503006
FDR q-value	0.59806716
FWER p-Value	0.978

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Anpep	0	1.911	0.0542	Yes
2	Fstl1	4	1.240	0.0892	Yes
3	Fstl3	28	0.992	0.1160	Yes
4	Fas	38	0.957	0.1426	Yes
5	Nid2	82	0.864	0.1645	Yes
6	Fbn1	179	0.722	0.1792	Yes
7	Col5a1	266	0.667	0.1929	Yes
8	Calu	341	0.630	0.2064	Yes
9	Itgb5	542	0.565	0.2103	Yes
10	Col4a1	753	0.513	0.2122	Yes
11	Slc6a8	1069	0.463	0.2064	Yes
12	Magee1	1209	0.445	0.2106	Yes
13	Gem	1372	0.420	0.2128	Yes
14	Efemp2	1431	0.414	0.2210	Yes
15	Col7a1	1595	0.397	0.2224	Yes
16	Fuca1	1719	0.385	0.2259	Yes
17	Timp3	1889	0.371	0.2263	Yes
18	Tgfbr3	1905	0.369	0.2358	Yes
19	Bgn	1919	0.368	0.2455	Yes
20	Gja1	2280	0.332	0.2332	Yes
21	Cald1	2362	0.326	0.2376	Yes
22	Pfn2	2556	0.308	0.2347	Yes
23	Jun	2573	0.307	0.2424	Yes
24	Lama2	2604	0.304	0.2493	Yes
25	Copa	2793	0.291	0.2462	Yes
26	Rhob	2893	0.282	0.2482	Yes
27	Tnfaip3	2931	0.279	0.2539	Yes
28	Dst	3304	0.252	0.2386	No
29	Tpm4	3370	0.247	0.2417	No
30	Vcam1	3559	0.233	0.2370	No
31	Sat1	3585	0.231	0.2420	No
32	Serpine2	3757	0.219	0.2379	No
33	Cadm1	3920	0.208	0.2340	No
34	Id2	4389	0.178	0.2109	No
35	Nt5e	4470	0.173	0.2109	No
36	Cdh2	4536	0.169	0.2118	No
37	P3h1	4756	0.162	0.2032	No
38	Notch2	4887	0.154	0.1997	No
39	Qsox1	4894	0.153	0.2037	No
40	Plaur	5110	0.141	0.1948	No
41	Thbs1	5113	0.141	0.1987	No
42	Flna	5244	0.134	0.1946	No
43	Itga5	5315	0.130	0.1941	No
44	Dab2	5696	0.111	0.1743	No
45	Plod2	5883	0.101	0.1660	No
46	Itgb1	5988	0.096	0.1625	No
47	Pdgfrb	6062	0.093	0.1607	No
48	Tpm1	6126	0.090	0.1594	No
49	Sfrp4	6132	0.089	0.1617	No
50	Gpc1	6261	0.083	0.1563	No
51	Ecm2	6285	0.081	0.1572	No
52	Ppib	6331	0.078	0.1567	No
53	Mmp2	6611	0.065	0.1417	No
54	Gadd45b	7049	0.043	0.1166	No
55	Sntb1	7374	0.025	0.0978	No
56	Itga2	7605	0.014	0.0843	No
57	Itgb3	7682	0.010	0.0800	No
58	Il6	7749	0.007	0.0762	No
59	Col1a1	7888	0.000	0.0679	No
60	Col1a2	7899	0.000	0.0673	No
61	Ecm1	8100	-0.007	0.0554	No
62	Cd44	8474	-0.022	0.0335	No
63	Slit2	9136	-0.050	-0.0049	No
64	Vegfa	9284	-0.057	-0.0122	No
65	Tgfb1	9454	-0.064	-0.0205	No
66	Col16a1	9498	-0.066	-0.0212	No
67	Gadd45a	9634	-0.073	-0.0273	No
68	Glipr1	9805	-0.081	-0.0353	No
69	Colgalt1	10359	-0.106	-0.0656	No
70	Fap	10396	-0.108	-0.0647	No
71	Pmepa1	10466	-0.111	-0.0657	No
72	Vim	10857	-0.131	-0.0855	No
73	Capg	11498	-0.160	-0.1196	No
74	Mcm7	11616	-0.167	-0.1219	No
75	Lamc1	11849	-0.178	-0.1308	No
76	Lrp1	11922	-0.182	-0.1300	No
77	Edil3	12043	-0.189	-0.1319	No
78	Vcan	12089	-0.190	-0.1292	No
79	Adam12	12101	-0.191	-0.1244	No
80	Thy1	12145	-0.193	-0.1216	No
81	Plod3	12337	-0.203	-0.1273	No
82	Fgf2	12579	-0.218	-0.1356	No
83	Spp1	12769	-0.230	-0.1405	No
84	Tnfrsf12a	12846	-0.234	-0.1385	No
85	Pvr	13006	-0.244	-0.1411	No
86	Comp	13188	-0.255	-0.1448	No
87	Col4a2	13450	-0.271	-0.1529	No
88	Fn1	13562	-0.279	-0.1516	No
89	Mmp14	13696	-0.288	-0.1515	No
90	Vegfc	13723	-0.290	-0.1448	No
91	Itgav	13742	-0.291	-0.1376	No
92	Cdh11	13762	-0.293	-0.1305	No
93	Sgcd	14112	-0.314	-0.1426	No
94	Tgm2	14259	-0.326	-0.1422	No
95	Il15	14399	-0.338	-0.1409	No
96	Wipf1	14487	-0.347	-0.1363	No
97	Tpm2	14489	-0.347	-0.1266	No
98	Plod1	14784	-0.372	-0.1337	No
99	Cap2	14879	-0.380	-0.1286	No
100	Fzd8	14971	-0.390	-0.1230	No
101	Sgcb	15009	-0.394	-0.1141	No
102	Emp3	15154	-0.408	-0.1112	No
103	Lgals1	15477	-0.448	-0.1179	No
104	Slit3	15516	-0.452	-0.1073	No
105	Lama3	15522	-0.452	-0.0948	No
106	Tgfbi	15603	-0.464	-0.0865	No
107	Pcolce	15651	-0.471	-0.0760	No
108	Mest	15706	-0.481	-0.0656	No
109	Mylk	15871	-0.513	-0.0609	No
110	Bmp1	16107	-0.566	-0.0590	No
111	Igfbp4	16388	-0.666	-0.0570	No
112	Matn2	16510	-0.749	-0.0431	No
113	Ntm	16611	-0.857	-0.0248	No
114	Basp1	16680	-1.059	0.0011	No