| Dataset | Basophil.Basophil_Pheno.cls #Group2_versus_Group3.Basophil_Pheno.cls #Group2_versus_Group3_repos |
| Phenotype | Basophil_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 1 |
| GeneSet | HALLMARK_TGF_BETA_SIGNALING |
| Enrichment Score (ES) | 0.36687028 |
| Normalized Enrichment Score (NES) | 1.4920017 |
| Nominal p-value | 0.019417476 |
| FDR q-value | 0.8735306 |
| FWER p-Value | 0.447 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Ski | 178 | 0.674 | 0.0494 | Yes |
| 2 | Ppp1r15a | 265 | 0.618 | 0.0993 | Yes |
| 3 | Tjp1 | 741 | 0.482 | 0.1137 | Yes |
| 4 | Id1 | 839 | 0.467 | 0.1495 | Yes |
| 5 | Cdk9 | 927 | 0.451 | 0.1844 | Yes |
| 6 | Cdkn1c | 968 | 0.443 | 0.2215 | Yes |
| 7 | Skil | 1204 | 0.409 | 0.2439 | Yes |
| 8 | Acvr1 | 1599 | 0.363 | 0.2526 | Yes |
| 9 | Bcar3 | 1625 | 0.361 | 0.2832 | Yes |
| 10 | Smad1 | 2009 | 0.320 | 0.2888 | Yes |
| 11 | Smurf1 | 2177 | 0.306 | 0.3060 | Yes |
| 12 | Cdh1 | 2448 | 0.287 | 0.3154 | Yes |
| 13 | Rhoa | 2591 | 0.274 | 0.3313 | Yes |
| 14 | Sptbn1 | 2609 | 0.273 | 0.3546 | Yes |
| 15 | Junb | 2808 | 0.260 | 0.3658 | Yes |
| 16 | Hdac1 | 3439 | 0.219 | 0.3475 | Yes |
| 17 | Rab31 | 3529 | 0.212 | 0.3610 | Yes |
| 18 | Ube2d3 | 3730 | 0.200 | 0.3669 | Yes |
| 19 | Ppm1a | 4188 | 0.175 | 0.3550 | No |
| 20 | Smad7 | 4253 | 0.170 | 0.3663 | No |
| 21 | Id2 | 4723 | 0.148 | 0.3513 | No |
| 22 | Map3k7 | 5778 | 0.094 | 0.2964 | No |
| 23 | Hipk2 | 5804 | 0.093 | 0.3032 | No |
| 24 | Thbs1 | 5906 | 0.088 | 0.3050 | No |
| 25 | Klf10 | 6487 | 0.062 | 0.2757 | No |
| 26 | Smurf2 | 6539 | 0.060 | 0.2779 | No |
| 27 | Slc20a1 | 6562 | 0.059 | 0.2818 | No |
| 28 | Smad3 | 7000 | 0.038 | 0.2590 | No |
| 29 | Fnta | 7257 | 0.027 | 0.2460 | No |
| 30 | Ctnnb1 | 7606 | 0.012 | 0.2261 | No |
| 31 | Bmpr1a | 8374 | -0.022 | 0.1820 | No |
| 32 | Smad6 | 8833 | -0.044 | 0.1584 | No |
| 33 | Arid4b | 9015 | -0.052 | 0.1522 | No |
| 34 | Xiap | 9267 | -0.063 | 0.1427 | No |
| 35 | Ppp1ca | 10294 | -0.106 | 0.0905 | No |
| 36 | Wwtr1 | 10519 | -0.118 | 0.0876 | No |
| 37 | Tgfbr1 | 10541 | -0.119 | 0.0969 | No |
| 38 | Ncor2 | 10659 | -0.124 | 0.1009 | No |
| 39 | Trim33 | 11230 | -0.151 | 0.0801 | No |
| 40 | Tgif1 | 11547 | -0.168 | 0.0762 | No |
| 41 | Fkbp1a | 12071 | -0.194 | 0.0621 | No |
| 42 | Apc | 12131 | -0.198 | 0.0762 | No |
| 43 | Pmepa1 | 12448 | -0.215 | 0.0763 | No |
| 44 | Tgfb1 | 13319 | -0.267 | 0.0479 | No |
| 45 | Furin | 14782 | -0.386 | -0.0055 | No |
| 46 | Ifngr2 | 15119 | -0.420 | 0.0117 | No |
| 47 | Bmpr2 | 15264 | -0.437 | 0.0420 | No |
| 48 | Eng | 15677 | -0.495 | 0.0614 | No |

