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"TCGCT":840555, "TCGCC":606506, "TCGCG":385819, "TCGGA":615957, "TCGGT":597297, "TCGGC":926718, "TCGGG":991924, "TGAAA":2543779, "TGAAT":1822806, "TGAAC":1549501, "TGAAG":2576475, "TGATA":1286799, "TGATT":1721205, "TGATC":2066977, "TGATG":2483658, "TGACA":1778564, "TGACT":1684696, "TGACC":1546137, "TGACG":562158, "TGAGA":2304801, "TGAGT":1612286, "TGAGC":1831650, "TGAGG":2650283, "TGTAA":1785413, "TGTAT":1415135, "TGTAC":1150132, "TGTAG":1686439, "TGTTA":1313143, "TGTTT":2850095, "TGTTC":1966138, "TGTTG":2413129, "TGTCA":2045219, "TGTCT":2377269, "TGTCC":1875977, "TGTCG":535169, "TGTGA":1797461, "TGTGT":2079908, "TGTGC":1539768, "TGTGG":2319247, "TGCAA":1640760, "TGCAT":1622979, "TGCAC":1411562, "TGCAG":3092604, "TGCTA":1094154, "TGCTT":2390093, "TGCTC":2283746, "TGCTG":2963363, "TGCCA":2422154, "TGCCT":2302902, "TGCCC":1999752, "TGCCG":873920, "TGCGA":370342, "TGCGT":465122, "TGCGC":560624, "TGCGG":826090, "TGGAA":2685469, "TGGAT":1812956, "TGGAC":1474213, "TGGAG":3378874, 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"CTCCC":3211400, "CTCCG":1448626, "CTCGA":735778, "CTCGT":958372, "CTCGC":862050, "CTCGG":1276206, "CTGAA":2538555, "CTGAT":2332471, "CTGAC":1509687, "CTGAG":2768102, "CTGTA":1895898, "CTGTT":2359172, "CTGTC":2133685, "CTGTG":2573775, "CTGCA":2730729, "CTGCT":3345981, "CTGCC":2662251, "CTGCG":818968, "CTGGA":3629743, "CTGGT":2720162, "CTGGC":2576311, "CTGGG":4068442, "CCAAA":2600329, "CCAAT":1587271, "CCAAC":1530480, "CCAAG":2097987, "CCATA":1537897, "CCATT":2041186, "CCATC":2218610, "CCATG":2095925, "CCACA":2933359, "CCACT":2926260, "CCACC":2881456, "CCACG":1184457, "CCAGA":2471055, "CCAGT":2173940, "CCAGC":3257740, "CCAGG":4191331, "CCTAA":938015, "CCTAT":882863, "CCTAC":1146457, "CCTAG":952955, "CCTTA":1513772, "CCTTT":2518054, "CCTTC":3042648, "CCTTG":2585481, "CCTCA":2787337, "CCTCT":3006150, "CCTCC":3938973, "CCTCG":1232614, "CCTGA":2132321, "CCTGT":2257882, "CCTGC":2739325, "CCTGG":3872655, "CCCAA":2077625, "CCCAT":1826379, "CCCAC":2957401, "CCCAG":3610002, "CCCTA":1035200, "CCCTT":1988144, "CCCTC":2492230, "CCCTG":2319424, "CCCCA":2737715, "CCCCT":2096640, "CCCCC":2519338, "CCCCG":1791366, "CCCGA":984238, "CCCGT":744998, "CCCGC":1567540, "CCCGG":1804187, "CCGAA":759240, "CCGAT":452421, "CCGAC":1020098, "CCGAG":989668, "CCGTA":368988, "CCGTT":787817, "CCGTC":868226, "CCGTG":851378, "CCGCA":763063, "CCGCT":1163835, "CCGCC":1398025, "CCGCG":754353, "CCGGA":902523, "CCGGT":1019547, "CCGGC":1634066, "CCGGG":1821838, "CGAAA":408210, "CGAAT":380451, "CGAAC":576782, "CGAAG":877042, "CGATA":254681, "CGATT":455854, "CGATC":1198314, "CGATG":791405, "CGACA":464992, "CGACT":445497, "CGACC":787331, "CGACG":638888, "CGAGA":659847, "CGAGT":461975, "CGAGC":686939, "CGAGG":1128858, "CGTAA":303523, "CGTAT":341148, "CGTAC":336598, "CGTAG":531875, "CGTTA":254179, "CGTTT":862010, "CGTTC":944732, "CGTTG":587030, "CGTCA":607845, "CGTCT":895117, "CGTCC":793519, "CGTCG":444905, "CGTGA":588339, "CGTGT":589450, "CGTGC":660299, "CGTGG":887463, "CGCAA":362341, "CGCAT":370391, "CGCAC":677545, "CGCAG":875928, "CGCTA":379148, "CGCTT":706904, "CGCTC":1221884, "CGCTG":881576, "CGCCA":938400, "CGCCT":1046646, "CGCCC":1053225, "CGCCG":887315, "CGCGA":961832, "CGCGT":381264, "CGCGC":865573, "CGCGG":998749, "CGGAA":659599, "CGGAT":615384, "CGGAC":618452, "CGGAG":1175554, "CGGTA":427089, "CGGTT":749643, "CGGTC":790494, "CGGTG":905425, "CGGCA":869873, "CGGCT":889787, "CGGCC":1693966, "CGGCG":1440086, "CGGGA":1722246, "CGGGT":742613, "CGGGC":1581173, "CGGGG":2103486, "GAAAA":3063312, "GAAAT":2027310, "GAAAC":1625995, "GAAAG":2217520, "GAATA":1315760, "GAATT":1615507, "GAATC":1286155, "GAATG":1664471, "GAACA":1678525, "GAACT":1696275, "GAACC":1246716, "GAACG":506475, "GAAGA":2791468, "GAAGT":1902848, "GAAGC":1998918, "GAAGG":2657371, "GATAA":1208626, "GATAT":952749, "GATAC":738729, "GATAG":982384, "GATTA":1100141, "GATTT":1890948, "GATTC":1331063, "GATTG":878444, "GATCA":2036461, "GATCT":1646480, "GATCC":1829804, "GATCG":420504, "GATGA":1991301, "GATGT":1759792, "GATGC":1536459, "GATGG":2248541, "GACAA":1378883, "GACAT":1279945, "GACAC":1358568, "GACAG":2066433, "GACTA":846647, "GACTT":1431741, "GACTC":1175328, "GACTG":1453274, "GACCA":1408482, "GACCT":1791301, "GACCC":1129612, "GACCG":695532, "GACGA":674221, "GACGT":453463, "GACGC":615964, "GACGG":1023314, "GAGAA":2538906, "GAGAT":1608686, "GAGAC":1620936, "GAGAG":2533200, "GAGTA":1116318, "GAGTT":1742130, "GAGTC":1457079, "GAGTG":1968985, "GAGCA":1688309, "GAGCT":1886548, "GAGCC":1867180, "GAGCG":939238, "GAGGA":2667666, "GAGGT":2295424, "GAGGC":2750987, "GAGGG":2863405, "GTAAA":1524970, "GTAAT":1255894, "GTAAC":901952, "GTAAG":1034731, "GTATA":853032, "GTATT":1334105, "GTATC":800297, "GTATG":880946, "GTACA":1336714, "GTACT":1143397, "GTACC":717623, "GTACG":308672, "GTAGA":1339194, "GTAGT":1286339, "GTAGC":1180263, "GTAGG":1427956, "GTTAA":1118359, "GTTAT":995235, "GTTAC":785142, "GTTAG":819088, "GTTTA":1344997, "GTTTT":2916661, "GTTTC":2340929, "GTTTG":1752382, "GTTCA":2140322, "GTTCT":2545009, "GTTCC":1669505, "GTTCG":418341, "GTTGA":1507155, "GTTGT":1598120, "GTTGC":1428864, "GTTGG":1791789, "GTCAA":1391628, "GTCAT":1668144, "GTCAC":1883382, "GTCAG":2026046, "GTCTA":834604, "GTCTT":2345728, "GTCTC":2161835, "GTCTG":2137539, "GTCCA":2062169, "GTCCT":1998899, "GTCCC":2008954, "GTCCG":582785, "GTCGA":397650, "GTCGT":541802, "GTCGC":506420, "GTCGG":756182, "GTGAA":1760612, "GTGAT":1566156, "GTGAC":1284625, "GTGAG":1877283, "GTGTA":1140761, "GTGTT":1504449, "GTGTC":1402442, "GTGTG":1836202, "GTGCA":1968546, "GTGCT":1692547, "GTGCC":1509942, "GTGCG":563052, "GTGGA":1841772, "GTGGT":2440129, "GTGGC":2738976, "GTGGG":2417174, "GCAAA":1852135, "GCAAT":1326137, "GCAAC":1458705, "GCAAG":1425410, "GCATA":977858, "GCATT":1506760, "GCATC":1609204, "GCATG":1468771, "GCACA":1908809, "GCACT":1620134, "GCACC":1513163, "GCACG":1354172, "GCAGA":2311034, "GCAGT":2286832, "GCAGC":2626392, "GCAGG":3070308, "GCTAA":969369, "GCTAT":1626366, "GCTAC":933010, "GCTAG":770476, "GCTTA":894578, "GCTTT":2199822, "GCTTC":2399408, "GCTTG":2181558, "GCTCA":2209577, "GCTCT":2120645, "GCTCC":2909998, "GCTCG":752795, "GCTGA":2204406, "GCTGT":2162355, "GCTGC":2420549, "GCTGG":3869732, "GCCAA":1779929, "GCCAT":1781215, "GCCAC":2271363, "GCCAG":2908837, "GCCTA":743025, "GCCTT":2058619, "GCCTC":2624589, "GCCTG":2583523, "GCCCA":2278918, "GCCCT":1785170, "GCCCC":2131763, "GCCCG":1155345, "GCCGA":909117, "GCCGT":702140, "GCCGC":1156993, "GCCGG":1871431, "GCGAA":357512, "GCGAT":1110949, "GCGAC":495891, "GCGAG":911751, "GCGTA":314759, "GCGTT":522510, "GCGTC":591638, "GCGTG":684821, "GCGCA":662159, "GCGCT":682566, "GCGCC":1016570, "GCGCG":1758479, "GCGGA":904031, "GCGGT":725461, "GCGGC":1530420, "GCGGG":1825946, "GGAAA":2572889, "GGAAT":1673190, "GGAAC":1423912, "GGAAG":3224341, "GGATA":1047652, "GGATT":1445131, "GGATC":1357621, "GGATG":2157388, "GGACA":1821527, "GGACT":1400237, "GGACC":1328293, "GGACG":852126, "GGAGA":2745245, "GGAGT":2697655, "GGAGC":1983167, "GGAGG":4234770, "GGTAA":1174799, "GGTAT":986312, "GGTAC":1031059, "GGTAG":1419063, "GGTTA":922660, "GGTTT":1970262, "GGTTC":1855429, "GGTTG":1600041, "GGTCA":2130174, "GGTCT":2068460, "GGTCC":2072958, "GGTCG":686889, "GGTGA":2139599, "GGTGT":1717284, "GGTGC":1579805, "GGTGG":3525768, "GGCAA":2149933, "GGCAT":1900922, "GGCAC":1888150, "GGCAG":3529092, "GGCTA":1548822, "GGCTT":2081606, "GGCTC":2163340, "GGCTG":3879061, "GGCCA":2605299, "GGCCT":2298696, "GGCCC":2266325, "GGCCG":1821515, "GGCGA":916112, "GGCGT":789355, "GGCGC":1951863, "GGCGG":2279096, "GGGAA":2597951, "GGGAT":1657377, "GGGAC":1692705, "GGGAG":4045284, "GGGTA":1202036, "GGGTT":1676154, "GGGTC":1851510, "GGGTG":2493793, "GGGCA":2723986, "GGGCT":2385573, "GGGCC":2696922, "GGGCG":1640629, "GGGGA":2993739, "GGGGT":2409889, "GGGGC":2824537, "GGGGG":3572740 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 31902698, "total_bases": 1882259182, "q20_bases": 1837651893, "q30_bases": 1781841831, 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"mean":[33.1169,33.1569,33.0235,33.0734,33.1596,33.146,33.2107,33.218,33.2687,33.2159,33.2271,33.2336,33.2494,33.2462,33.2534,33.2467,33.2258,33.2425,33.2458,33.2296,33.2346,33.2317,33.2386,33.2407,33.242,33.3187,33.3087,33.3072,33.3079,33.306,33.3051,33.2991,33.2913,33.2917,33.291,33.2881,33.2879,33.28,33.2786,33.2842,33.2827,33.273,33.2786,33.2685,33.28,33.0162,33.2687,33.2741,33.2656,33.266,33.2624,33.2599,33.2584,33.257,33.2484,33.2415,33.2505,33.2452,33.0438] }, "content_curves": { 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"GC":[0.778417,0.567791,0.573441,0.57622,0.504762,0.472465,0.380006,0.454864,0.441354,0.414985,0.505502,0.475034,0.471563,0.469138,0.475699,0.482156,0.47486,0.479735,0.483966,0.480593,0.480319,0.48299,0.47639,0.477683,0.482729,0.482593,0.486471,0.486642,0.490818,0.490227,0.494745,0.489582,0.490838,0.49428,0.488001,0.48839,0.491817,0.491819,0.49164,0.495127,0.490825,0.485608,0.494284,0.489585,0.489064,0.495135,0.487311,0.489087,0.494511,0.488808,0.497189,0.499032,0.494848,0.497614,0.501652,0.498866,0.496913,0.49614,0.493548] }, "kmer_count": { "AAAAA":7221245, "AAAAT":3892664, "AAAAC":2567632, "AAAAG":2981414, "AAATA":3016054, "AAATT":2691976, "AAATC":1915436, "AAATG":2635523, "AAACA":2929031, "AAACT":2188489, "AAACC":1579907, "AAACG":496217, "AAAGA":2803549, "AAAGT":2240839, "AAAGC":1892431, "AAAGG":2364858, "AATAA":2471531, "AATAT":1894502, "AATAC":1431847, "AATAG":1272715, "AATTA":1780511, "AATTT":2781954, "AATTC":1842228, "AATTG":1247326, "AATCA":1815583, "AATCT":1856398, 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"CTCCC":3164228, "CTCCG":1424673, "CTCGA":728921, "CTCGT":949641, "CTCGC":849360, "CTCGG":1264367, "CTGAA":2518552, "CTGAT":2315811, "CTGAC":1498093, "CTGAG":2747452, "CTGTA":1882362, "CTGTT":2343377, "CTGTC":2116676, "CTGTG":2555578, "CTGCA":2710378, "CTGCT":3321302, "CTGCC":2642072, "CTGCG":811831, "CTGGA":3602645, "CTGGT":2700057, "CTGGC":2556409, "CTGGG":4036280, "CCAAA":2573936, "CCAAT":1573814, "CCAAC":1514518, "CCAAG":2081342, "CCATA":1524708, "CCATT":2026729, "CCATC":2201043, "CCATG":2080153, "CCACA":2906556, "CCACT":2903733, "CCACC":2851721, "CCACG":1171541, "CCAGA":2450006, "CCAGT":2157511, "CCAGC":3231488, "CCAGG":4158572, "CCTAA":929569, "CCTAT":876241, "CCTAC":1136904, "CCTAG":945511, "CCTTA":1502291, "CCTTT":2501656, "CCTTC":3018218, "CCTTG":2566887, "CCTCA":2766188, "CCTCT":2981407, "CCTCC":3898515, "CCTCG":1221344, "CCTGA":2116783, "CCTGT":2242113, "CCTGC":2718586, "CCTGG":3842726, "CCCAA":2059350, "CCCAT":1812705, "CCCAC":2929058, "CCCAG":3580890, "CCCTA":1026883, 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"total_cycles": 59, "quality_curves": { "A":[33.4583,33.1316,32.6008,32.726,32.9323,32.9397,32.8871,32.9601,33.1023,33.0603,32.9968,32.9113,33.0721,33.0314,33.0362,33.0206,32.9955,33.0242,33.0109,32.9928,32.9958,32.9774,32.9933,32.9902,32.9779,33.1354,33.1235,33.1158,33.1133,33.1204,33.1162,33.0987,33.1045,33.0933,33.0862,33.1011,33.0752,33.0711,33.0743,33.0695,33.0596,33.0437,33.0705,33.0465,33.0672,33.0324,33.0483,33.0316,33.0139,33.0263,33.0142,33.0079,32.9926,32.9941,32.9763,32.9582,32.9775,32.9885,32.4141], "T":[33.1482,33.3429,33.4355,33.4311,33.4092,33.4055,33.4498,33.4148,33.4404,33.4504,33.3934,33.4425,33.4452,33.4425,33.4573,33.4539,33.411,33.4336,33.45,33.4165,33.4409,33.4254,33.4368,33.44,33.4472,33.5172,33.5082,33.5007,33.4993,33.5075,33.5084,33.4957,33.4838,33.4823,33.4766,33.4816,33.4778,33.4657,33.4572,33.4666,33.4674,33.467,33.4591,33.4535,33.4707,33.4423,33.4402,33.4731,33.4662,33.4636,33.4606,33.4578,33.4634,33.4602,33.4528,33.4565,33.459,33.4502,33.3397], 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"mean":[33.1821,33.2444,33.1182,33.1675,33.2562,33.2443,33.3089,33.3185,33.3694,33.3156,33.3276,33.335,33.351,33.348,33.3555,33.349,33.3294,33.3456,33.3494,33.3339,33.3381,33.3353,33.343,33.3445,33.346,33.4228,33.4134,33.4122,33.4118,33.4104,33.4097,33.4035,33.396,33.3964,33.395,33.3936,33.3921,33.3852,33.3827,33.3885,33.3869,33.3775,33.3826,33.3726,33.3828,33.1178,33.3718,33.377,33.3685,33.3685,33.3648,33.3629,33.3608,33.3594,33.3507,33.3434,33.3515,33.3465,33.1435] }, "content_curves": { 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"AGAGA":3727634, "AGAGT":1694817, "AGAGC":2221363, "AGAGG":2994540, "AGTAA":1246294, "AGTAT":1147230, "AGTAC":1125012, "AGTAG":1246814, "AGTTA":1089501, "AGTTT":2131729, "AGTTC":2348907, "AGTTG":1490185, "AGTCA":1520022, "AGTCT":1477133, "AGTCC":2130641, "AGTCG":516615, "AGTGA":2328974, "AGTGT":1647440, "AGTGC":2140794, "AGTGG":2374363, "AGCAA":2169551, "AGCAT":1566861, "AGCAC":1705631, "AGCAG":3288933, "AGCTA":1711120, "AGCTT":1758706, "AGCTC":1940572, "AGCTG":3527154, "AGCCA":2762327, "AGCCT":2523211, "AGCCC":2500472, "AGCCG":1017076, "AGCGA":762784, "AGCGT":567390, "AGCGC":836851, "AGCGG":1098205, "AGGAA":3569036, "AGGAT":2696994, "AGGAC":2018072, "AGGAG":4632377, "AGGTA":1002594, "AGGTT":1581045, "AGGTC":1442929, "AGGTG":2813478, "AGGCA":2341911, "AGGCT":3323815, "AGGCC":2394618, "AGGCG":1268980, "AGGGA":2206052, "AGGGT":1601938, "AGGGC":2001687, "AGGGG":1847220, "TAAAA":2629182, "TAAAT":1643993, "TAAAC":1073349, "TAAAG":1687577, "TAATA":1157687, "TAATT":1557839, "TAATC":1032049, "TAATG":1223528, "TAACA":1205599, "TAACT":1047321, "TAACC":809286, "TAACG":256274, "TAAGA":1340339, "TAAGT":1204405, "TAAGC":866261, "TAAGG":1114455, "TATAA":1139040, "TATAT":1166305, "TATAC":716617, "TATAG":831681, "TATTA":1200460, "TATTT":2451718, "TATTC":1217750, "TATTG":1204506, "TATCA":1194357, "TATCT":1146704, "TATCC":911222, "TATCG":256853, "TATGA":1434631, "TATGT":1271641, "TATGC":1248625, "TATGG":1314664, "TACAA":1558470, "TACAT":1205284, "TACAC":935717, "TACAG":1719895, "TACTA":1004642, "TACTT":1325978, "TACTC":1482475, "TACTG":1320634, "TACCA":1345498, "TACCT":1300667, "TACCC":948689, "TACCG":374470, "TACGA":418783, "TACGT":348739, "TACGC":316957, "TACGG":332270, "TAGAA":1592470, "TAGAT":931167, "TAGAC":726916, "TAGAG":1419570, "TAGTA":817014, "TAGTT":984403, "TAGTC":1074819, "TAGTG":1431863, "TAGCA":1029904, "TAGCT":1165594, "TAGCC":888494, "TAGCG":252910, "TAGGA":1111314, "TAGGT":710432, "TAGGC":842097, "TAGGG":772049, "TTAAA":2397075, "TTAAT":1528691, "TTAAC":936499, "TTAAG":1340179, "TTATA":1169144, "TTATT":2072859, "TTATC":1075863, "TTATG":1269337, "TTACA":1569564, "TTACT":1332807, "TTACC":997525, "TTACG":276472, "TTAGA":1228097, "TTAGT":1025569, "TTAGC":896606, "TTAGG":859172, "TTTAA":2427496, "TTTAT":2202712, "TTTAC":1287957, "TTTAG":1373425, "TTTTA":2798589, "TTTTT":5784590, "TTTTC":2736843, "TTTTG":2957848, "TTTCA":2313354, "TTTCT":3246102, "TTTCC":2309702, "TTTCG":442223, "TTTGA":2662239, "TTTGT":2634802, "TTTGC":1774685, "TTTGG":2462388, "TTCAA":2041051, "TTCAT":1966424, "TTCAC":1626139, "TTCAG":2400349, "TTCTA":1501186, "TTCTT":2772244, "TTCTC":2430994, "TTCTG":3223102, "TTCCA":2357331, "TTCCT":2946738, "TTCCC":2221405, "TTCCG":661475, "TTCGA":699268, "TTCGT":582489, "TTCGC":509745, "TTCGG":1005753, "TTGAA":2498873, "TTGAT":1912122, "TTGAC":1276994, "TTGAG":2647302, "TTGTA":1430826, "TTGTT":2137489, "TTGTC":1336784, "TTGTG":1909522, "TTGCA":1602929, "TTGCT":1945348, "TTGCC":1771188, "TTGCG":398299, "TTGGA":2297952, "TTGGT":1726456, "TTGGC":1758873, "TTGGG":1952310, "TCAAA":2069720, "TCAAT":1273006, "TCAAC":1425159, "TCAAG":2309341, "TCATA":1018756, "TCATT":1903930, "TCATC":1945873, "TCATG":1793514, "TCACA":1712717, "TCACT":1875526, "TCACC":2209304, "TCACG":541849, "TCAGA":2341893, "TCAGT":1818267, "TCAGC":2131888, "TCAGG":2144807, "TCTAA":1128462, "TCTAT":1087981, "TCTAC":1292910, "TCTAG":990748, "TCTTA":1259689, "TCTTT":2569148, "TCTTC":2527734, "TCTTG":1894159, "TCTCA":2125965, "TCTCT":2581154, "TCTCC":2425678, "TCTCG":767742, "TCTGA":2229514, "TCTGT":2435700, "TCTGC":2187006, "TCTGG":3219889, "TCCAA":1766627, "TCCAT":1702548, "TCCAC":1747878, "TCCAG":3120532, "TCCTA":1320646, "TCCTT":2137110, "TCCTC":2570686, "TCCTG":3480405, "TCCCA":2997797, "TCCCT":2458389, "TCCCC":2405887, "TCCCG":1224177, "TCCGA":613064, "TCCGT":591645, "TCCGC":1249449, "TCCGG":1000067, "TCGAA":595589, "TCGAT":399828, "TCGAC":431223, "TCGAG":789502, "TCGTA":328185, "TCGTT":438620, "TCGTC":636706, "TCGTG":915888, "TCGCA":453675, "TCGCT":1471567, "TCGCC":1050180, "TCGCG":352872, "TCGGA":678241, "TCGGT":570394, "TCGGC":1231517, "TCGGG":1840891, "TGAAA":3023817, "TGAAT":1880970, "TGAAC":2014644, "TGAAG":3629020, "TGATA":1194350, "TGATT":1913029, "TGATC":1889613, "TGATG":2561125, "TGACA":1964675, "TGACT":1815926, "TGACC":1973226, "TGACG":597995, "TGAGA":2636349, "TGAGT":1917373, "TGAGC":2480037, "TGAGG":3243059, "TGTAA":1481683, "TGTAT":1446635, "TGTAC":1099433, "TGTAG":2039663, "TGTTA":1295707, "TGTTT":2672816, "TGTTC":1631147, "TGTTG":2050707, "TGTCA":1847402, "TGTCT":2072467, "TGTCC":2196164, "TGTCG":686283, "TGTGA":2297629, "TGTGT":2418356, "TGTGC":1973321, "TGTGG":2853981, "TGCAA":1631509, "TGCAT":1365598, "TGCAC":1363916, "TGCAG":2896160, "TGCTA":1149620, "TGCTT":1932066, "TGCTC":1742613, "TGCTG":3366009, "TGCCA":2405841, "TGCCT":3083210, "TGCCC":2370011, "TGCCG":1254248, "TGCGA":451410, "TGCGT":568711, "TGCGC":1288463, "TGCGG":828387, "TGGAA":3180218, "TGGAT":2065656, "TGGAC":2033103, "TGGAG":4180610, "TGGTA":1192365, "TGGTT":1732003, "TGGTC":1538807, "TGGTG":3422852, "TGGCA":2459270, "TGGCT":2976772, "TGGCC":2740245, "TGGCG":1253630, "TGGGA":3230789, "TGGGT":1866481, "TGGGC":2812608, "TGGGG":2791920, "CAAAA":2805091, "CAAAT":1754837, "CAAAC":1619798, "CAAAG":2696235, "CAATA":1167010, "CAATT":1113356, "CAATC":865702, "CAATG":1600456, "CAACA":2241439, "CAACT":1504434, "CAACC":1534234, "CAACG":598993, "CAAGA":3019213, "CAAGT":1827237, "CAAGC":1875994, "CAAGG":2477377, "CATAA":1019306, "CATAT":1030191, "CATAC":726506, "CATAG":872044, "CATTA":1081420, "CATTT":2277144, "CATTC":1513587, "CATTG":1930350, "CATCA":2449604, "CATCT":2198264, "CATCC":1973567, "CATCG":828165, "CATGA":1928286, "CATGT":1828399, "CATGC":1449135, "CATGG":2265881, "CACAA":1625934, "CACAT":1494267, "CACAC":1611431, "CACAG":2569970, "CACTA":1186864, "CACTT":1668071, "CACTC":1444530, "CACTG":2481739, "CACCA":2770878, "CACCT":2234040, "CACCC":2188831, "CACCG":1056899, "CACGA":626866, "CACGT":593382, "CACGC":701438, "CACGG":824559, "CAGAA":3380082, "CAGAT":2218772, "CAGAC":1896283, "CAGAG":3218555, "CAGTA":1335312, "CAGTT":1862372, "CAGTC":1468643, "CAGTG":2883037, "CAGCA":2963349, "CAGCT":3199860, "CAGCC":3287111, "CAGCG":1026760, "CAGGA":3765669, "CAGGT":2083820, "CAGGC":2691415, "CAGGG":2534165, "CTAAA":1425398, "CTAAT":1029573, "CTAAC":777660, "CTAAG":1391358, "CTATA":838427, "CTATT":1179769, "CTATC":856015, "CTATG":1628249, "CTACA":1599232, "CTACT":1937499, "CTACC":1239822, "CTACG":528292, "CTAGA":1157207, "CTAGT":756679, "CTAGC":730496, "CTAGG":1086143, "CTTAA":1263299, "CTTAT":1061761, "CTTAC":942381, "CTTAG":983135, "CTTTA":1457547, "CTTTT":2724652, "CTTTC":1999350, "CTTTG":2595279, "CTTCA":2520735, "CTTCT":2652439, "CTTCC":2872488, "CTTCG":967267, "CTTGA":2456265, "CTTGT":1484088, "CTTGC":1412217, "CTTGG":2179534, "CTCAA":1894082, "CTCAT":1755842, "CTCAC":1910321, "CTCAG":2812401, "CTCTA":1271910, "CTCTT":2169474, "CTCTC":2122651, "CTCTG":2972288, "CTCCA":2668569, "CTCCT":3096361, "CTCCC":3157293, "CTCCG":1212724, "CTCGA":551021, "CTCGT":611666, "CTCGC":865851, "CTCGG":1689084, "CTGAA":2907934, "CTGAT":1958465, "CTGAC":1857956, "CTGAG":3637413, "CTGTA":2394613, "CTGTT":2006402, "CTGTC":2122526, "CTGTG":3039775, "CTGCA":2637034, "CTGCT":2812835, "CTGCC":3112484, "CTGCG":1065535, "CTGGA":3993377, "CTGGT":2261836, "CTGGC":3158728, "CTGGG":4173764, "CCAAA":2389652, "CCAAT":1096302, "CCAAC":1637326, "CCAAG":2774465, "CCATA":894682, "CCATT":1779721, "CCATC":2170509, "CCATG":2360794, "CCACA":2188275, "CCACT":1898014, "CCACC":2893824, "CCACG":975808, "CCAGA":2981170, "CCAGT":2007378, "CCAGC":3751086, "CCAGG":4088234, "CCTAA":1178740, "CCTAT":1004090, "CCTAC":1235097, "CCTAG":1060238, "CCTTA":1068832, "CCTTT":2094767, "CCTTC":2546013, "CCTTG":1896930, "CCTCA":2663063, "CCTCT":2426404, "CCTCC":3786994, "CCTCG":1159884, "CCTGA":2818724, "CCTGT":2826306, "CCTGC":2904392, "CCTGG":4095974, "CCCAA":2062681, "CCCAT":1777972, "CCCAC":2086381, "CCCAG":4487178, "CCCTA":1090743, "CCCTT":1964799, "CCCTC":2640041, "CCCTG":3142792, "CCCCA":2841737, "CCCCT":2367800, "CCCCC":2550845, "CCCCG":1726794, "CCCGA":1053194, "CCCGT":805288, "CCCGC":1572069, "CCCGG":1821842, "CCGAA":781355, "CCGAT":823114, "CCGAC":693697, "CCGAG":1371290, "CCGTA":325427, "CCGTT":428879, "CCGTC":842983, "CCGTG":1070044, "CCGCA":1134143, "CCGCT":913858, "CCGCC":2186949, "CCGCG":1188014, "CCGGA":968752, "CCGGT":662778, "CCGGC":1822465, "CCGGG":1780033, "CGAAA":738810, "CGAAT":433212, "CGAAC":465912, "CGAAG":851426, "CGATA":312059, "CGATT":400643, "CGATC":782937, "CGATG":611901, "CGACA":631352, "CGACT":449624, "CGACC":695712, "CGACG":525709, "CGAGA":1168532, "CGAGT":703702, "CGAGC":912096, "CGAGG":1353381, "CGTAA":279297, "CGTAT":255902, "CGTAC":292627, "CGTAG":319674, "CGTTA":254370, "CGTTT":510256, "CGTTC":492239, "CGTTG":501857, "CGTCA":572576, "CGTCT":687952, "CGTCC":956276, "CGTCG":490350, "CGTGA":813540, "CGTGT":937168, "CGTGC":1195468, "CGTGG":1394853, "CGCAA":581787, "CGCAT":437403, "CGCAC":869742, "CGCAG":886645, "CGCTA":767089, "CGCTT":1318107, "CGCTC":930307, "CGCTG":994100, "CGCCA":1154503, "CGCCT":1236309, "CGCCC":1544385, "CGCCG":1429738, "CGCGA":426034, "CGCGT":759142, "CGCGC":976351, "CGCGG":1090137, "CGGAA":909667, "CGGAT":463389, "CGGAC":640556, "CGGAG":1238446, "CGGTA":269821, "CGGTT":466638, "CGGTC":725217, "CGGTG":1211597, "CGGCA":1016680, "CGGCT":1254512, "CGGCC":1669695, "CGGCG":1461299, "CGGGA":1779876, "CGGGT":1261726, "CGGGC":1418613, "CGGGG":1905617, "GAAAA":3889605, "GAAAT":2541694, "GAAAC":2258625, "GAAAG":2955748, "GAATA":1263944, "GAATT":1841993, "GAATC":1360400, "GAATG":2020442, "GAACA":2095538, "GAACT":1890891, "GAACC":1652155, "GAACG":846913, "GAAGA":4614456, "GAAGT":2235383, "GAAGC":2722073, "GAAGG":3467887, "GATAA":1242277, "GATAT":1059603, "GATAC":769034, "GATAG":822899, "GATTA":1212313, "GATTT":1886957, "GATTC":1470629, "GATTG":1401052, "GATCA":1654644, "GATCT":1697534, "GATCC":1507795, "GATCG":1760322, "GATGA":2732300, "GATGT":1618086, "GATGC":1609469, "GATGG":2340973, "GACAA":1849710, "GACAT":1623091, "GACAC":1325447, "GACAG":2189396, "GACTA":926121, "GACTT":1683145, "GACTC":1397051, "GACTG":1733321, "GACCA":2087418, "GACCT":1951311, "GACCC":1757895, "GACCG":806336, "GACGA":827106, "GACGT":593227, "GACGC":692277, "GACGG":903707, "GAGAA":3808842, "GAGAT":2184512, "GAGAC":2289973, "GAGAG":3060372, "GAGTA":1088817, "GAGTT":2107796, "GAGTC":1636028, "GAGTG":1950589, "GAGCA":2275458, "GAGCT":2347068, "GAGCC":2594044, "GAGCG":1196277, "GAGGA":4631621, "GAGGT":2348562, "GAGGC":3680435, "GAGGG":2280708, "GTAAA":1340262, "GTAAT":1072415, "GTAAC":768564, "GTAAG":802432, "GTATA":765771, "GTATT":1244983, "GTATC":714592, "GTATG":984428, "GTACA":1072529, "GTACT":930692, "GTACC":893440, "GTACG":358196, "GTAGA":1174098, "GTAGT":1643780, "GTAGC":940071, "GTAGG":756098, "GTTAA":1025407, "GTTAT":909739, "GTTAC":849402, "GTTAG":728838, "GTTTA":1266026, "GTTTT":2428012, "GTTTC":1678474, "GTTTG":1912202, "GTTCA":1562893, "GTTCT":2175483, "GTTCC":1555283, "GTTCG":821891, "GTTGA":1516122, "GTTGT":1253963, "GTTGC":1303172, "GTTGG":1716022, "GTCAA":1245660, "GTCAT":1326896, "GTCAC":1397915, "GTCAG":1572056, "GTCTA":738741, "GTCTT":1597779, "GTCTC":1736917, "GTCTG":1796247, "GTCCA":1655822, "GTCCT":1717481, "GTCCC":2292336, "GTCCG":1004828, "GTCGA":391162, "GTCGT":642986, "GTCGC":583513, "GTCGG":845398, "GTGAA":2478808, "GTGAT":1798904, "GTGAC":1718542, "GTGAG":1986435, "GTGTA":1047016, "GTGTT":1718556, "GTGTC":2017583, "GTGTG":2524877, "GTGCA":1572794, "GTGCT":1918025, "GTGCC":2231437, "GTGCG":1340614, "GTGGA":2815218, "GTGGT":2150467, "GTGGC":2720638, "GTGGG":2865376, "GCAAA":1920451, "GCAAT":1067286, "GCAAC":1278657, "GCAAG":2003042, "GCATA":705360, "GCATT":1365090, "GCATC":1620786, "GCATG":1526723, "GCACA":1546268, "GCACT":1650874, "GCACC":1593352, "GCACG":670622, "GCAGA":2699133, "GCAGT":1957353, "GCAGC":2535235, "GCAGG":2635513, "GCTAA":1015439, "GCTAT":1314251, "GCTAC":1603233, "GCTAG":882786, "GCTTA":824846, "GCTTT":1888437, "GCTTC":1938702, "GCTTG":2148822, "GCTCA":2014108, "GCTCT":1923091, "GCTCC":2096191, "GCTCG":771042, "GCTGA":3367207, "GCTGT":2597913, "GCTGC":2820424, "GCTGG":4149811, "GCCAA":2129857, "GCCAT":1919955, "GCCAC":2149108, "GCCAG":2846773, "GCCTA":1039603, "GCCTT":1898542, "GCCTC":2683308, "GCCTG":3455958, "GCCCA":2664052, "GCCCT":2314231, "GCCCC":2546415, "GCCCG":1556980, "GCCGA":1371441, "GCCGT":737662, "GCCGC":1802588, "GCCGG":1608291, "GCGAA":557586, "GCGAT":445343, "GCGAC":622961, "GCGAG":926684, "GCGTA":215383, "GCGTT":425616, "GCGTC":746531, "GCGTG":1456969, "GCGCA":734793, "GCGCT":1192241, "GCGCC":1375882, "GCGCG":1318728, "GCGGA":859619, "GCGGT":916796, "GCGGC":1649819, "GCGGG":1883988, "GGAAA":3260163, "GGAAT":1792575, "GGAAC":1736182, "GGAAG":3751204, "GGATA":1003641, "GGATT":1739247, "GGATC":2042792, "GGATG":2118964, "GGACA":2059618, "GGACT":1702988, "GGACC":1922370, "GGACG":916938, "GGAGA":3679864, "GGAGT":2487697, "GGAGC":2817831, "GGAGG":5276189, "GGTAA":898280, "GGTAT":834959, "GGTAC":699745, "GGTAG":860344, "GGTTA":777676, "GGTTT":1654960, "GGTTC":1433107, "GGTTG":1573315, "GGTCA":1502262, "GGTCT":1543895, "GGTCC":1341883, "GGTCG":717670, "GGTGA":2375950, "GGTGT":2284128, "GGTGC":1775691, "GGTGG":3737974, "GGCAA":1845118, "GGCAT":1853929, "GGCAC":1534640, "GGCAG":2758866, "GGCTA":1152574, "GGCTT":1760427, "GGCTC":2161147, "GGCTG":4990162, "GGCCA":2629305, "GGCCT":2246491, "GGCCC":2696126, "GGCCG":1794356, "GGCGA":875544, "GGCGT":946548, "GGCGC":1532267, "GGCGG":2210076, "GGGAA":2614215, "GGGAT":1613256, "GGGAC":1842972, "GGGAG":4015479, "GGGTA":785705, "GGGTT":1640922, "GGGTC":1372294, "GGGTG":2570201, "GGGCA":2080900, "GGGCT":2485183, "GGGCC":2556751, "GGGCG":1503573, "GGGGA":2665404, "GGGGT":1652141, "GGGGC":2359350, "GGGGG":10594424 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46085_1_TK_RNA_9_D21_PL_D1_A76_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46085_1_TK_RNA_9_D21_PL_D1_A76_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46085_1_TK_RNA_9_D21_PL_D1_A76_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46085_1_TK_RNA_9_D21_PL_D1_A76_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46085_1_TK_RNA_9_D21_PL_D1_A76.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46085_1_TK_RNA_9_D21_PL_D1_A76.fastp.json " }