Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group2_versus_Group3.Basophil_Pheno.cls #Group2_versus_Group3_repos
Phenotype	Basophil_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2534324
Normalized Enrichment Score (NES)	1.0984116
Nominal p-value	0.25903615
FDR q-value	0.6082669
FWER p-Value	0.98

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fstl1	17	0.989	0.0322	Yes
2	Magee1	48	0.847	0.0589	Yes
3	Rhob	124	0.720	0.0786	Yes
4	Col4a1	155	0.688	0.1000	Yes
5	Calu	378	0.575	0.1059	Yes
6	Fas	491	0.540	0.1173	Yes
7	Fstl3	501	0.538	0.1349	Yes
8	Sfrp4	515	0.536	0.1521	Yes
9	Vcam1	527	0.532	0.1694	Yes
10	Dst	544	0.527	0.1861	Yes
11	Itgb5	608	0.508	0.1994	Yes
12	Nid2	754	0.480	0.2068	Yes
13	Copa	823	0.469	0.2185	Yes
14	Tnfaip3	926	0.452	0.2275	Yes
15	Anpep	967	0.444	0.2400	Yes
16	Tgfbr3	991	0.440	0.2534	Yes
17	Itgb1	1234	0.405	0.2525	No
18	Gja1	1441	0.379	0.2528	No
19	Col4a2	2477	0.285	0.2000	No
20	Vim	2535	0.279	0.2059	No
21	Qsox1	2828	0.258	0.1970	No
22	Dab2	3307	0.226	0.1758	No
23	Ppib	3350	0.224	0.1808	No
24	Vegfc	3569	0.209	0.1747	No
25	Il6	4054	0.182	0.1516	No
26	Vegfa	4116	0.179	0.1539	No
27	Il15	4185	0.175	0.1557	No
28	Serpine2	4210	0.173	0.1601	No
29	Plaur	4245	0.171	0.1638	No
30	Mest	4278	0.169	0.1676	No
31	P3h1	4311	0.169	0.1713	No
32	Tpm1	4367	0.167	0.1736	No
33	Ecm2	4402	0.165	0.1771	No
34	Col7a1	4441	0.163	0.1803	No
35	Sntb1	4644	0.152	0.1733	No
36	Jun	4674	0.151	0.1766	No
37	Id2	4723	0.148	0.1787	No
38	Notch2	4883	0.139	0.1737	No
39	Glipr1	5077	0.130	0.1665	No
40	Sgcb	5091	0.130	0.1701	No
41	Spp1	5176	0.126	0.1692	No
42	Tnfrsf12a	5395	0.113	0.1599	No
43	Col16a1	5552	0.105	0.1540	No
44	Col5a1	5561	0.104	0.1571	No
45	Capg	5570	0.104	0.1601	No
46	Pfn2	5736	0.096	0.1534	No
47	Thbs1	5906	0.088	0.1461	No
48	Mmp2	6323	0.071	0.1234	No
49	Tpm4	6331	0.070	0.1254	No
50	Mcm7	6495	0.062	0.1176	No
51	Flna	6684	0.053	0.1080	No
52	Plod1	6802	0.047	0.1026	No
53	Itga2	7376	0.021	0.0687	No
54	Efemp2	7762	0.004	0.0457	No
55	Gadd45a	7826	0.002	0.0419	No
56	Thy1	7849	0.001	0.0406	No
57	Col1a1	7874	0.000	0.0392	No
58	Edil3	7880	0.000	0.0389	No
59	Fap	8001	-0.005	0.0318	No
60	Tpm2	8141	-0.011	0.0238	No
61	Fuca1	8343	-0.021	0.0124	No
62	Sat1	8405	-0.024	0.0095	No
63	Gem	8494	-0.027	0.0051	No
64	Fbn1	8675	-0.036	-0.0046	No
65	Gadd45b	9079	-0.055	-0.0270	No
66	Lamc1	9475	-0.071	-0.0484	No
67	Itgb3	9486	-0.071	-0.0466	No
68	Wipf1	9648	-0.079	-0.0537	No
69	Tgfbi	9678	-0.080	-0.0527	No
70	Itgav	9752	-0.083	-0.0543	No
71	Emp3	10111	-0.098	-0.0726	No
72	Nt5e	10547	-0.119	-0.0948	No
73	Lrp1	10565	-0.120	-0.0918	No
74	Slc6a8	10764	-0.130	-0.0994	No
75	Itga5	10884	-0.135	-0.1021	No
76	Cald1	11083	-0.144	-0.1092	No
77	Cdh2	11178	-0.149	-0.1098	No
78	Plod3	11566	-0.169	-0.1275	No
79	Mmp14	11824	-0.182	-0.1369	No
80	Pvr	11825	-0.182	-0.1307	No
81	Mylk	11859	-0.184	-0.1265	No
82	Bgn	11874	-0.184	-0.1212	No
83	Vcan	11935	-0.188	-0.1185	No
84	Basp1	12143	-0.199	-0.1243	No
85	Matn2	12407	-0.213	-0.1330	No
86	Pmepa1	12448	-0.215	-0.1282	No
87	Igfbp4	12856	-0.239	-0.1447	No
88	Lama2	12860	-0.240	-0.1368	No
89	Pcolce	12876	-0.240	-0.1296	No
90	Tgfb1	13319	-0.267	-0.1473	No
91	Adam12	13337	-0.269	-0.1393	No
92	Pdgfrb	13409	-0.274	-0.1343	No
93	Cdh11	13566	-0.286	-0.1341	No
94	Cadm1	13824	-0.304	-0.1394	No
95	Fn1	13831	-0.305	-0.1295	No
96	Slit3	13881	-0.309	-0.1221	No
97	Ecm1	13954	-0.313	-0.1159	No
98	Slit2	14024	-0.320	-0.1093	No
99	Sgcd	14406	-0.354	-0.1204	No
100	Fzd8	14425	-0.355	-0.1095	No
101	Colgalt1	14441	-0.357	-0.0984	No
102	Comp	14476	-0.360	-0.0884	No
103	Timp3	14654	-0.375	-0.0864	No
104	Col1a2	14787	-0.386	-0.0814	No
105	Plod2	15210	-0.430	-0.0924	No
106	Lgals1	15231	-0.433	-0.0790	No
107	Lama3	15414	-0.455	-0.0747	No
108	Ntm	15451	-0.460	-0.0614	No
109	Fgf2	15457	-0.461	-0.0462	No
110	Bmp1	15995	-0.556	-0.0598	No
111	Tgm2	16061	-0.576	-0.0444	No
112	Gpc1	16341	-0.655	-0.0392	No
113	Cd44	16422	-0.703	-0.0204	No
114	Cap2	16678	-1.102	0.0013	No