DatasetBasophil.Basophil_Pheno.cls
#Group1_versus_Group4.Basophil_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeBasophil_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class0
GeneSetHALLMARK_E2F_TARGETS
Enrichment Score (ES)0.40527558
Normalized Enrichment Score (NES)1.4327493
Nominal p-value0.1609658
FDR q-value0.2706095
FWER p-Value0.517
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_E2F_TARGETS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Zw101370.7480.0044Yes
2Bub1b1510.7350.0161Yes
3Xpo11850.7180.0262Yes
4Lmnb12100.7020.0367Yes
5Hnrnpd2390.6830.0466Yes
6Rrm22890.6640.0549Yes
7Ccp1102980.6560.0655Yes
8Pan23290.6440.0746Yes
9Mad2l13520.6320.0840Yes
10Cdkn2c3730.6260.0934Yes
11Racgap14040.6130.1020Yes
12Lbr4100.6110.1121Yes
13Top2a4140.6100.1222Yes
14Brms1l4340.6030.1313Yes
15Espl14540.5980.1403Yes
16Ddx39a4580.5970.1503Yes
17Tcf194650.5960.1600Yes
18Melk4830.5920.1690Yes
19Rad214940.5880.1784Yes
20Nbn6020.5590.1814Yes
21Wdr906220.5550.1897Yes
22Depdc1a6710.5430.1960Yes
23Anp32e7440.5270.2005Yes
24Ubr77910.5180.2065Yes
25Cit8300.5100.2129Yes
26Tra2b8430.5070.2208Yes
27Timeless8600.5040.2283Yes
28Cse1l8840.5010.2354Yes
29Aurka8980.4970.2431Yes
30Pold39460.4890.2485Yes
31Spag59590.4870.2561Yes
32Lyar9730.4840.2635Yes
33Rad51c10170.4770.2690Yes
34Asf1b10310.4740.2762Yes
35Trip1310640.4690.2823Yes
36Mcm611450.4570.2852Yes
37Mki6712660.4370.2853Yes
38Tubb512830.4360.2917Yes
39Cdc25b13150.4320.2972Yes
40Pole13410.4270.3029Yes
41Diaph313530.4260.3095Yes
42Tmpo13860.4220.3147Yes
43Ncapd214110.4170.3203Yes
44Ipo714170.4170.3271Yes
45Nup10714250.4160.3337Yes
46Bard114630.4130.3385Yes
47Mcm315070.4080.3428Yes
48Rbbp716070.3950.3435Yes
49Rfc116350.3910.3485Yes
50Syncrip16410.3900.3548Yes
51Slbp17050.3820.3575Yes
52Cdca817460.3780.3615Yes
53Kif2217990.3730.3647Yes
54Mre11a18260.3690.3693Yes
55Smc318650.3650.3732Yes
56Mcm218730.3640.3790Yes
57Cdk118760.3640.3850Yes
58Dlgap519490.3550.3867Yes
59Cenpe20420.3470.3870Yes
60Dnmt120730.3450.3910Yes
61Rad51ap122850.3280.3838Yes
62Mcm423000.3270.3885Yes
63Kif18b23330.3240.3921Yes
64Smc1a23470.3230.3968Yes
65Tbrg423980.3180.3991Yes
66Hmmr24930.3110.3987Yes
67Brca125510.3050.4004Yes
68Kif427340.2920.3943Yes
69Nop5627560.2890.3980Yes
70Pcna28710.2820.3959Yes
71Nap1l129130.2790.3981Yes
72Kif2c30730.2690.3930Yes
73Mlh131030.2670.3958Yes
74Eed31320.2630.3986Yes
75Msh231670.2610.4009Yes
76Nup20532430.2560.4007Yes
77H2ax33920.2480.3960Yes
78Mthfd234180.2450.3986Yes
79Ilf334540.2420.4006Yes
80Smc435880.2340.3965Yes
81Rad136330.2300.3978Yes
82Nasp36380.2300.4014Yes
83Shmt137220.2230.4002Yes
84Mcm538130.2170.3984Yes
85Pds5b38380.2160.4006Yes
86Gspt139020.2120.4004Yes
87Cdca339260.2110.4026Yes
88Chek139410.2100.4053Yes
89Plk140870.2020.3999No
90Asf1a41040.2010.4023No
91Atad241920.1950.4004No
92Rnaseh2a42470.1910.4003No
93Nup15343490.1850.3974No
94Mybl243980.1820.3975No
95Aurkb44340.1800.3985No
96Srsf246540.1670.3880No
97Stag147030.1640.3879No
98E2f848560.1560.3814No
99Hmgb349100.1530.3807No
100Cdc25a49280.1520.3823No
101Ak249290.1520.3849No
102Psip149840.1490.3841No
103Brca250280.1470.3840No
104Cbx551220.1410.3808No
105Pnn53540.1290.3689No
106Usp153580.1280.3709No
107Hells53740.1270.3722No
108Gins354090.1260.3723No
109Spc2554120.1260.3743No
110Prkdc55620.1180.3672No
111Cdkn1b58020.1070.3546No
112Dclre1b58290.1060.3548No
113Mms22l58360.1050.3562No
114Wee158840.1030.3551No
115Tacc359290.1010.3542No
116Prim260840.0920.3464No
117Mcm762420.0830.3383No
118Tipin63250.0780.3346No
119Ezh267080.0590.3125No
120Ctcf68320.0520.3059No
121Cdkn2a70240.0430.2951No
122Paics70780.0400.2925No
123Suv39h171800.0350.2870No
124Rfc372680.0320.2823No
125Pola273190.0300.2798No
126Ppp1r873420.0290.2789No
127Myc73690.0280.2778No
128Psmc3ip75900.0160.2648No
129Plk476210.0150.2632No
130Ccne176480.0140.2619No
131Dck77330.0100.2569No
132Jpt177550.0080.2558No
133Spc2478300.0050.2514No
134Dek8126-0.0070.2336No
135Srsf18240-0.0130.2270No
136Dut8314-0.0170.2229No
137Eif2s18369-0.0190.2199No
138Cnot98452-0.0220.2153No
139Exosc88588-0.0290.2077No
140Lsm88685-0.0340.2024No
141Pa2g48813-0.0400.1954No
142Hmgb28855-0.0430.1936No
143Nolc19110-0.0570.1792No
144Ccnb29123-0.0570.1795No
145Ube2s9306-0.0670.1696No
146Cks29432-0.0750.1633No
147Lig19522-0.0790.1592No
148Ssrp19616-0.0830.1550No
149Tk19732-0.0900.1495No
150Cdkn39738-0.0900.1508No
151Smc610001-0.1020.1366No
152Chek210098-0.1070.1326No
153Rpa210101-0.1070.1343No
154Dctpp110102-0.1070.1361No
155Cdkn1a10188-0.1120.1329No
156Nudt2110309-0.1180.1276No
157Rpa110354-0.1200.1270No
158Birc510517-0.1300.1194No
159Luc7l310643-0.1360.1141No
160Dscc110724-0.1400.1116No
161Pold210762-0.1420.1118No
162Snrpb11135-0.1600.0920No
163Xrcc611312-0.1710.0842No
164Mxd311575-0.1860.0715No
165Donson11614-0.1880.0724No
166Rad5011871-0.2020.0603No
167Stmn111927-0.2060.0605No
168Hmga1b12081-0.2130.0548No
169Pttg112292-0.2270.0459No
170Ran12454-0.2370.0402No
171Rfc212625-0.2460.0341No
172Ranbp112926-0.2620.0203No
173Prps112930-0.2620.0246No
174Trp5312991-0.2670.0255No
175Gins113013-0.2680.0288No
176Ing313082-0.2730.0293No
177Prdx413289-0.2870.0217No
178Ung13428-0.2970.0183No
179Pms213448-0.2980.0223No
180Pop713471-0.3010.0260No
181Rpa313644-0.3120.0209No
182Tubg113811-0.3220.0163No
183Cdk414663-0.397-0.0285No
184Orc214813-0.410-0.0306No
185Phf5a14920-0.421-0.0299No
186Cks1b15123-0.446-0.0346No
187Cdc2015135-0.447-0.0276No
188Pold115294-0.469-0.0293No
189Ppm1d15514-0.499-0.0341No
190Cenpm15713-0.534-0.0370No
191H2az116069-0.599-0.0483No
192Gins416162-0.626-0.0433No
193Ube2t16187-0.633-0.0340No
194Nme116357-0.694-0.0325No
195Tfrc16370-0.702-0.0213No
196Hus116393-0.717-0.0105No
197Orc616398-0.7180.0015No
198Pole416653-0.9840.0028No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_E2F_TARGETS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_E2F_TARGETS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_E2F_TARGETS