DatasetBasophil.Basophil_Pheno.cls
#Group1_versus_Group4.Basophil_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeBasophil_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.48158777
Normalized Enrichment Score (NES)1.6905627
Nominal p-value0.07569721
FDR q-value0.07094694
FWER p-Value0.105
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Chaf1a740.8310.0117Yes
2Marcks1300.7520.0230Yes
3Xpo11850.7180.0337Yes
4Stil1880.7150.0475Yes
5Lmnb12100.7020.0599Yes
6Hnrnpd2390.6830.0715Yes
7Mad2l13520.6320.0770Yes
8Cdkn2c3730.6260.0880Yes
9Racgap14040.6130.0981Yes
10Lbr4100.6110.1096Yes
11Top2a4140.6100.1213Yes
12Espl14540.5980.1306Yes
13Ddx39a4580.5970.1421Yes
14Rad214940.5880.1514Yes
15Upf15080.5840.1620Yes
16Bub15340.5740.1716Yes
17Odf25710.5670.1804Yes
18Kpnb16470.5490.1866Yes
19Hnrnpu6500.5480.1971Yes
20Pbk6980.5350.2047Yes
21Fbxo58030.5160.2084Yes
22Tra2b8430.5070.2159Yes
23Aurka8980.4970.2223Yes
24Kif119540.4880.2285Yes
25Rad54l9920.4810.2356Yes
26Incenp10230.4750.2430Yes
27Mcm611450.4570.2446Yes
28H2bc1211620.4550.2525Yes
29Cdc711680.4540.2610Yes
30Numa112220.4440.2664Yes
31Fancc12260.4430.2749Yes
32Slc7a512570.4380.2816Yes
33Mki6712660.4370.2896Yes
34Cdc25b13150.4320.2951Yes
35Hspa813170.4320.3035Yes
36Pole13410.4270.3104Yes
37Ewsr113420.4270.3187Yes
38Tmpo13860.4220.3243Yes
39G3bp114010.4190.3316Yes
40Bard114630.4130.3360Yes
41Hif1a15030.4080.3416Yes
42Mcm315070.4080.3493Yes
43Casp8ap215790.3980.3528Yes
44Cdc2715980.3950.3593Yes
45Syncrip16410.3900.3644Yes
46Nsd217600.3770.3646Yes
47Kif2217990.3730.3695Yes
48Cenpf18370.3680.3745Yes
49Mcm218730.3640.3794Yes
50Cdk118760.3640.3864Yes
51Ccnf18850.3620.3929Yes
52Prpf4b19780.3530.3942Yes
53Rad23b20320.3480.3978Yes
54Cenpe20420.3470.4040Yes
55Mtf221700.3370.4029Yes
56Ccnd122490.3280.4045Yes
57Dtymk23090.3260.4073Yes
58Smc1a23470.3230.4113Yes
59Ttk23490.3230.4176Yes
60Hmmr24930.3110.4149Yes
61Knl124990.3100.4207Yes
62Tpx225160.3080.4257Yes
63Kif1525320.3070.4308Yes
64Ccna225670.3040.4346Yes
65Kif2325720.3040.4403Yes
66Sfpq25820.3030.4456Yes
67Tent4a26090.3010.4499Yes
68Cul127280.2920.4484Yes
69Kif427340.2920.4538Yes
70Troap28700.2820.4511Yes
71Kif5b30300.2710.4468Yes
72Kif2c30730.2690.4495Yes
73Mnat131380.2630.4507Yes
74Ndc8032550.2550.4486Yes
75H2ax33920.2480.4452Yes
76Ilf334540.2420.4462Yes
77Smarcc135290.2380.4464Yes
78Prc135760.2350.4482Yes
79Smc435880.2340.4521Yes
80Notch236190.2310.4547Yes
81Nasp36380.2300.4581Yes
82Kif20b36590.2290.4614Yes
83Rbl137580.2200.4597Yes
84Cdc4537610.2200.4639Yes
85Mcm538130.2170.4650Yes
86Smc238170.2170.4691Yes
87Pds5b38380.2160.4720Yes
88Gspt139020.2120.4724Yes
89Chek139410.2100.4741Yes
90Katna139480.2090.4778Yes
91Plk140870.2020.4734Yes
92Odc141300.1990.4747Yes
93Nek241320.1990.4785Yes
94Uck241460.1980.4816Yes
95Sqle43880.1830.4706No
96Mybl243980.1820.4736No
97Aurkb44340.1800.4749No
98Lig344370.1790.4783No
99Srsf246540.1670.4685No
100Stag147030.1640.4688No
101Tfdp148780.1550.4612No
102Hmgb349100.1530.4623No
103Cdc25a49280.1520.4643No
104Brca250280.1470.4611No
105Top150330.1460.4637No
106Smad352110.1360.4556No
107E2f255220.1190.4392No
108Pafah1b155240.1190.4414No
109Srsf1055740.1170.4408No
110Hira56830.1140.4364No
111Cdkn1b58020.1070.4314No
112Cul559030.1020.4273No
113Tacc359290.1010.4277No
114Prim260840.0920.4202No
115Cul363370.0780.4065No
116Dbf464060.0740.4038No
117Abl164230.0740.4042No
118Ss1865310.0680.3991No
119Atf565460.0680.3996No
120Ccnt165770.0660.3990No
121Rps6ka565820.0660.4001No
122Ezh267080.0590.3936No
123Ctcf68320.0520.3872No
124Nup5069340.0460.3820No
125Foxn369380.0460.3827No
126Polq69530.0460.3827No
127Dmd69600.0460.3833No
128Suv39h171800.0350.3707No
129Tgfb172390.0340.3678No
130Pola273190.0300.3636No
131Myc73690.0280.3612No
132Arid4a73730.0270.3615No
133Kmt5a76080.0150.3477No
134Plk476210.0150.3472No
135Slc7a176740.0120.3443No
136Jpt177550.0080.3396No
137Nup9877830.0070.3381No
138Slc38a178630.0030.3334No
139E2f48073-0.0040.3208No
140Wrn8133-0.0070.3174No
141Srsf18240-0.0130.3112No
142Slc12a28243-0.0130.3114No
143Atrx8259-0.0140.3107No
144Pml8331-0.0180.3068No
145Ube2c8336-0.0180.3069No
146Ncl8600-0.0300.2915No
147E2f38714-0.0360.2854No
148Prmt58782-0.0390.2821No
149Dkc19001-0.0510.2699No
150Mapk149033-0.0530.2690No
151Cul4a9099-0.0560.2662No
152Nolc19110-0.0570.2667No
153Ccnb29123-0.0570.2671No
154Tnpo29259-0.0640.2601No
155Ube2s9306-0.0670.2586No
156Cks29432-0.0750.2525No
157Map3k209519-0.0790.2488No
158Cdkn39738-0.0900.2374No
159Chmp1a9755-0.0910.2382No
160Ythdc19878-0.0960.2327No
161Rpa210101-0.1070.2213No
162Nusap110190-0.1120.2182No
163Dr110257-0.1150.2164No
164Birc510517-0.1300.2033No
165Sap3010606-0.1340.2005No
166Traip10669-0.1380.1995No
167Rasal210722-0.1400.1990No
168Cbx110729-0.1400.2014No
169Tle310819-0.1450.1989No
170Gins210843-0.1470.2003No
171Cdc610853-0.1470.2026No
172E2f111733-0.1930.1531No
173Stmn111927-0.2060.1455No
174Bcl312062-0.2120.1415No
175Hmga1b12081-0.2130.1445No
176Exo112244-0.2230.1391No
177Pttg112292-0.2270.1406No
178Egf12700-0.2500.1208No
179Snrpd112817-0.2570.1188No
180Bub312985-0.2660.1138No
181Cenpa13368-0.2930.0964No
182Meis113823-0.3230.0752No
183Orc514107-0.3440.0648No
184Amd114411-0.3730.0537No
185Cdk414663-0.3970.0462No
186Cks1b15123-0.4460.0271No
187Cdc2015135-0.4470.0351No
188H2az215211-0.4570.0394No
189Pura15867-0.5580.0106No
190H2az116069-0.5990.0101No
191Hus116393-0.7170.0045No
192Orc616398-0.7180.0182No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT