Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group2_versus_Group4.Basophil_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.25485194
Normalized Enrichment Score (NES)	1.161824
Nominal p-value	0.17857143
FDR q-value	0.6997644
FWER p-Value	0.973

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fas	38	0.957	0.0294	Yes
2	Mcl1	43	0.939	0.0602	Yes
3	Cd69	171	0.727	0.0766	Yes
4	Cdc25b	284	0.660	0.0917	Yes
5	Dpyd	408	0.608	0.1044	Yes
6	Retsat	466	0.586	0.1204	Yes
7	Etf1	498	0.575	0.1375	Yes
8	Ppp3r1	602	0.552	0.1496	Yes
9	Sptan1	1019	0.471	0.1401	Yes
10	Tap1	1339	0.425	0.1349	Yes
11	Btg2	1357	0.423	0.1479	Yes
12	Tnfsf10	1407	0.416	0.1587	Yes
13	Hmox1	1627	0.393	0.1585	Yes
14	Cdkn1b	1778	0.379	0.1620	Yes
15	Lef1	1817	0.376	0.1722	Yes
16	Timp3	1889	0.371	0.1802	Yes
17	Cth	1894	0.370	0.1922	Yes
18	Tgfbr3	1905	0.369	0.2038	Yes
19	Bgn	1919	0.368	0.2152	Yes
20	Pmaip1	2031	0.356	0.2203	Yes
21	Gna15	2079	0.352	0.2291	Yes
22	Casp9	2149	0.344	0.2363	Yes
23	Bcap31	2446	0.318	0.2289	Yes
24	Jun	2573	0.307	0.2315	Yes
25	Lmna	2644	0.303	0.2373	Yes
26	Rhob	2893	0.282	0.2317	Yes
27	Psen2	3029	0.272	0.2325	Yes
28	Gpx1	3050	0.270	0.2403	Yes
29	Bik	3124	0.264	0.2446	Yes
30	Top2a	3176	0.260	0.2501	Yes
31	Isg20	3345	0.249	0.2482	Yes
32	Sc5d	3405	0.244	0.2528	Yes
33	Sat1	3585	0.231	0.2496	Yes
34	Cd38	3624	0.228	0.2549	Yes
35	App	3834	0.214	0.2493	No
36	Cflar	4017	0.201	0.2450	No
37	Rnasel	4438	0.174	0.2254	No
38	Nefh	4449	0.174	0.2305	No
39	Bnip3l	4623	0.168	0.2256	No
40	Dnajc3	5043	0.145	0.2051	No
41	Gucy2e	5336	0.129	0.1918	No
42	Casp3	5359	0.128	0.1947	No
43	Ier3	5489	0.123	0.1910	No
44	Vdac2	5585	0.117	0.1891	No
45	Bmf	5754	0.108	0.1826	No
46	Madd	5835	0.103	0.1811	No
47	Pdgfrb	6062	0.093	0.1706	No
48	Txnip	6356	0.077	0.1554	No
49	Irf1	6381	0.076	0.1565	No
50	Psen1	6428	0.074	0.1562	No
51	Pdcd4	6457	0.073	0.1569	No
52	Aifm3	6534	0.069	0.1546	No
53	Slc20a1	6573	0.067	0.1545	No
54	Mmp2	6611	0.065	0.1545	No
55	Sod2	6731	0.059	0.1492	No
56	Ctnnb1	6899	0.049	0.1408	No
57	F2r	6952	0.047	0.1392	No
58	Gsr	6972	0.046	0.1396	No
59	Ccnd1	7017	0.044	0.1384	No
60	Gadd45b	7049	0.043	0.1379	No
61	Wee1	7324	0.028	0.1223	No
62	Ifngr1	7339	0.027	0.1224	No
63	Cyld	7407	0.023	0.1191	No
64	Il18	7466	0.020	0.1162	No
65	Bcl2l11	7490	0.019	0.1155	No
66	Cav1	7496	0.019	0.1158	No
67	Lgals3	7642	0.012	0.1075	No
68	Birc3	7648	0.012	0.1075	No
69	Add1	7675	0.010	0.1063	No
70	Il6	7749	0.007	0.1021	No
71	Smad7	8143	-0.008	0.0787	No
72	Bax	8153	-0.009	0.0784	No
73	Crebbp	8200	-0.011	0.0760	No
74	Cd44	8474	-0.022	0.0602	No
75	Igf2r	8967	-0.043	0.0320	No
76	Ptk2	9010	-0.045	0.0309	No
77	Casp6	9048	-0.046	0.0302	No
78	H1f0	9049	-0.046	0.0317	No
79	Brca1	9054	-0.047	0.0330	No
80	Dnaja1	9381	-0.061	0.0154	No
81	Mgmt	9453	-0.064	0.0132	No
82	Gsn	9489	-0.066	0.0133	No
83	Nedd9	9601	-0.071	0.0090	No
84	Gadd45a	9634	-0.073	0.0094	No
85	Rock1	9773	-0.079	0.0037	No
86	Xiap	9852	-0.082	0.0017	No
87	Cdkn1a	9910	-0.084	0.0011	No
88	Ddit3	9936	-0.086	0.0024	No
89	Pak1	10087	-0.092	-0.0036	No
90	Sqstm1	10181	-0.097	-0.0060	No
91	Dap3	10209	-0.098	-0.0044	No
92	Btg3	10361	-0.106	-0.0100	No
93	Dffa	10401	-0.108	-0.0088	No
94	Dnm1l	10597	-0.118	-0.0167	No
95	Casp2	10733	-0.124	-0.0207	No
96	Rhot2	10770	-0.126	-0.0187	No
97	Hgf	10832	-0.130	-0.0181	No
98	Hmgb2	10935	-0.135	-0.0198	No
99	Pea15a	11160	-0.145	-0.0285	No
100	Ccnd2	11571	-0.165	-0.0478	No
101	Plcb2	11594	-0.167	-0.0436	No
102	Anxa1	11655	-0.169	-0.0416	No
103	Gpx4	11694	-0.171	-0.0383	No
104	Fdxr	12286	-0.201	-0.0673	No
105	Timp2	12301	-0.202	-0.0615	No
106	Ebp	12520	-0.215	-0.0675	No
107	Casp4	12567	-0.218	-0.0631	No
108	Casp7	12623	-0.221	-0.0591	No
109	Dap	12762	-0.229	-0.0599	No
110	Tnfrsf12a	12846	-0.234	-0.0571	No
111	Erbb3	13068	-0.247	-0.0623	No
112	Gch1	13223	-0.256	-0.0631	No
113	Ank	13406	-0.268	-0.0652	No
114	Ppp2r5b	13585	-0.281	-0.0667	No
115	Cdk2	13615	-0.283	-0.0591	No
116	Bcl2l2	13633	-0.284	-0.0507	No
117	Diablo	13652	-0.285	-0.0423	No
118	Casp8	13773	-0.293	-0.0399	No
119	Tspo	13792	-0.295	-0.0312	No
120	Rara	13996	-0.308	-0.0333	No
121	Ppt1	14304	-0.330	-0.0409	No
122	Bid	14423	-0.340	-0.0367	No
123	Tgfb2	14439	-0.342	-0.0263	No
124	Rela	14442	-0.342	-0.0151	No
125	Tnf	14652	-0.361	-0.0157	No
126	Bcl10	15035	-0.397	-0.0257	No
127	Casp1	15111	-0.404	-0.0168	No
128	Satb1	15147	-0.407	-0.0055	No
129	Gpx3	15447	-0.444	-0.0088	No
130	Bcl2l1	16053	-0.554	-0.0270	No
131	Krt18	16084	-0.561	-0.0102	No
132	Ifitm3	16320	-0.636	-0.0034	No
133	Sod1	16556	-0.791	0.0086	No