Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Basophil.Basophil_Pheno.cls #Group1_versus_Group4.Basophil_Pheno.cls #Group1_versus_Group4_repos
Phenotype	Basophil_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.2641297
Normalized Enrichment Score (NES)	-1.1725776
Nominal p-value	0.15594542
FDR q-value	0.47775227
FWER p-Value	0.969

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Calu	102	0.787	0.0157	No
2	Fbn1	164	0.728	0.0323	No
3	Gpc1	249	0.679	0.0461	No
4	Jun	327	0.644	0.0594	No
5	Gem	385	0.621	0.0732	No
6	Sat1	616	0.556	0.0748	No
7	Anpep	706	0.533	0.0843	No
8	Col5a1	837	0.508	0.0905	No
9	Fstl1	853	0.505	0.1037	No
10	Fstl3	1308	0.433	0.0883	No
11	Slc6a8	1446	0.414	0.0916	No
12	Itgb3	1843	0.367	0.0779	No
13	Vcan	1846	0.367	0.0880	No
14	Serpine2	1905	0.359	0.0945	No
15	Efemp2	2091	0.343	0.0929	No
16	Col1a2	2264	0.328	0.0916	No
17	Cald1	2329	0.325	0.0968	No
18	Itgb5	2361	0.322	0.1039	No
19	Nid2	2401	0.318	0.1104	No
20	Lama2	2467	0.313	0.1151	No
21	Flna	2496	0.310	0.1221	No
22	Dab2	2504	0.309	0.1303	No
23	Copa	2509	0.309	0.1386	No
24	Col7a1	2515	0.309	0.1469	No
25	Cdh2	2527	0.308	0.1548	No
26	Id2	2549	0.306	0.1620	No
27	Itga2	2725	0.292	0.1596	No
28	Fas	2884	0.281	0.1578	No
29	Pcolce	3021	0.271	0.1572	No
30	Cd44	3188	0.260	0.1544	No
31	Cap2	3284	0.254	0.1557	No
32	Comp	3408	0.246	0.1552	No
33	Plod2	3450	0.243	0.1595	No
34	Tpm4	3512	0.239	0.1624	No
35	Notch2	3619	0.231	0.1624	No
36	Gja1	3866	0.214	0.1536	No
37	Sntb1	3953	0.209	0.1542	No
38	Edil3	3972	0.208	0.1589	No
39	Lamc1	4317	0.187	0.1433	No
40	Tnfaip3	4345	0.185	0.1469	No
41	Thbs1	4442	0.179	0.1460	No
42	Rhob	4600	0.170	0.1413	No
43	Pdgfrb	4617	0.169	0.1450	No
44	Nt5e	4836	0.157	0.1363	No
45	Vcam1	5145	0.140	0.1216	No
46	Bgn	5627	0.115	0.0958	No
47	Plod3	5930	0.100	0.0804	No
48	Fzd8	6101	0.091	0.0726	No
49	Cadm1	6154	0.088	0.0719	No
50	Fuca1	6172	0.087	0.0733	No
51	Mcm7	6242	0.083	0.0715	No
52	Tgfb1	7239	0.034	0.0124	No
53	Col16a1	7366	0.028	0.0055	No
54	Colgalt1	7607	0.015	-0.0085	No
55	Timp3	7803	0.006	-0.0201	No
56	Itga5	7834	0.004	-0.0218	No
57	Col1a1	7927	0.000	-0.0273	No
58	Itgb1	8192	-0.011	-0.0429	No
59	Ecm2	8311	-0.017	-0.0496	No
60	Pmepa1	8476	-0.023	-0.0588	No
61	Fn1	8696	-0.035	-0.0711	No
62	Magee1	8780	-0.039	-0.0750	No
63	Lrp1	9041	-0.053	-0.0892	No
64	Fap	9108	-0.056	-0.0916	No
65	Ecm1	9978	-0.101	-0.1412	No
66	Vegfa	10066	-0.105	-0.1435	No
67	Mmp2	10267	-0.116	-0.1524	No
68	Tgfbr3	10371	-0.121	-0.1552	No
69	Bmp1	10444	-0.125	-0.1560	No
70	Thy1	10524	-0.130	-0.1572	No
71	Tpm1	10574	-0.133	-0.1565	No
72	Gadd45b	10950	-0.153	-0.1748	No
73	Adam12	11019	-0.154	-0.1746	No
74	Wipf1	11262	-0.168	-0.1846	No
75	Itgav	11323	-0.171	-0.1834	No
76	Ppib	11360	-0.174	-0.1808	No
77	P3h1	11466	-0.179	-0.1821	No
78	Il6	11559	-0.185	-0.1825	No
79	Pfn2	11625	-0.189	-0.1812	No
80	Fgf2	11931	-0.206	-0.1938	No
81	Plaur	11940	-0.206	-0.1886	No
82	Spp1	12028	-0.211	-0.1880	No
83	Plod1	12157	-0.217	-0.1896	No
84	Mest	12778	-0.255	-0.2199	No
85	Glipr1	13379	-0.294	-0.2479	No
86	Mmp14	13493	-0.303	-0.2463	No
87	Pvr	13637	-0.312	-0.2463	No
88	Tgm2	13833	-0.324	-0.2491	No
89	Tnfrsf12a	14084	-0.343	-0.2546	Yes
90	Slit3	14186	-0.351	-0.2509	Yes
91	Capg	14244	-0.355	-0.2445	Yes
92	Il15	14250	-0.356	-0.2349	Yes
93	Qsox1	14352	-0.366	-0.2308	Yes
94	Cdh11	14506	-0.382	-0.2294	Yes
95	Vim	14540	-0.386	-0.2207	Yes
96	Col4a1	15000	-0.430	-0.2364	Yes
97	Sgcd	15150	-0.451	-0.2329	Yes
98	Sgcb	15235	-0.461	-0.2251	Yes
99	Slit2	15285	-0.467	-0.2151	Yes
100	Lama3	15373	-0.481	-0.2069	Yes
101	Dst	15614	-0.515	-0.2071	Yes
102	Tgfbi	15834	-0.554	-0.2049	Yes
103	Sfrp4	15860	-0.557	-0.1909	Yes
104	Vegfc	15875	-0.559	-0.1762	Yes
105	Gadd45a	15977	-0.578	-0.1662	Yes
106	Tpm2	16161	-0.626	-0.1599	Yes
107	Igfbp4	16293	-0.664	-0.1493	Yes
108	Basp1	16399	-0.719	-0.1356	Yes
109	Matn2	16501	-0.780	-0.1200	Yes
110	Col4a2	16504	-0.781	-0.0984	Yes
111	Lgals1	16525	-0.796	-0.0775	Yes
112	Emp3	16645	-0.957	-0.0581	Yes
113	Mylk	16668	-1.055	-0.0301	Yes
114	Ntm	16686	-1.147	0.0008	Yes