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"CCCTG":1768479, "CCCCA":2095114, "CCCCT":1678538, "CCCCC":1913266, "CCCCG":1293851, "CCCGA":682177, "CCCGT":551583, "CCCGC":1190212, "CCCGG":1284525, "CCGAA":633969, "CCGAT":324799, "CCGAC":696133, "CCGAG":742275, "CCGTA":270567, "CCGTT":594304, "CCGTC":594557, "CCGTG":605875, "CCGCA":546805, "CCGCT":926623, "CCGCC":951416, "CCGCG":479941, "CCGGA":577259, "CCGGT":803058, "CCGGC":1063849, "CCGGG":1345636, "CGAAA":299827, "CGAAT":271717, "CGAAC":461487, "CGAAG":625498, "CGATA":189196, "CGATT":332639, "CGATC":841045, "CGATG":584217, "CGACA":345427, "CGACT":293085, "CGACC":597477, "CGACG":391138, "CGAGA":476058, "CGAGT":369520, "CGAGC":476499, "CGAGG":803080, "CGTAA":236806, "CGTAT":276147, "CGTAC":247606, "CGTAG":371322, "CGTTA":194793, "CGTTT":644177, "CGTTC":702808, "CGTTG":428208, "CGTCA":420731, "CGTCT":657184, "CGTCC":566203, "CGTCG":270151, "CGTGA":442614, "CGTGT":461536, "CGTGC":444683, "CGTGG":658785, "CGCAA":253960, "CGCAT":269062, "CGCAC":519058, "CGCAG":675248, "CGCTA":268889, "CGCTT":494594, "CGCTC":963324, "CGCTG":622817, "CGCCA":639344, "CGCCT":781846, "CGCCC":703296, "CGCCG":546604, "CGCGA":641360, "CGCGT":270801, "CGCGC":572162, "CGCGG":618271, "CGGAA":430414, "CGGAT":426795, "CGGAC":424474, "CGGAG":831209, "CGGTA":286325, "CGGTT":572463, "CGGTC":577415, "CGGTG":652818, "CGGCA":617855, "CGGCT":653500, "CGGCC":1127914, "CGGCG":876434, "CGGGA":1292122, "CGGGT":484012, "CGGGC":1054457, "CGGGG":1450144, "GAAAA":2394506, "GAAAT":1614886, "GAAAC":1250871, "GAAAG":1676952, "GAATA":1046775, "GAATT":1273186, "GAATC":997822, "GAATG":1317327, "GAACA":1314935, "GAACT":1314481, "GAACC":910970, "GAACG":357390, "GAAGA":2132932, "GAAGT":1468954, "GAAGC":1538990, "GAAGG":2009985, "GATAA":930921, "GATAT":746895, "GATAC":578369, "GATAG":709093, "GATTA":859891, "GATTT":1491199, "GATTC":1023371, "GATTG":725395, "GATCA":1557072, "GATCT":1259974, "GATCC":1344830, "GATCG":262665, "GATGA":1487774, "GATGT":1358857, "GATGC":1237347, "GATGG":1722689, "GACAA":1065727, "GACAT":985090, "GACAC":1056323, "GACAG":1607667, "GACTA":689557, "GACTT":1071177, "GACTC":889497, "GACTG":1132012, "GACCA":1097963, "GACCT":1411696, "GACCC":832988, "GACCG":526297, "GACGA":471460, "GACGT":321580, "GACGC":429385, "GACGG":681577, "GAGAA":2002576, "GAGAT":1262163, "GAGAC":1267628, "GAGAG":1922223, "GAGTA":872167, "GAGTT":1373064, "GAGTC":1156686, "GAGTG":1468355, "GAGCA":1272068, "GAGCT":1487152, "GAGCC":1367151, "GAGCG":644237, "GAGGA":2054211, "GAGGT":1822540, "GAGGC":2053213, "GAGGG":2106423, "GTAAA":1202973, "GTAAT":989899, "GTAAC":702383, "GTAAG":829787, "GTATA":694073, "GTATT":1053058, "GTATC":620948, "GTATG":701669, "GTACA":982023, "GTACT":865207, "GTACC":549341, "GTACG":226768, "GTAGA":1029628, "GTAGT":980049, "GTAGC":892435, "GTAGG":1036157, "GTTAA":895432, "GTTAT":755597, "GTTAC":619523, "GTTAG":645290, "GTTTA":1043965, "GTTTT":2333626, "GTTTC":1835577, "GTTTG":1392572, "GTTCA":1660892, "GTTCT":2035657, "GTTCC":1277137, "GTTCG":292339, "GTTGA":1108105, "GTTGT":1298902, "GTTGC":1143865, "GTTGG":1353103, "GTCAA":1044734, "GTCAT":1300264, "GTCAC":1530369, "GTCAG":1517773, "GTCTA":651641, "GTCTT":1832431, "GTCTC":1674938, "GTCTG":1682147, "GTCCA":1561713, "GTCCT":1563509, "GTCCC":1621404, "GTCCG":407025, "GTCGA":298537, "GTCGT":412425, "GTCGC":347699, "GTCGG":485206, "GTGAA":1355580, "GTGAT":1238783, "GTGAC":979982, "GTGAG":1460858, "GTGTA":858405, "GTGTT":1187670, "GTGTC":1106797, "GTGTG":1470405, "GTGCA":1500135, "GTGCT":1313874, "GTGCC":1155536, "GTGCG":403305, "GTGGA":1376206, "GTGGT":1971694, "GTGGC":2046124, "GTGGG":1829728, "GCAAA":1454354, "GCAAT":1041554, "GCAAC":1179698, "GCAAG":1089928, "GCATA":778981, "GCATT":1188060, "GCATC":1206644, "GCATG":1139378, "GCACA":1478647, "GCACT":1268891, "GCACC":1163932, "GCACG":974747, "GCAGA":1835494, "GCAGT":1774554, "GCAGC":1999534, "GCAGG":2308438, "GCTAA":780001, "GCTAT":1210413, "GCTAC":747640, "GCTAG":614599, "GCTTA":689998, "GCTTT":1687861, "GCTTC":1864687, "GCTTG":1756910, "GCTCA":1683687, "GCTCT":1624497, "GCTCC":2224992, "GCTCG":532437, "GCTGA":1695357, "GCTGT":1659685, "GCTGC":1812032, "GCTGG":2901201, "GCCAA":1400339, "GCCAT":1397371, "GCCAC":1725026, "GCCAG":2150907, "GCCTA":614631, "GCCTT":1587656, "GCCTC":2037987, "GCCTG":1999843, "GCCCA":1719936, "GCCCT":1351346, "GCCCC":1484138, "GCCCG":774987, "GCCGA":710230, "GCCGT":452774, "GCCGC":764993, "GCCGG":1307076, "GCGAA":254763, "GCGAT":795864, "GCGAC":323372, "GCGAG":605114, "GCGTA":225147, "GCGTT":388592, "GCGTC":392915, "GCGTG":504756, "GCGCA":509970, "GCGCT":480198, "GCGCC":645517, "GCGCG":1152760, "GCGGA":631579, "GCGGT":500727, "GCGGC":1019270, "GCGGG":1196477, "GGAAA":1972906, "GGAAT":1295260, "GGAAC":1043482, "GGAAG":2455174, "GGATA":790082, "GGATT":1124302, "GGATC":1018791, "GGATG":1647932, "GGACA":1418423, "GGACT":1069171, "GGACC":1016709, "GGACG":588742, "GGAGA":2083102, "GGAGT":2042415, "GGAGC":1479230, "GGAGG":3265870, "GGTAA":885699, "GGTAT":756812, "GGTAC":728363, "GGTAG":1036509, "GGTTA":723822, "GGTTT":1536654, "GGTTC":1445498, "GGTTG":1287621, "GGTCA":1670407, "GGTCT":1546379, "GGTCC":1653448, "GGTCG":482614, "GGTGA":1620124, "GGTGT":1294742, "GGTGC":1195721, "GGTGG":2735926, "GGCAA":1739933, "GGCAT":1456593, "GGCAC":1426546, "GGCAG":2687496, "GGCTA":1173234, "GGCTT":1592155, "GGCTC":1599594, "GGCTG":2887259, "GGCCA":1957843, "GGCCT":1737477, "GGCCC":1580968, "GGCCG":1273808, "GGCGA":646262, "GGCGT":567609, "GGCGC":1302129, "GGCGG":1526538, "GGGAA":1911945, "GGGAT":1281458, "GGGAC":1252488, "GGGAG":3114739, "GGGTA":872318, "GGGTT":1325471, "GGGTC":1339400, "GGGTG":1846483, "GGGCA":2022184, "GGGCT":1747804, "GGGCC":1929832, "GGGCG":1118986, "GGGGA":2225747, "GGGGT":1783947, "GGGGC":2016486, "GGGGG":2416903 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 24676329, "total_bases": 1455903411, "q20_bases": 1425130618, "q30_bases": 1383742537, "total_cycles": 59, "quality_curves": { 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"mean":[33.1973,33.2454,33.1061,33.1383,33.2348,33.2193,33.2813,33.2903,33.3404,33.2865,33.2976,33.3014,33.3191,33.3144,33.323,33.316,33.2951,33.3133,33.3139,33.2958,33.302,33.2999,33.3075,33.3069,33.3093,33.384,33.3741,33.3732,33.3723,33.3672,33.3687,33.3634,33.3546,33.3574,33.3593,33.3548,33.353,33.3446,33.343,33.3463,33.3456,33.3335,33.342,33.3309,33.3418,33.0827,33.328,33.3351,33.3274,33.3257,33.3212,33.3173,33.318,33.3151,33.3086,33.3021,33.3114,33.3052,33.1058] }, "content_curves": { 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"GGTTC":1045018, "GGTTG":1300805, "GGTCA":1216712, "GGTCT":1216318, "GGTCC":952604, "GGTCG":551989, "GGTGA":1909275, "GGTGT":1763339, "GGTGC":1359096, "GGTGG":2770569, "GGCAA":1529615, "GGCAT":1462794, "GGCAC":1205345, "GGCAG":2153754, "GGCTA":927026, "GGCTT":1356195, "GGCTC":1599392, "GGCTG":3830793, "GGCCA":1998363, "GGCCT":1728881, "GGCCC":1980784, "GGCCG":1202461, "GGCGA":587003, "GGCGT":661450, "GGCGC":1026531, "GGCGG":1493805, "GGGAA":2051400, "GGGAT":1258527, "GGGAC":1442170, "GGGAG":3078537, "GGGTA":643598, "GGGTT":1299027, "GGGTC":1009973, "GGGTG":2033251, "GGGCA":1622092, "GGGCT":1895104, "GGGCC":1860465, "GGGCG":991024, "GGGGA":2044031, "GGGGT":1358559, "GGGGC":1708597, "GGGGG":5803186 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 24521618, "total_bases": 1446464593, "q20_bases": 1420855733, "q30_bases": 1383375400, "total_cycles": 59, "quality_curves": { 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"C":[33.1656,33.1009,32.9854,33.2359,33.3939,33.4407,33.4442,33.4494,33.4599,33.4631,33.4614,33.3745,33.4794,33.4697,33.4701,33.4755,33.4862,33.483,33.4717,33.4896,33.4817,33.4923,33.4842,33.4907,33.486,33.4825,33.5048,33.5025,33.4976,33.493,33.4867,33.4879,33.4893,33.4893,33.4879,33.4767,33.4824,33.4779,33.4751,33.4668,33.4662,33.4572,33.4571,33.4497,33.448,33.4362,33.4437,33.4308,33.4428,33.4119,33.4256,33.4133,33.4097,33.4008,33.4211,33.3949,33.4041,33.4041,33.3242], "G":[32.6992,33.18,33.1327,33.3119,33.4298,33.4979,33.5503,33.5619,33.5703,33.5843,33.5533,33.5019,33.5742,33.5886,33.5851,33.6003,33.603,33.6036,33.6117,33.6145,33.6104,33.6163,33.6163,33.6143,33.6129,33.6122,33.6108,33.6127,33.6061,33.6007,33.5997,33.596,33.5897,33.5999,33.5969,33.5985,33.5985,33.5935,33.5915,33.5964,33.588,33.5813,33.5743,33.5495,33.5639,33.5538,33.58,33.5692,33.5778,33.57,33.5648,33.566,33.5633,33.5763,33.5692,33.5656,33.5814,33.5779,33.525], "mean":[33.0238,33.2152,32.8569,33.0488,33.3989,33.4114,33.4171,33.438,33.4638,33.4368,33.4322,32.8422,33.4534,33.4486,33.4488,33.4485,33.4463,33.4487,33.4468,33.4465,33.4489,33.4534,33.4479,33.4456,33.4392,33.4746,33.4784,33.4758,33.4727,33.4637,33.4611,33.4623,33.4578,33.4587,33.4578,33.4573,33.4566,33.4553,33.4488,33.4467,33.4437,33.4291,33.4265,33.4226,33.4278,33.4276,33.4242,33.4239,33.4225,33.4163,33.4155,33.4198,33.4162,33.4043,33.4091,33.3999,33.4012,33.4012,33.2219] }, "content_curves": { 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"G":[0.385759,0.221618,0.207494,0.25487,0.272267,0.257567,0.200364,0.216245,0.215905,0.220681,0.261614,0.238191,0.234978,0.233113,0.237781,0.237595,0.238189,0.242124,0.245169,0.239543,0.237914,0.23749,0.233865,0.231588,0.233299,0.231929,0.232038,0.234987,0.239372,0.240424,0.241578,0.240849,0.234358,0.241538,0.237766,0.241118,0.240979,0.240815,0.238463,0.24222,0.237697,0.236034,0.239142,0.236526,0.238654,0.242964,0.240998,0.239368,0.241767,0.239224,0.238754,0.239498,0.242818,0.238602,0.242088,0.240929,0.242,0.238933,0.241362], "N":[1.59043e-06,0.000284361,0.00752096,0.00750004,0,0,0,0,0,0,0,0.0147643,0,0,8.15607e-08,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15607e-08,0,0,0,1.38663e-06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "GC":[0.786518,0.551061,0.566913,0.564709,0.493028,0.459359,0.370312,0.450299,0.438199,0.409578,0.50522,0.473459,0.465486,0.464066,0.470597,0.476229,0.47038,0.474816,0.479593,0.476069,0.475911,0.478111,0.470821,0.472682,0.47781,0.477493,0.481196,0.482041,0.486323,0.48592,0.489618,0.483803,0.484851,0.488362,0.482613,0.48315,0.486155,0.485996,0.485413,0.489085,0.484023,0.479649,0.48787,0.482277,0.483844,0.488625,0.480225,0.482325,0.487034,0.482399,0.489874,0.492433,0.489392,0.49134,0.49597,0.49235,0.491294,0.489224,0.485852] }, "kmer_count": { "AAAAA":5674155, "AAAAT":3114948, "AAAAC":1972713, "AAAAG":2339117, "AAATA":2401967, "AAATT":2206422, "AAATC":1524495, "AAATG":2117851, "AAACA":2283235, "AAACT":1737490, "AAACC":1207129, "AAACG":371901, "AAAGA":2207671, "AAAGT":1721379, "AAAGC":1484657, "AAAGG":1793307, "AATAA":1961542, "AATAT":1503091, "AATAC":1165725, "AATAG":1000795, "AATTA":1443972, "AATTT":2244278, "AATTC":1475600, "AATTG":1011482, "AATCA":1412249, "AATCT":1463403, 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"TAACA":1117615, "TAACT":958746, "TAACC":592357, "TAACG":209798, "TAAGA":1123938, "TAAGT":933290, "TAAGC":685188, "TAAGG":873123, "TATAA":1125261, "TATAT":1110668, "TATAC":722512, "TATAG":700147, "TATTA":1194990, "TATTT":2391788, "TATTC":1504672, "TATTG":1116872, "TATCA":1013272, "TATCT":1158150, "TATCC":765635, "TATCG":198744, "TATGA":896354, "TATGT":1078601, "TATGC":622381, "TATGG":754726, "TACAA":1515800, "TACAT":1134360, "TACAC":810277, "TACAG":1377078, "TACTA":731519, "TACTT":1285693, "TACTC":875630, "TACTG":1470742, "TACCA":952291, "TACCT":800977, "TACCC":776685, "TACCG":142358, "TACGA":239055, "TACGT":398475, "TACGC":156591, "TACGG":285091, "TAGAA":1264181, "TAGAT":857858, "TAGAC":556914, "TAGAG":1000625, "TAGTA":820684, "TAGTT":1011546, "TAGTC":757167, "TAGTG":802471, "TAGCA":976890, "TAGCT":1068493, "TAGCC":755941, "TAGCG":261264, "TAGGA":1069128, "TAGGT":825301, "TAGGC":1105136, "TAGGG":888556, "TTAAA":2265852, "TTAAT":1416836, "TTAAC":866468, "TTAAG":1118202, 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"TGGTC":1822030, "TGGTG":2525883, "TGGCA":1955146, "TGGCT":2512905, "TGGCC":1823468, "TGGCG":671411, "TGGGA":2074931, "TGGGT":1578895, "TGGGC":1943233, "TGGGG":2311379, "CAAAA":2575332, "CAAAT":1965091, "CAAAC":1430388, "CAAAG":2015277, "CAATA":1140879, "CAATT":1328712, "CAATC":994649, "CAATG":1437839, "CAACA":1576349, "CAACT":1174507, "CAACC":1294776, "CAACG":283461, "CAAGA":1394490, "CAAGT":1304724, "CAAGC":1039966, "CAAGG":1436375, "CATAA":1176278, "CATAT":1367508, "CATAC":828657, "CATAG":1000827, "CATTA":1108968, "CATTT":2434128, "CATTC":1501051, "CATTG":1265374, "CATCA":2075421, "CATCT":2281284, "CATCC":1558849, "CATCG":396650, "CATGA":1378407, "CATGT":1438636, "CATGC":1124221, "CATGG":1613239, "CACAA":1554928, "CACAT":1724655, "CACAC":2038420, "CACAG":2822626, "CACTA":1213351, "CACTT":1748671, "CACTC":1474811, "CACTG":2210530, "CACCA":2503731, "CACCT":1919862, "CACCC":1569896, "CACCG":659561, "CACGA":551986, "CACGT":578973, "CACGC":688114, "CACGG":1098435, "CAGAA":2235925, "CAGAT":1508169, "CAGAC":1263679, "CAGAG":2246726, "CAGTA":1112817, "CAGTT":1647472, "CAGTC":1320732, "CAGTG":2305460, "CAGCA":2821007, "CAGCT":2521282, "CAGCC":2231764, "CAGCG":628685, "CAGGA":2583810, "CAGGT":1985135, "CAGGC":2925488, "CAGGG":2509168, "CTAAA":1216836, "CTAAT":852912, "CTAAC":580166, "CTAAG":798866, "CTATA":718438, "CTATT":1448186, "CTATC":734652, "CTATG":836950, "CTACA":1210636, "CTACT":1517249, "CTACC":829383, "CTACG":381357, "CTAGA":837708, "CTAGT":625331, "CTAGC":655638, "CTAGG":845317, "CTTAA":1122564, "CTTAT":919046, "CTTAC":673018, "CTTAG":1252503, "CTTTA":1560822, "CTTTT":2855207, "CTTTC":2200709, "CTTTG":2100833, "CTTCA":2738882, "CTTCT":3499930, "CTTCC":2619830, "CTTCG":593037, "CTTGA":2162335, "CTTGT":1762694, "CTTGC":1458300, "CTTGG":2187005, "CTCAA":1636988, "CTCAT":1771477, "CTCAC":1562098, "CTCAG":2498486, "CTCTA":1161700, "CTCTT":2393262, "CTCTC":2292924, "CTCTG":2480244, "CTCCA":2791574, "CTCCT":3556471, "CTCCC":2570351, "CTCCG":1038597, "CTCGA":540130, "CTCGT":684124, "CTCGC":621387, "CTCGG":912937, "CTGAA":1992440, "CTGAT":1785250, "CTGAC":1167301, "CTGAG":2157599, "CTGTA":1488323, "CTGTT":1857038, "CTGTC":1667659, "CTGTG":2013762, "CTGCA":2135444, "CTGCT":2580007, "CTGCC":2059123, "CTGCG":568157, "CTGGA":2787172, "CTGGT":2193787, "CTGGC":1998904, "CTGGG":3140230, "CCAAA":2067355, "CCAAT":1240146, "CCAAC":1180435, "CCAAG":1601384, "CCATA":1265877, "CCATT":1608455, "CCATC":1755304, "CCATG":1635444, "CCACA":2268701, "CCACT":2214505, "CCACC":2186012, "CCACG":839785, "CCAGA":1863663, "CCAGT":1654357, "CCAGC":2429804, "CCAGG":3145857, "CCTAA":744818, "CCTAT":710177, "CCTAC":976451, "CCTAG":766187, "CCTTA":1220779, "CCTTT":2022350, "CCTTC":2374546, "CCTTG":2057447, "CCTCA":2186434, "CCTCT":2320977, "CCTCC":3121759, "CCTCG":875732, "CCTGA":1688949, "CCTGT":1760931, "CCTGC":2084526, "CCTGG":3063944, "CCCAA":1620435, "CCCAT":1450205, "CCCAC":2206912, "CCCAG":2725399, "CCCTA":828340, "CCCTT":1581961, "CCCTC":1949084, 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"CAGAC":1501028, "CAGAG":2536059, "CAGTA":1058421, "CAGTT":1480401, "CAGTC":1133093, "CAGTG":2329699, "CAGCA":2303952, "CAGCT":2473186, "CAGCC":2501005, "CAGCG":698313, "CAGGA":2937928, "CAGGT":1706490, "CAGGC":2101124, "CAGGG":1928479, "CTAAA":1155704, "CTAAT":815291, "CTAAC":600767, "CTAAG":1139478, "CTATA":672841, "CTATT":945447, "CTATC":643707, "CTATG":1268124, "CTACA":1219204, "CTACT":1492873, "CTACC":928227, "CTACG":370434, "CTAGA":943594, "CTAGT":603270, "CTAGC":604057, "CTAGG":887589, "CTTAA":1048006, "CTTAT":850838, "CTTAC":760810, "CTTAG":777107, "CTTTA":1178406, "CTTTT":2225069, "CTTTC":1561151, "CTTTG":2030701, "CTTCA":1985073, "CTTCT":2075895, "CTTCC":2204440, "CTTCG":712559, "CTTGA":1933822, "CTTGT":1193222, "CTTGC":1104417, "CTTGG":1684288, "CTCAA":1495462, "CTCAT":1364561, "CTCAC":1526410, "CTCAG":2213009, "CTCTA":998948, "CTCTT":1681495, "CTCTC":1637465, "CTCTG":2322537, "CTCCA":2058452, "CTCCT":2423101, "CTCCC":2546738, "CTCCG":859470, "CTCGA":402868, "CTCGT":457747, "CTCGC":583268, "CTCGG":1238898, "CTGAA":2231654, "CTGAT":1541998, "CTGAC":1411433, "CTGAG":2810423, "CTGTA":1889826, "CTGTT":1600491, "CTGTC":1667202, "CTGTG":2407692, "CTGCA":2097862, "CTGCT":2143393, "CTGCC":2382662, "CTGCG":811564, "CTGGA":3039035, "CTGGT":1704925, "CTGGC":2433157, "CTGGG":3198946, "CCAAA":1929773, "CCAAT":888767, "CCAAC":1250514, "CCAAG":2049058, "CCATA":701995, "CCATT":1426948, "CCATC":1685073, "CCATG":1788048, "CCACA":1728467, "CCACT":1488298, "CCACC":2275895, "CCACG":732706, "CCAGA":2315552, "CCAGT":1581910, "CCAGC":2830536, "CCAGG":3246232, "CCTAA":962395, "CCTAT":769255, "CCTAC":911733, "CCTAG":854251, "CCTTA":844034, "CCTTT":1656109, "CCTTC":1993839, "CCTTG":1485035, "CCTCA":2081342, "CCTCT":1884287, "CCTCC":2957796, "CCTCG":846449, "CCTGA":2157336, "CCTGT":2191735, "CCTGC":2211084, "CCTGG":3149830, "CCCAA":1617697, "CCCAT":1393342, "CCCAC":1653695, "CCCAG":3488652, "CCCTA":829500, "CCCTT":1536453, "CCCTC":2037954, "CCCTG":2402815, "CCCCA":2194807, "CCCCT":1861181, "CCCCC":1927594, "CCCCG":1223646, "CCCGA":762353, "CCCGT":569101, "CCCGC":1098161, "CCCGG":1282613, "CCGAA":553958, "CCGAT":637374, "CCGAC":468278, "CCGAG":965271, "CCGTA":215430, "CCGTT":308110, "CCGTC":589793, "CCGTG":759582, "CCGCA":853165, "CCGCT":667347, "CCGCC":1552366, "CCGCG":794612, "CCGGA":648985, "CCGGT":495173, "CCGGC":1236412, "CCGGG":1253392, "CGAAA":492912, "CGAAT":298248, "CGAAC":333010, "CGAAG":635566, "CGATA":241189, "CGATT":280800, "CGATC":597136, "CGATG":441066, "CGACA":456352, "CGACT":338643, "CGACC":499650, "CGACG":334945, "CGAGA":819480, "CGAGT":531560, "CGAGC":621098, "CGAGG":954934, "CGTAA":211271, "CGTAT":191358, "CGTAC":198580, "CGTAG":224511, "CGTTA":196380, "CGTTT":394835, "CGTTC":347807, "CGTTG":352571, "CGTCA":423737, "CGTCT":514492, "CGTCC":691683, "CGTCG":295609, "CGTGA":591380, "CGTGT":641145, "CGTGC":844279, "CGTGG":957060, "CGCAA":381054, "CGCAT":324224, "CGCAC":659083, "CGCAG":622953, "CGCTA":576593, "CGCTT":960138, "CGCTC":693881, "CGCTG":711501, "CGCCA":858647, "CGCCT":930841, "CGCCC":1072372, "CGCCG":938376, "CGCGA":257350, "CGCGT":502339, "CGCGC":670811, "CGCGG":720993, "CGGAA":648677, "CGGAT":346433, "CGGAC":439033, "CGGAG":885103, "CGGTA":165661, "CGGTT":335066, "CGGTC":555311, "CGGTG":855103, "CGGCA":768639, "CGGCT":908489, "CGGCC":1162729, "CGGCG":890986, "CGGGA":1313229, "CGGGT":936799, "CGGGC":955693, "CGGGG":1318776, "GAAAA":3165787, "GAAAT":2041862, "GAAAC":1751367, "GAAAG":2300997, "GAATA":1011765, "GAATT":1483375, "GAATC":1050993, "GAATG":1582927, "GAACA":1628278, "GAACT":1465452, "GAACC":1296952, "GAACG":591490, "GAAGA":3592181, "GAAGT":1729833, "GAAGC":2069543, "GAAGG":2618921, "GATAA":983369, "GATAT":841632, "GATAC":608634, "GATAG":699817, "GATTA":971325, "GATTT":1502724, "GATTC":1140405, "GATTG":1060088, "GATCA":1295128, "GATCT":1323392, "GATCC":1147424, "GATCG":1328408, "GATGA":2130971, "GATGT":1257202, "GATGC":1237854, "GATGG":1825887, "GACAA":1521580, "GACAT":1256169, "GACAC":1018070, "GACAG":1685417, "GACTA":730345, "GACTT":1336766, "GACTC":1077469, "GACTG":1336448, "GACCA":1647632, "GACCT":1504780, "GACCC":1284368, "GACCG":604165, "GACGA":623362, "GACGT":397365, "GACGC":488348, "GACGG":611782, "GAGAA":2969540, "GAGAT":1730273, "GAGAC":1740699, "GAGAG":2221645, "GAGTA":887384, "GAGTT":1687985, "GAGTC":1235516, "GAGTG":1537891, "GAGCA":1755886, "GAGCT":1728744, "GAGCC":1964797, "GAGCG":851440, "GAGGA":3568978, "GAGGT":1814839, "GAGGC":2752350, "GAGGG":1762745, "GTAAA":1086419, "GTAAT":864822, "GTAAC":613447, "GTAAG":632940, "GTATA":649398, "GTATT":1019626, "GTATC":562570, "GTATG":786003, "GTACA":843914, "GTACT":715192, "GTACC":664336, "GTACG":226436, "GTAGA":964378, "GTAGT":1271093, "GTAGC":737225, "GTAGG":629731, "GTTAA":823099, "GTTAT":726849, "GTTAC":667359, "GTTAG":585925, "GTTTA":1032307, "GTTTT":1949417, "GTTTC":1329277, "GTTTG":1530205, "GTTCA":1202028, "GTTCT":1734492, "GTTCC":1150063, "GTTCG":633085, "GTTGA":1185296, "GTTGT":1024294, "GTTGC":1033967, "GTTGG":1329796, "GTCAA":1007202, "GTCAT":1045265, "GTCAC":1088571, "GTCAG":1216572, "GTCTA":578268, "GTCTT":1292166, "GTCTC":1361872, "GTCTG":1364719, "GTCCA":1289200, "GTCCT":1283413, "GTCCC":1720153, "GTCCG":698785, "GTCGA":312046, "GTCGT":414967, "GTCGC":391567, "GTCGG":572568, "GTGAA":1940989, "GTGAT":1454280, "GTGAC":1367276, "GTGAG":1577953, "GTGTA":833126, "GTGTT":1326061, "GTGTC":1548321, "GTGTG":2017587, "GTGCA":1249052, "GTGCT":1504066, "GTGCC":1673167, "GTGCG":1010096, "GTGGA":2121407, "GTGGT":1634383, "GTGGC":2011846, "GTGGG":2169324, "GCAAA":1527939, "GCAAT":845978, "GCAAC":1028802, "GCAAG":1564491, "GCATA":566679, "GCATT":1090852, "GCATC":1260151, "GCATG":1172492, "GCACA":1229054, "GCACT":1342081, "GCACC":1212459, "GCACG":467078, "GCAGA":2104797, "GCAGT":1568799, "GCAGC":1903818, "GCAGG":1985415, "GCTAA":796420, "GCTAT":1043272, "GCTAC":1191083, "GCTAG":720845, "GCTTA":666848, "GCTTT":1485293, "GCTTC":1459911, "GCTTG":1634620, "GCTCA":1517743, "GCTCT":1453028, "GCTCC":1610359, "GCTCG":532250, "GCTGA":2575345, "GCTGT":2031788, "GCTGC":2154775, "GCTGG":3123412, "GCCAA":1610108, "GCCAT":1439348, "GCCAC":1648939, "GCCAG":2181788, "GCCTA":840898, "GCCTT":1492130, "GCCTC":2051013, "GCCTG":2677330, "GCCCA":2065134, "GCCCT":1698792, "GCCCC":1865103, "GCCCG":1045467, "GCCGA":997540, "GCCGT":523230, "GCCGC":1247225, "GCCGG":1049095, "GCGAA":357395, "GCGAT":327983, "GCGAC":418916, "GCGAG":644616, "GCGTA":153459, "GCGTT":312817, "GCGTC":549907, "GCGTG":990020, "GCGCA":497379, "GCGCT":910855, "GCGCC":926566, "GCGCG":850720, "GCGGA":601200, "GCGGT":582483, "GCGGC":1084181, "GCGGG":1308003, "GGAAA":2674304, "GGAAT":1380501, "GGAAC":1337181, "GGAAG":2915661, "GGATA":783915, "GGATT":1360702, "GGATC":1547177, "GGATG":1625483, "GGACA":1549249, "GGACT":1340952, "GGACC":1495611, "GGACG":659088, "GGAGA":2804987, "GGAGT":1945174, "GGAGC":2105934, "GGAGG":4043449, "GGTAA":674672, "GGTAT":689467, "GGTAC":532606, "GGTAG":679254, "GGTTA":612983, "GGTTT":1329892, "GGTTC":1037435, "GGTTG":1291155, "GGTCA":1212441, "GGTCT":1212268, "GGTCC":948200, "GGTCG":548032, "GGTGA":1903260, "GGTGT":1749916, "GGTGC":1347109, "GGTGG":2746521, "GGCAA":1522766, "GGCAT":1458384, "GGCAC":1199615, "GGCAG":2147085, "GGCTA":924009, "GGCTT":1351797, "GGCTC":1591243, "GGCTG":3817553, "GGCCA":1989809, "GGCCT":1723501, "GGCCC":1938733, "GGCCG":1186618, "GGCGA":578669, "GGCGT":655132, "GGCGC":1009421, "GGCGG":1462323, "GGGAA":2044130, "GGGAT":1254243, "GGGAC":1437027, "GGGAG":3068395, "GGGTA":639099, "GGGTT":1275896, "GGGTC":1003648, "GGGTG":2001624, "GGGCA":1615164, "GGGCT":1885104, "GGGCC":1824125, "GGGCG":953816, "GGGGA":2034736, "GGGGT":1315114, "GGGGC":1655506, "GGGGG":5213263 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46079_1_TK_RNA_3_D17_PL_D1_A62_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46079_1_TK_RNA_3_D17_PL_D1_A62_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46079_1_TK_RNA_3_D17_PL_D1_A62_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46079_1_TK_RNA_3_D17_PL_D1_A62_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46079_1_TK_RNA_3_D17_PL_D1_A62.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46079_1_TK_RNA_3_D17_PL_D1_A62.fastp.json " }