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"CTGCG":437332, "CTGGA":1737584, "CTGGT":1478246, "CTGGC":1363309, "CTGGG":2175233, "CCAAA":1251092, "CCAAT":759915, "CCAAC":753579, "CCAAG":1066418, "CCATA":789481, "CCATT":1002180, "CCATC":1133761, "CCATG":1085289, "CCACA":1472907, "CCACT":1393849, "CCACC":1485243, "CCACG":607524, "CCAGA":1272464, "CCAGT":1111176, "CCAGC":1731284, "CCAGG":2180410, "CCTAA":449740, "CCTAT":434821, "CCTAC":538373, "CCTAG":468915, "CCTTA":790154, "CCTTT":1273998, "CCTTC":1541992, "CCTTG":1320336, "CCTCA":1473298, "CCTCT":1547272, "CCTCC":2163399, "CCTCG":627632, "CCTGA":1086814, "CCTGT":1184984, "CCTGC":1445537, "CCTGG":2124283, "CCCAA":1057882, "CCCAT":947227, "CCCAC":1406241, "CCCAG":1971536, "CCCTA":498780, "CCCTT":1030487, "CCCTC":1319872, "CCCTG":1233539, "CCCCA":1407141, "CCCCT":1119723, "CCCCC":1229335, "CCCCG":909016, "CCCGA":482128, "CCCGT":400301, "CCCGC":822400, "CCCGG":907710, "CCGAA":412744, "CCGAT":240201, "CCGAC":473164, "CCGAG":514009, "CCGTA":186518, "CCGTT":412527, "CCGTC":432042, 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"CGGTT":395759, "CGGTC":383027, "CGGTG":466930, "CGGCA":440755, "CGGCT":468531, "CGGCC":744513, "CGGCG":577169, "CGGGA":828768, "CGGGT":390683, "CGGGC":696913, "CGGGG":937700, "GAAAA":1364706, "GAAAT":923436, "GAAAC":781209, "GAAAG":1032314, "GAATA":599723, "GAATT":768277, "GAATC":641201, "GAATG":794268, "GAACA":791958, "GAACT":861809, "GAACC":629693, "GAACG":249793, "GAAGA":1343560, "GAAGT":911885, "GAAGC":983253, "GAAGG":1290923, "GATAA":554914, "GATAT":437703, "GATAC":349676, "GATAG":461665, "GATTA":538288, "GATTT":891603, "GATTC":663671, "GATTG":427465, "GATCA":935528, "GATCT":832168, "GATCC":834518, "GATCG":254308, "GATGA":960609, "GATGT":852818, "GATGC":820523, "GATGG":1152464, "GACAA":655415, "GACAT":607005, "GACAC":681491, "GACAG":1008893, "GACTA":405716, "GACTT":696597, "GACTC":587770, "GACTG":728210, "GACCA":716434, "GACCT":902299, "GACCC":556767, "GACCG":333560, "GACGA":298867, "GACGT":228179, "GACGC":284363, "GACGG":443982, "GAGAA":1213170, "GAGAT":833603, "GAGAC":805196, "GAGAG":1259486, "GAGTA":558065, "GAGTT":826109, "GAGTC":733825, "GAGTG":933802, "GAGCA":848690, "GAGCT":956348, "GAGCC":945702, "GAGCG":435684, "GAGGA":1302044, "GAGGT":1249950, "GAGGC":1377565, "GAGGG":1397738, "GTAAA":669898, "GTAAT":614114, "GTAAC":421296, "GTAAG":486881, "GTATA":381489, "GTATT":625715, "GTATC":381325, "GTATG":422982, "GTACA":619262, "GTACT":549390, "GTACC":359244, "GTACG":147416, "GTAGA":665514, "GTAGT":650776, "GTAGC":611236, "GTAGG":733692, "GTTAA":513373, "GTTAT":475441, "GTTAC":372058, "GTTAG":401747, "GTTTA":608906, "GTTTT":1369589, "GTTTC":1175679, "GTTTG":856897, "GTTCA":1101530, "GTTCT":1242075, "GTTCC":849953, "GTTCG":213857, "GTTGA":744013, "GTTGT":779055, "GTTGC":709629, "GTTGG":930455, "GTCAA":660745, "GTCAT":806313, "GTCAC":991702, "GTCAG":1007196, "GTCTA":383177, "GTCTT":1136053, "GTCTC":1126726, "GTCTG":1084091, "GTCCA":1033801, "GTCCT":1034410, "GTCCC":1117927, "GTCCG":298226, "GTCGA":209660, "GTCGT":279313, "GTCGC":255001, "GTCGG":388918, "GTGAA":845425, "GTGAT":788650, "GTGAC":639020, "GTGAG":958276, "GTGTA":548780, "GTGTT":734210, "GTGTC":707881, "GTGTG":953010, "GTGCA":922532, "GTGCT":869536, "GTGCC":765140, "GTGCG":303840, "GTGGA":931500, "GTGGT":1348053, "GTGGC":1351497, "GTGGG":1240834, "GCAAA":861063, "GCAAT":630266, "GCAAC":788238, "GCAAG":696885, "GCATA":463150, "GCATT":720295, "GCATC":813209, "GCATG":773082, "GCACA":945862, "GCACT":821558, "GCACC":769849, "GCACG":589406, "GCAGA":1111969, "GCAGT":1083702, "GCAGC":1320530, "GCAGG":1596618, "GCTAA":470404, "GCTAT":661256, "GCTAC":472538, "GCTAG":384259, "GCTTA":433047, "GCTTT":1067563, "GCTTC":1226627, "GCTTG":1077454, "GCTCA":1149067, "GCTCT":1072785, "GCTCC":1511551, "GCTCG":370057, "GCTGA":1106679, "GCTGT":1084108, "GCTGC":1250836, "GCTGG":1990484, "GCCAA":861344, "GCCAT":894542, "GCCAC":1173940, "GCCAG":1476931, "GCCTA":374162, "GCCTT":1050856, "GCCTC":1415998, "GCCTG":1373338, "GCCCA":1204908, "GCCCT":924385, "GCCCC":1028462, "GCCCG":549722, "GCCGA":485683, "GCCGT":341084, "GCCGC":525134, "GCCGG":865357, "GCGAA":183871, "GCGAT":474428, "GCGAC":221898, "GCGAG":393175, "GCGTA":155207, "GCGTT":268495, "GCGTC":295489, "GCGTG":361330, "GCGCA":343160, "GCGCT":339810, "GCGCC":479321, "GCGCG":639487, "GCGGA":437697, "GCGGT":363121, "GCGGC":657349, "GCGGG":782016, "GGAAA":1180741, "GGAAT":801089, "GGAAC":693693, "GGAAG":1553684, "GGATA":504078, "GGATT":730854, "GGATC":682078, "GGATG":1080995, "GGACA":902920, "GGACT":717588, "GGACC":652267, "GGACG":383398, "GGAGA":1380342, "GGAGT":1254957, "GGAGC":994021, "GGAGG":2183577, "GGTAA":557007, "GGTAT":474921, "GGTAC":509248, "GGTAG":721257, "GGTTA":445750, "GGTTT":970627, "GGTTC":984811, "GGTTG":827974, "GGTCA":1126807, "GGTCT":1052563, "GGTCC":1141929, "GGTCG":353141, "GGTGA":1072176, "GGTGT":884753, "GGTGC":820151, "GGTGG":1928897, "GGCAA":1112647, "GGCAT":989026, "GGCAC":933136, "GGCAG":1762273, "GGCTA":687381, "GGCTT":1044710, "GGCTC":1137027, "GGCTG":1978421, "GGCCA":1336626, "GGCCT":1202138, "GGCCC":1102138, "GGCCG":829408, "GGCGA":416077, "GGCGT":409980, "GGCGC":811160, "GGCGG":975726, "GGGAA":1215716, "GGGAT":854891, "GGGAC":837916, "GGGAG":2012530, "GGGTA":593598, "GGGTT":872287, "GGGTC":935213, "GGGTG":1255821, "GGGCA":1354485, "GGGCT":1207391, "GGGCC":1356792, "GGGCG":720291, "GGGGA":1412206, "GGGGT":1228885, "GGGGC":1357461, "GGGGG":1618394 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 15656936, "total_bases": 923759224, "q20_bases": 902170488, "q30_bases": 876014052, "total_cycles": 59, "quality_curves": { 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"mean":[33.383,33.2952,33.0863,33.1383,33.217,33.1977,33.2416,33.2602,33.3053,33.2425,33.2708,33.2698,33.2856,33.2858,33.2816,33.2787,33.2548,33.2642,33.2694,33.2625,33.2552,33.2554,33.2462,33.2456,33.2466,33.3081,33.3139,33.309,33.3069,33.2973,33.2977,33.2991,33.2865,33.291,33.2893,33.2831,33.2852,33.2782,33.2778,33.2782,33.2746,33.272,33.2662,33.2598,33.2631,33.2612,33.2566,33.2559,33.2552,33.2502,33.2505,33.2503,33.2441,33.2409,33.2316,33.2285,33.2242,33.2252,33.0495] }, "content_curves": { 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"GC":[0.770022,0.554208,0.579978,0.571058,0.506944,0.473069,0.385055,0.455252,0.442016,0.418624,0.50916,0.487311,0.474979,0.474197,0.479651,0.486905,0.480289,0.484062,0.489067,0.484656,0.485596,0.489681,0.482978,0.484166,0.491221,0.486363,0.492804,0.495537,0.497691,0.498175,0.502683,0.496378,0.499709,0.502776,0.496802,0.497456,0.500984,0.50121,0.499652,0.504896,0.499008,0.495822,0.504959,0.498506,0.499233,0.503967,0.496353,0.497961,0.502727,0.497834,0.504558,0.508492,0.504233,0.506139,0.51273,0.508321,0.507158,0.506777,0.502441] }, "kmer_count": { "AAAAA":3245332, "AAAAT":1733634, "AAAAC":1168963, "AAAAG":1331525, "AAATA":1315336, "AAATT":1210174, "AAATC":884279, "AAATG":1173309, "AAACA":1322952, "AAACT":1005971, "AAACC":755229, "AAACG":242092, "AAAGA":1267900, "AAAGT":1030395, "AAAGC":885932, "AAAGG":1105572, "AATAA":1070046, "AATAT":819026, "AATAC":657164, "AATAG":572772, "AATTA":789498, "AATTT":1268324, "AATTC":863629, "AATTG":587936, "AATCA":849080, "AATCT":884945, "AATCC":814235, 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"AGTAG":799750, "AGTTA":538384, "AGTTT":1161790, "AGTTC":862658, "AGTTG":733837, "AGTCA":908060, "AGTCT":927767, "AGTCC":773513, "AGTCG":209627, "AGTGA":941336, "AGTGT":693540, "AGTGC":895702, "AGTGG":1150718, "AGCAA":891432, "AGCAT":772248, "AGCAC":1040649, "AGCAG":1384720, "AGCTA":583037, "AGCTT":1147997, "AGCTC":1027606, "AGCTG":1401697, "AGCCA":1260238, "AGCCT":1140604, "AGCCC":918241, "AGCCG":451587, "AGCGA":309649, "AGCGT":235227, "AGCGC":369533, "AGCGG":400230, "AGGAA":1394574, "AGGAT":937845, "AGGAC":776467, "AGGAG":1595825, "AGGTA":687882, "AGGTT":928146, "AGGTC":1041607, "AGGTG":1210932, "AGGCA":1595331, "AGGCT":1430224, "AGGCC":1036948, "AGGCG":789087, "AGGGA":1233719, "AGGGT":942865, "AGGGC":1159055, "AGGGG":1297906, "TAAAA":1459727, "TAAAT":879761, "TAAAC":582005, "TAAAG":728197, "TAATA":603107, "TAATT":827570, "TAATC":618222, "TAATG":559791, "TAACA":630455, "TAACT":541075, "TAACC":363431, "TAACG":134998, "TAAGA":664290, "TAAGT":524393, "TAAGC":404418, "TAAGG":517254, 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"TTAGC":525678, "TTAGG":804275, "TTTAA":1236524, "TTTAT":1189269, "TTTAC":673313, "TTTAG":714457, "TTTTA":1425562, "TTTTT":3738891, "TTTTC":1825549, "TTTTG":1533277, "TTTCA":1499042, "TTTCT":2111607, "TTTCC":1617346, "TTTCG":309923, "TTTGA":1114860, "TTTGT":1263357, "TTTGC":947913, "TTTGG":1239525, "TTCAA":1208653, "TTCAT":1336138, "TTCAC":1485302, "TTCAG":1360670, "TTCTA":792001, "TTCTT":2339162, "TTCTC":1813027, "TTCTG":1664507, "TTCCA":1543047, "TTCCT":1743102, "TTCCC":1189220, "TTCCG":528013, "TTCGA":305465, "TTCGT":247074, "TTCGC":236371, "TTCGG":330775, "TTGAA":1029304, "TTGAT":1033968, "TTGAC":745862, "TTGAG":1021094, "TTGTA":792143, "TTGTT":1276299, "TTGTC":873405, "TTGTG":806655, "TTGCA":834947, "TTGCT":1066989, "TTGCC":892128, "TTGCG":242759, "TTGGA":995544, "TTGGT":1017606, "TTGGC":1070664, "TTGGG":1115140, "TCAAA":1292363, "TCAAT":841515, "TCAAC":645160, "TCAAG":868249, "TCATA":736735, "TCATT":1145345, "TCATC":1322382, "TCATG":959787, "TCACA":1360958, "TCACT":1184820, "TCACC":1344467, "TCACG":384993, "TCAGA":1087963, "TCAGT":970119, "TCAGC":1476635, "TCAGG":1455716, "TCTAA":602629, "TCTAT":559422, "TCTAC":579465, "TCTAG":579244, "TCTTA":681450, "TCTTT":1803580, "TCTTC":2159270, "TCTTG":1494448, "TCTCA":1348063, "TCTCT":1741954, "TCTCC":1782847, "TCTCG":552775, "TCTGA":1200975, "TCTGT":1355222, "TCTGC":1331412, "TCTGG":1514372, "TCCAA":1121896, "TCCAT":1202846, "TCCAC":1314305, "TCCAG":1751797, "TCCTA":629563, "TCCTT":1899122, "TCCTC":1834407, "TCCTG":1687169, "TCCCA":1707791, "TCCCT":1182041, "TCCCC":1385246, "TCCCG":711166, "TCCGA":442046, "TCCGT":472704, "TCCGC":367808, "TCCGG":486575, "TCGAA":326733, "TCGAT":289730, "TCGAC":163164, "TCGAG":256760, "TCGTA":229223, "TCGTT":330467, "TCGTC":357716, "TCGTG":298442, "TCGCA":190357, "TCGCT":415797, "TCGCC":326631, "TCGCG":179464, "TCGGA":310203, "TCGGT":304397, "TCGGC":476654, "TCGGG":509923, "TGAAA":1154104, "TGAAT":846819, "TGAAC":771065, "TGAAG":1224339, "TGATA":587828, "TGATT":808834, "TGATC":947364, "TGATG":1272616, "TGACA":840157, "TGACT":804448, "TGACC":786666, "TGACG":288059, "TGAGA":1123919, "TGAGT":786143, "TGAGC":942467, "TGAGG":1346825, "TGTAA":827365, "TGTAT":660422, "TGTAC":536313, "TGTAG":837663, "TGTTA":615367, "TGTTT":1352478, "TGTTC":963570, "TGTTG":1197004, "TGTCA":984846, "TGTCT":1150584, "TGTCC":961541, "TGTCG":279880, "TGTGA":872733, "TGTGT":1018697, "TGTGC":781740, "TGTGG":1177736, "TGCAA":793877, "TGCAT":779788, "TGCAC":730318, "TGCAG":1493684, "TGCTA":512902, "TGCTT":1171013, "TGCTC":1132779, "TGCTG":1493104, "TGCCA":1206447, "TGCCT":1231872, "TGCCC":1028667, "TGCCG":490445, "TGCGA":190625, "TGCGT":239744, "TGCGC":280502, "TGCGG":443949, "TGGAA":1254097, "TGGAT":871617, "TGGAC":719637, "TGGAG":1632909, "TGGTA":740883, "TGGTT":1005726, "TGGTC":1250045, "TGGTG":1719886, "TGGCA":1272233, "TGGCT":1631106, "TGGCC":1240964, "TGGCG":484991, "TGGGA":1385360, "TGGGT":1035469, "TGGGC":1346054, "TGGGG":1590342, "CAAAA":1518080, "CAAAT":1120476, "CAAAC":851107, "CAAAG":1274692, "CAATA":646107, "CAATT":754051, "CAATC":637456, "CAATG":881698, "CAACA":968760, "CAACT":711810, "CAACC":845420, "CAACG":200226, "CAAGA":879074, "CAAGT":798024, "CAAGC":698800, "CAAGG":911982, "CATAA":668485, "CATAT":799933, "CATAC":493313, "CATAG":620508, "CATTA":609639, "CATTT":1399132, "CATTC":954519, "CATTG":781896, "CATCA":1270797, "CATCT":1410511, "CATCC":1044285, "CATCG":290961, "CATGA":869549, "CATGT":908262, "CATGC":743530, "CATGG":1094543, "CACAA":956515, "CACAT":1042212, "CACAC":1260006, "CACAG":1742907, "CACTA":696025, "CACTT":1101392, "CACTC":952617, "CACTG":1392119, "CACCA":1643857, "CACCT":1278852, "CACCC":1082127, "CACCG":434428, "CACGA":366386, "CACGT":424876, "CACGC":470424, "CACGG":685959, "CAGAA":1365489, "CAGAT":925751, "CAGAC":835383, "CAGAG":1437922, "CAGTA":671418, "CAGTT":1009773, "CAGTC":859608, "CAGTG":1445649, "CAGCA":1783668, "CAGCT":1675388, "CAGCC":1540282, "CAGCG":445953, "CAGGA":1695731, "CAGGT":1359333, "CAGGC":1884576, "CAGGG":1712739, "CTAAA":684926, "CTAAT":498005, "CTAAC":336798, "CTAAG":491827, "CTATA":394586, "CTATT":783507, "CTATC":396932, "CTATG":501325, "CTACA":699178, "CTACT":880680, "CTACC":479920, "CTACG":223768, "CTAGA":506793, "CTAGT":361848, "CTAGC":391756, "CTAGG":544949, "CTTAA":662814, "CTTAT":540202, "CTTAC":413049, "CTTAG":800059, "CTTTA":892346, "CTTTT":1694430, "CTTTC":1403056, "CTTTG":1307056, "CTTCA":1741418, "CTTCT":2203046, "CTTCC":1688024, "CTTCG":394158, "CTTGA":1298366, "CTTGT":1119897, "CTTGC":920338, "CTTGG":1471564, "CTCAA":1022648, "CTCAT":1126544, "CTCAC":1043882, "CTCAG":1649333, "CTCTA":712764, "CTCTT":1499854, "CTCTC":1472085, "CTCTG":1600660, "CTCCA":1844385, "CTCCT":2366419, "CTCCC":1741339, "CTCCG":709567, "CTCGA":372914, "CTCGT":482920, "CTCGC":431643, "CTCGG":634869, "CTGAA":1202127, "CTGAT":1044463, "CTGAC":773174, "CTGAG":1407743, "CTGTA":918547, "CTGTT":1161734, "CTGTC":1082218, "CTGTG":1313198, "CTGCA":1386228, "CTGCT":1673069, "CTGCC":1423770, "CTGCG":433470, "CTGGA":1723709, "CTGGT":1466190, "CTGGC":1351892, "CTGGG":2158278, "CCAAA":1237620, "CCAAT":752950, "CCAAC":745728, "CCAAG":1057310, "CCATA":782325, "CCATT":994551, "CCATC":1124559, "CCATG":1076943, "CCACA":1458902, "CCACT":1382816, "CCACC":1470401, "CCACG":600854, "CCAGA":1257507, "CCAGT":1102321, "CCAGC":1717211, "CCAGG":2162640, "CCTAA":445209, "CCTAT":431287, "CCTAC":533531, "CCTAG":464490, "CCTTA":783778, "CCTTT":1265111, "CCTTC":1529459, "CCTTG":1310761, "CCTCA":1461773, "CCTCT":1534609, "CCTCC":2140857, "CCTCG":621789, "CCTGA":1078390, "CCTGT":1176116, "CCTGC":1434281, "CCTGG":2106910, "CCCAA":1048187, "CCCAT":939698, "CCCAC":1392680, "CCCAG":1954124, "CCCTA":494351, "CCCTT":1022168, "CCCTC":1303908, "CCCTG":1223226, "CCCCA":1393274, "CCCCT":1110650, "CCCCC":1193044, "CCCCG":891698, "CCCGA":472272, "CCCGT":392271, "CCCGC":810954, "CCCGG":896339, "CCGAA":408984, "CCGAT":238368, "CCGAC":467599, "CCGAG":504184, "CCGTA":184839, "CCGTT":409349, "CCGTC":421272, 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"CGGTT":392791, "CGGTC":379092, "CGGTG":462425, "CGGCA":436622, "CGGCT":460576, "CGGCC":731679, "CGGCG":563744, "CGGGA":820298, "CGGGT":386936, "CGGGC":685052, "CGGGG":918984, "GAAAA":1350244, "GAAAT":915158, "GAAAC":773844, "GAAAG":1023210, "GAATA":593618, "GAATT":762034, "GAATC":635678, "GAATG":787982, "GAACA":783930, "GAACT":853203, "GAACC":623336, "GAACG":246909, "GAAGA":1315132, "GAAGT":904696, "GAAGC":975065, "GAAGG":1278846, "GATAA":549589, "GATAT":434262, "GATAC":346630, "GATAG":457558, "GATTA":533444, "GATTT":884905, "GATTC":658538, "GATTG":423992, "GATCA":927547, "GATCT":825752, "GATCC":828248, "GATCG":225641, "GATGA":952545, "GATGT":846359, "GATGC":814171, "GATGG":1143258, "GACAA":648884, "GACAT":601696, "GACAC":674984, "GACAG":998996, "GACTA":401935, "GACTT":691267, "GACTC":582779, "GACTG":722586, "GACCA":709688, "GACCT":895352, "GACCC":551063, "GACCG":329887, "GACGA":294958, "GACGT":226037, "GACGC":281094, "GACGG":437900, "GAGAA":1202701, "GAGAT":813052, "GAGAC":798046, 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"mean":[33.4393,33.3832,33.18,33.232,33.3148,33.2969,33.3417,33.3632,33.4088,33.3456,33.3749,33.3747,33.3902,33.3906,33.3868,33.3835,33.3611,33.3701,33.3755,33.3691,33.3618,33.3612,33.3534,33.3529,33.354,33.4164,33.4227,33.4182,33.4151,33.4058,33.406,33.4073,33.3954,33.3999,33.397,33.3922,33.3933,33.3877,33.3866,33.3872,33.3828,33.3809,33.3748,33.3691,33.3715,33.3685,33.364,33.3637,33.3628,33.3572,33.3579,33.3591,33.353,33.349,33.3399,33.3367,33.3319,33.3338,33.1574] }, "content_curves": { 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"TAAGG":557653, "TATAA":479465, "TATAT":475495, "TATAC":328224, "TATAG":361314, "TATTA":490614, "TATTT":1035357, "TATTC":538727, "TATTG":529317, "TATCA":524786, "TATCT":512415, "TATCC":428557, "TATCG":117663, "TATGA":649524, "TATGT":557075, "TATGC":579429, "TATGG":633411, "TACAA":741356, "TACAT":529615, "TACAC":444474, "TACAG":837581, "TACTA":461884, "TACTT":585212, "TACTC":673386, "TACTG":617707, "TACCA":651448, "TACCT":622106, "TACCC":473732, "TACCG":191610, "TACGA":228858, "TACGT":159326, "TACGC":164555, "TACGG":164760, "TAGAA":712815, "TAGAT":413208, "TAGAC":330390, "TAGAG":701972, "TAGTA":359723, "TAGTT":430070, "TAGTC":482843, "TAGTG":688400, "TAGCA":488532, "TAGCT":584035, "TAGCC":458926, "TAGCG":127866, "TAGGA":547370, "TAGGT":327454, "TAGGC":406785, "TAGGG":403135, "TTAAA":998718, "TTAAT":626724, "TTAAC":409846, "TTAAG":596178, "TTATA":479673, "TTATT":878991, "TTATC":474930, "TTATG":561730, "TTACA":724134, "TTACT":576492, "TTACC":473863, "TTACG":129375, "TTAGA":533613, 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"TCACC":1098278, "TCACG":290054, "TCAGA":1138173, "TCAGT":871110, "TCAGC":1088636, "TCAGG":1115532, "TCTAA":508960, "TCTAT":484483, "TCTAC":630897, "TCTAG":467034, "TCTTA":554744, "TCTTT":1147069, "TCTTC":1219381, "TCTTG":936382, "TCTCA":1067220, "TCTCT":1280488, "TCTCC":1246812, "TCTCG":396061, "TCTGA":1075068, "TCTGT":1171106, "TCTGC":1080253, "TCTGG":1586472, "TCCAA":859274, "TCCAT":813169, "TCCAC":887816, "TCCAG":1577763, "TCCTA":643074, "TCCTT":1014945, "TCCTC":1237821, "TCCTG":1798055, "TCCCA":1534611, "TCCCT":1218310, "TCCCC":1195341, "TCCCG":623999, "TCCGA":320439, "TCCGT":296788, "TCCGC":610406, "TCCGG":478544, "TCGAA":316097, "TCGAT":197129, "TCGAC":214559, "TCGAG":389674, "TCGTA":144061, "TCGTT":190211, "TCGTC":291056, "TCGTG":434345, "TCGCA":218104, "TCGCT":673633, "TCGCC":474998, "TCGCG":164564, "TCGGA":364845, "TCGGT":288481, "TCGGC":593670, "TCGGG":841399, "TGAAA":1437322, "TGAAT":863724, "TGAAC":1041638, "TGAAG":1788204, "TGATA":524960, "TGATT":854751, "TGATC":917153, 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"CTAAA":662251, "CTAAT":476068, "CTAAC":386294, "CTAAG":699297, "CTATA":374559, "CTATT":521658, "CTATC":399207, "CTATG":767417, "CTACA":778422, "CTACT":931730, "CTACC":622240, "CTACG":267387, "CTAGA":555336, "CTAGT":357885, "CTAGC":363967, "CTAGG":532741, "CTTAA":544864, "CTTAT":463288, "CTTAC":439988, "CTTAG":459126, "CTTTA":632780, "CTTTT":1200064, "CTTTC":936752, "CTTTG":1257746, "CTTCA":1187582, "CTTCT":1288103, "CTTCC":1411217, "CTTCG":498624, "CTTGA":1179156, "CTTGT":703151, "CTTGC":712409, "CTTGG":1136269, "CTCAA":962375, "CTCAT":857432, "CTCAC":1000052, "CTCAG":1465413, "CTCTA":620765, "CTCTT":1052816, "CTCTC":1086143, "CTCTG":1527233, "CTCCA":1388511, "CTCCT":1592825, "CTCCC":1660405, "CTCCG":594099, "CTCGA":289733, "CTCGT":284474, "CTCGC":400189, "CTCGG":801243, "CTGAA":1417874, "CTGAT":946313, "CTGAC":945774, "CTGAG":1850259, "CTGTA":1126199, "CTGTT":940342, "CTGTC":1049765, "CTGTG":1556749, "CTGCA":1378989, "CTGCT":1425528, "CTGCC":1631318, "CTGCG":538027, "CTGGA":2026932, "CTGGT":1158270, "CTGGC":1578017, "CTGGG":2269491, "CCAAA":1207052, "CCAAT":524607, "CCAAC":856829, "CCAAG":1448022, "CCATA":424603, "CCATT":838634, "CCATC":1134817, "CCATG":1221561, "CCACA":1126690, "CCACT":992251, "CCACC":1568239, "CCACG":507180, "CCAGA":1505759, "CCAGT":1003226, "CCAGC":1956295, "CCAGG":2223918, "CCTAA":596884, "CCTAT":473058, "CCTAC":631500, "CCTAG":536067, "CCTTA":492332, "CCTTT":992873, "CCTTC":1252383, "CCTTG":955833, "CCTCA":1362399, "CCTCT":1229581, "CCTCC":1956752, "CCTCG":552740, "CCTGA":1471236, "CCTGT":1417631, "CCTGC":1553669, "CCTGG":2190883, "CCCAA":1086382, "CCCAT":903856, "CCCAC":1110373, "CCCAG":2364280, "CCCTA":549253, "CCCTT":979132, "CCCTC":1311132, "CCCTG":1665816, "CCCCA":1494536, "CCCCT":1199727, "CCCCC":1319112, "CCCCG":828090, "CCCGA":539564, "CCCGT":416203, "CCCGC":729963, "CCCGG":886354, "CCGAA":406375, "CCGAT":419673, "CCGAC":353637, "CCGAG":685473, "CCGTA":163156, "CCGTT":219189, "CCGTC":411471, "CCGTG":565401, "CCGCA":578464, "CCGCT":452924, "CCGCC":1010838, "CCGCG":498581, "CCGGA":495327, "CCGGT":325935, "CCGGC":851429, "CCGGG":867556, "CGAAA":379475, "CGAAT":218644, "CGAAC":243199, "CGAAG":448918, "CGATA":158108, "CGATT":202078, "CGATC":393203, "CGATG":316779, "CGACA":314792, "CGACT":228661, "CGACC":364735, "CGACG":243150, "CGAGA":590221, "CGAGT":365095, "CGAGC":439093, "CGAGG":690953, "CGTAA":126655, "CGTAT":122463, "CGTAC":134184, "CGTAG":160890, "CGTTA":115622, "CGTTT":257379, "CGTTC":235065, "CGTTG":235112, "CGTCA":295529, "CGTCT":359666, "CGTCC":435490, "CGTCG":200905, "CGTGA":436604, "CGTGT":413310, "CGTGC":578726, "CGTGG":696467, "CGCAA":285747, "CGCAT":213511, "CGCAC":432721, "CGCAG":446281, "CGCTA":372111, "CGCTT":600876, "CGCTC":455999, "CGCTG":499964, "CGCCA":575181, "CGCCT":628284, "CGCCC":718964, "CGCCG":616815, "CGCGA":204883, "CGCGT":300996, "CGCGC":424455, "CGCGG":443505, "CGGAA":480736, "CGGAT":246985, "CGGAC":318566, "CGGAG":665484, "CGGTA":133488, "CGGTT":214884, "CGGTC":369508, "CGGTG":554748, "CGGCA":500700, "CGGCT":587986, "CGGCC":824969, "CGGCG":591809, "CGGGA":859992, "CGGGT":579541, "CGGGC":656281, "CGGGG":865140, "GAAAA":1797533, "GAAAT":1157018, "GAAAC":1139195, "GAAAG":1477001, "GAATA":577158, "GAATT":843913, "GAATC":675612, "GAATG":1003129, "GAACA":1025932, "GAACT":931484, "GAACC":924700, "GAACG":422479, "GAAGA":2258127, "GAAGT":1091035, "GAAGC":1395085, "GAAGG":1726417, "GATAA":556307, "GATAT":468881, "GATAC":361789, "GATAG":398577, "GATTA":586900, "GATTT":851518, "GATTC":694125, "GATTG":697638, "GATCA":845437, "GATCT":832091, "GATCC":770973, "GATCG":812618, "GATGA":1346690, "GATGT":805727, "GATGC":814885, "GATGG":1213837, "GACAA":876124, "GACAT":784126, "GACAC":673648, "GACAG":1128260, "GACTA":451984, "GACTT":780204, "GACTC":727311, "GACTG":881437, "GACCA":1119554, "GACCT":1002493, "GACCC":918154, "GACCG":414414, "GACGA":407059, "GACGT":292183, "GACGC":331482, "GACGG":434482, "GAGAA":1862032, "GAGAT":1102039, "GAGAC":1165457, "GAGAG":1451559, "GAGTA":552101, "GAGTT":1028800, "GAGTC":822671, "GAGTG":1026735, "GAGCA":1179397, "GAGCT":1185295, "GAGCC":1357668, "GAGCG":586854, "GAGGA":2324804, "GAGGT":1238356, "GAGGC":1877284, "GAGGG":1201343, "GTAAA":603064, "GTAAT":508601, "GTAAC":355863, "GTAAG":382606, "GTATA":349807, "GTATT":538880, "GTATC":333030, "GTATG":460237, "GTACA":507057, "GTACT":426842, "GTACC":438144, "GTACG":178306, "GTAGA":572271, "GTAGT":770267, "GTAGC":497473, "GTAGG":387647, "GTTAA":449369, "GTTAT":398132, "GTTAC":388482, "GTTAG":342963, "GTTTA":550526, "GTTTT":1105174, "GTTTC":803002, "GTTTG":919902, "GTTCA":773494, "GTTCT":1016005, "GTTCC":751995, "GTTCG":398232, "GTTGA":706763, "GTTGT":587573, "GTTGC":693752, "GTTGG":840148, "GTCAA":656019, "GTCAT":621926, "GTCAC":703477, "GTCAG":817566, "GTCTA":343480, "GTCTT":774890, "GTCTC":919884, "GTCTG":890342, "GTCCA":830766, "GTCCT":860487, "GTCCC":1079274, "GTCCG":466529, "GTCGA":190558, "GTCGT":262883, "GTCGC":266397, "GTCGG":408202, "GTGAA":1291882, "GTGAT":900255, "GTGAC":874977, "GTGAG":1073897, "GTGTA":483877, "GTGTT":822425, "GTGTC":927462, "GTGTG":1279995, "GTGCA":823017, "GTGCT":985749, "GTGCC":1096778, "GTGCG":599606, "GTGGA":1464371, "GTGGT":1106805, "GTGGC":1396546, "GTGGG":1416267, "GCAAA":918389, "GCAAT":521584, "GCAAC":653541, "GCAAG":985411, "GCATA":330479, "GCATT":631483, "GCATC":799366, "GCATG":794986, "GCACA":788968, "GCACT":850013, "GCACC":819539, "GCACG":354312, "GCAGA":1368357, "GCAGT":1029351, "GCAGC":1299609, "GCAGG":1431131, "GCTAA":491648, "GCTAT":614902, "GCTAC":761442, "GCTAG":433154, "GCTTA":387954, "GCTTT":855776, "GCTTC":951788, "GCTTG":1055870, "GCTCA":1068774, "GCTCT":972730, "GCTCC":1026898, "GCTCG":361589, "GCTGA":1674760, "GCTGT":1276592, "GCTGC":1442365, "GCTGG":2159718, "GCCAA":1109300, "GCCAT":1000113, "GCCAC":1148974, "GCCAG":1496993, "GCCTA":545870, "GCCTT":932954, "GCCTC":1398120, "GCCTG":1803815, "GCCCA":1426742, "GCCCT":1204997, "GCCCC":1275402, "GCCCG":733218, "GCCGA":684274, "GCCGT":374940, "GCCGC":795861, "GCCGG":737218, "GCGAA":284718, "GCGAT":235054, "GCGAC":288649, "GCGAG":462608, "GCGTA":103703, "GCGTT":214214, "GCGTC":350777, "GCGTG":660406, "GCGCA":347813, "GCGCT":579776, "GCGCC":650132, "GCGCG":536639, "GCGGA":435791, "GCGGT":403454, "GCGGC":711190, "GCGGG":823999, "GGAAA":1637842, "GGAAT":896089, "GGAAC":894240, "GGAAG":1885805, "GGATA":478442, "GGATT":874153, "GGATC":992499, "GGATG":1123758, "GGACA":1064075, "GGACT":868278, "GGACC":1024786, "GGACG":461143, "GGAGA":1886107, "GGAGT":1292619, "GGAGC":1450893, "GGAGG":2700110, "GGTAA":438970, "GGTAT":407758, "GGTAC":355931, "GGTAG":448752, "GGTTA":370971, "GGTTT":789184, "GGTTC":693012, "GGTTG":798911, "GGTCA":842668, "GGTCT":796295, "GGTCC":669176, "GGTCG":354783, "GGTGA":1272900, "GGTGT":1102311, "GGTGC":880188, "GGTGG":1881623, "GGCAA":918021, "GGCAT":942586, "GGCAC":795903, "GGCAG":1483190, "GGCTA":573174, "GGCTT":888788, "GGCTC":1118332, "GGCTG":2478753, "GGCCA":1404593, "GGCCT":1173985, "GGCCC":1403813, "GGCCG":827852, "GGCGA":428223, "GGCGT":450119, "GGCGC":706141, "GGCGG":941313, "GGGAA":1341932, "GGGAT":873678, "GGGAC":982348, "GGGAG":1996407, "GGGTA":428870, "GGGTT":764190, "GGGTC":667358, "GGGTG":1318825, "GGGCA":1116282, "GGGCT":1289639, "GGGCC":1261486, "GGGCG":690465, "GGGGA":1330358, "GGGGT":831682, "GGGGC":1174177, "GGGGG":6148969 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46084_1_TK_RNA_8_D21_HSC_T6_A67_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46084_1_TK_RNA_8_D21_HSC_T6_A67_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46084_1_TK_RNA_8_D21_HSC_T6_A67_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46084_1_TK_RNA_8_D21_HSC_T6_A67_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46084_1_TK_RNA_8_D21_HSC_T6_A67.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46084_1_TK_RNA_8_D21_HSC_T6_A67.fastp.json " }