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"CCCTT":1960999, "CCCTC":2297527, "CCCTG":2284508, "CCCCA":2623662, "CCCCT":1949127, "CCCCC":2139032, "CCCCG":1379087, "CCCGA":856614, "CCCGT":717833, "CCCGC":1241289, "CCCGG":1444414, "CCGAA":683381, "CCGAT":454368, "CCGAC":750710, "CCGAG":919523, "CCGTA":390125, "CCGTT":661116, "CCGTC":802242, "CCGTG":821688, "CCGCA":708887, "CCGCT":990732, "CCGCC":1214154, "CCGCG":600528, "CCGGA":786646, "CCGGT":864410, "CCGGC":1318602, "CCGGG":1502126, "CGAAA":382581, "CGAAT":388631, "CGAAC":517229, "CGAAG":874805, "CGATA":273088, "CGATT":472665, "CGATC":821141, "CGATG":866729, "CGACA":462592, "CGACT":384578, "CGACC":596900, "CGACG":502957, "CGAGA":615207, "CGAGT":482582, "CGAGC":613417, "CGAGG":1009144, "CGTAA":305452, "CGTAT":346571, "CGTAC":350245, "CGTAG":568255, "CGTTA":235181, "CGTTT":744554, "CGTTC":842678, "CGTTG":624689, "CGTCA":594712, "CGTCT":896670, "CGTCC":759253, "CGTCG":378568, "CGTGA":588368, "CGTGT":607983, "CGTGC":594607, "CGTGG":897835, "CGCAA":344549, "CGCAT":365606, "CGCAC":626699, "CGCAG":861196, "CGCTA":267163, "CGCTT":704712, "CGCTC":1043081, "CGCTG":865269, "CGCCA":847529, "CGCCT":987602, "CGCCC":909365, "CGCCG":687113, "CGCGA":543050, "CGCGT":342669, "CGCGC":666976, "CGCGG":782964, "CGGAA":595898, "CGGAT":636524, "CGGAC":519207, "CGGAG":1073866, "CGGTA":397147, "CGGTT":654983, "CGGTC":726001, "CGGTG":901208, "CGGCA":807592, "CGGCT":868109, "CGGCC":1462606, "CGGCG":1106617, "CGGGA":1272251, "CGGGT":646372, "CGGGC":1382067, "CGGGG":1747864, "GAAAA":2876144, "GAAAT":1989062, "GAAAC":1560167, "GAAAG":2131471, "GAATA":1257651, "GAATT":1580486, "GAATC":1294940, "GAATG":1669545, "GAACA":1673853, "GAACT":1662617, "GAACC":1167012, "GAACG":460159, "GAAGA":2722184, "GAAGT":1883020, "GAAGC":1982514, "GAAGG":2618763, "GATAA":1162486, "GATAT":968477, "GATAC":761569, "GATAG":958269, "GATTA":1079747, "GATTT":1937893, "GATTC":1319652, "GATTG":907200, "GATCA":1751958, "GATCT":1746035, "GATCC":1460672, "GATCG":357692, "GATGA":2047786, "GATGT":1814171, "GATGC":1521466, "GATGG":2325154, "GACAA":1375768, "GACAT":1284113, "GACAC":1330359, "GACAG":2040226, "GACTA":776088, "GACTT":1386813, "GACTC":1176718, "GACTG":1463370, "GACCA":1415368, "GACCT":1517985, "GACCC":1062531, "GACCG":582745, "GACGA":659007, "GACGT":455439, "GACGC":551033, "GACGG":849701, "GAGAA":2461357, "GAGAT":1606746, "GAGAC":1586130, "GAGAG":2312364, "GAGTA":1115364, "GAGTT":1617400, "GAGTC":1412583, "GAGTG":1696222, "GAGCA":1694471, "GAGCT":1892835, "GAGCC":1825179, "GAGCG":773097, "GAGGA":2604066, "GAGGT":2196294, "GAGGC":2564545, "GAGGG":2675875, "GTAAA":1472242, "GTAAT":1266058, "GTAAC":911697, "GTAAG":1047346, "GTATA":839115, "GTATT":1317860, "GTATC":799768, "GTATG":874119, "GTACA":1327615, "GTACT":1193841, "GTACC":724281, "GTACG":303990, "GTAGA":1379383, "GTAGT":1301023, "GTAGC":1200736, "GTAGG":1407865, "GTTAA":1076247, "GTTAT":938745, "GTTAC":748129, "GTTAG":817292, "GTTTA":1311010, "GTTTT":2889680, "GTTTC":2249052, "GTTTG":1794662, "GTTCA":2045311, "GTTCT":2564484, "GTTCC":1672264, "GTTCG":371129, "GTTGA":1524026, "GTTGT":1673937, "GTTGC":1377395, "GTTGG":1857636, "GTCAA":1382645, "GTCAT":1717915, "GTCAC":1782136, "GTCAG":2019268, "GTCTA":803384, "GTCTT":2364023, "GTCTC":2128712, "GTCTG":2088282, "GTCCA":2094716, "GTCCT":2028714, "GTCCC":1832114, "GTCCG":561227, "GTCGA":430048, "GTCGT":562265, "GTCGC":451414, "GTCGG":663406, "GTGAA":1765220, "GTGAT":1620927, "GTGAC":1325917, "GTGAG":1867853, "GTGTA":1136853, "GTGTT":1548889, "GTGTC":1414718, "GTGTG":1869034, "GTGCA":1705766, "GTGCT":1752595, "GTGCC":1517630, "GTGCG":492582, "GTGGA":1870812, "GTGGT":2346603, "GTGGC":2420078, "GTGGG":2375870, "GCAAA":1817536, "GCAAT":1371045, "GCAAC":1298126, "GCAAG":1400066, "GCATA":987826, "GCATT":1530526, "GCATC":1622397, "GCATG":1508401, "GCACA":1902302, "GCACT":1581132, "GCACC":1481037, "GCACG":1049992, "GCAGA":2209575, "GCAGT":2032169, "GCAGC":2691081, "GCAGG":3014438, "GCTAA":962576, "GCTAT":1135347, "GCTAC":907539, "GCTAG":755333, "GCTTA":874049, "GCTTT":2208752, "GCTTC":2500410, "GCTTG":2178267, "GCTCA":2132158, "GCTCT":2133893, "GCTCC":2588428, "GCTCG":736277, "GCTGA":2183321, "GCTGT":2183908, "GCTGC":2429075, "GCTGG":3640729, "GCCAA":1801880, "GCCAT":1822676, "GCCAC":2274276, "GCCAG":2911403, "GCCTA":738021, "GCCTT":2150215, "GCCTC":2653697, "GCCTG":2583701, "GCCCA":2178570, "GCCCT":1752139, "GCCCC":1907385, "GCCCG":981036, "GCCGA":763286, "GCCGT":673476, "GCCGC":1007649, "GCCGG":1513069, "GCGAA":372519, "GCGAT":775661, "GCGAC":418878, "GCGAG":770216, "GCGTA":327142, "GCGTT":497162, "GCGTC":536260, "GCGTG":672201, "GCGCA":643301, "GCGCT":668434, "GCGCC":830340, "GCGCG":1110556, "GCGGA":823966, "GCGGT":698007, "GCGGC":1329201, "GCGGG":1524215, "GGAAA":2436654, "GGAAT":1616448, "GGAAC":1369361, "GGAAG":3088215, "GGATA":1032152, "GGATT":1449763, "GGATC":1340061, "GGATG":2221740, "GGACA":1777037, "GGACT":1414960, "GGACC":1241928, "GGACG":721893, "GGAGA":2645600, "GGAGT":2237226, "GGAGC":1919092, "GGAGG":3911016, "GGTAA":1166680, "GGTAT":965311, "GGTAC":997015, "GGTAG":1398207, "GGTTA":891098, "GGTTT":1981543, "GGTTC":1773583, "GGTTG":1627200, "GGTCA":2027372, "GGTCT":2023288, "GGTCC":1904098, "GGTCG":584396, "GGTGA":2171225, "GGTGT":1768933, "GGTGC":1601268, "GGTGG":3411231, "GGCAA":1971185, "GGCAT":1925804, "GGCAC":1836156, "GGCAG":3433537, "GGCTA":1198408, "GGCTT":2125844, "GGCTC":2105396, "GGCTG":3596494, "GGCCA":2625108, "GGCCT":2374656, "GGCCC":2035996, "GGCCG":1488442, "GGCGA":866649, "GGCGT":776468, "GGCGC":1406313, "GGCGG":1951185, "GGGAA":2416458, "GGGAT":1637450, "GGGAC":1582024, "GGGAG":3532955, "GGGTA":1165637, "GGGTT":1684716, "GGGTC":1669295, "GGGTG":2442557, "GGGCA":2680089, "GGGCT":2324590, "GGGCC":2447685, "GGGCG":1425691, "GGGGA":2737718, "GGGGT":2273438, "GGGGC":2673989, "GGGGG":3274192 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 31112127, "total_bases": 1835615493, "q20_bases": 1795073359, "q30_bases": 1743223092, "total_cycles": 59, 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"mean":[33.4026,33.3013,33.1149,33.1512,33.2332,33.209,33.2698,33.2789,33.3267,33.2629,33.295,33.2944,33.309,33.3139,33.3072,33.3057,33.2796,33.2903,33.2965,33.2898,33.2867,33.2828,33.2745,33.2732,33.2744,33.3424,33.3463,33.3431,33.3406,33.3325,33.334,33.3345,33.3196,33.3242,33.3248,33.314,33.318,33.3104,33.3114,33.3073,33.3064,33.303,33.2998,33.2919,33.2941,33.2951,33.291,33.2877,33.2894,33.2831,33.2855,33.2851,33.2779,33.2716,33.2655,33.2619,33.2562,33.2594,33.0679] }, "content_curves": { 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"GTTCC":1539790, "GTTCG":701285, "GTTGA":1476251, "GTTGT":1257533, "GTTGC":1278088, "GTTGG":1697401, "GTCAA":1280978, "GTCAT":1364516, "GTCAC":1419320, "GTCAG":1603779, "GTCTA":716795, "GTCTT":1561931, "GTCTC":1739295, "GTCTG":1771683, "GTCCA":1612306, "GTCCT":1689642, "GTCCC":1990285, "GTCCG":766474, "GTCGA":423782, "GTCGT":573416, "GTCGC":538548, "GTCGG":717515, "GTGAA":2454225, "GTGAT":1806520, "GTGAC":1676257, "GTGAG":1985226, "GTGTA":1019954, "GTGTT":1694200, "GTGTC":1753386, "GTGTG":2500848, "GTGCA":1584165, "GTGCT":1937895, "GTGCC":2066732, "GTGCG":1063728, "GTGGA":2893574, "GTGGT":2186821, "GTGGC":2626097, "GTGGG":2618386, "GCAAA":2024012, "GCAAT":1065567, "GCAAC":1328023, "GCAAG":2144194, "GCATA":688339, "GCATT":1347155, "GCATC":1606540, "GCATG":1536306, "GCACA":1614332, "GCACT":1557732, "GCACC":1648387, "GCACG":625456, "GCAGA":2822495, "GCAGT":2003266, "GCAGC":2608686, "GCAGG":2610766, "GCTAA":1034978, "GCTAT":1153241, "GCTAC":1385776, "GCTAG":840470, "GCTTA":842962, 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"GC":[0.771457,0.538997,0.564947,0.55382,0.490462,0.453271,0.372011,0.451302,0.43828,0.409285,0.505135,0.482552,0.466949,0.464185,0.469582,0.476517,0.469872,0.472529,0.479082,0.473772,0.474637,0.479221,0.472253,0.475778,0.480446,0.474566,0.480405,0.483343,0.484333,0.485019,0.490044,0.482917,0.484568,0.489529,0.483013,0.484497,0.489564,0.486915,0.48658,0.492408,0.486555,0.484269,0.491031,0.486338,0.487978,0.492557,0.484704,0.486612,0.492282,0.486485,0.492244,0.495888,0.491199,0.492509,0.497946,0.493044,0.492404,0.493457,0.490399] }, "kmer_count": { "AAAAA":7105033, "AAAAT":3766223, "AAAAC":2466906, "AAAAG":2846734, "AAATA":2914923, "AAATT":2625625, "AAATC":1900473, "AAATG":2515569, "AAACA":2840803, "AAACT":2130881, "AAACC":1544654, "AAACG":481239, "AAAGA":2671529, "AAAGT":2178035, "AAAGC":1855148, "AAAGG":2280319, "AATAA":2366855, "AATAT":1850903, "AATAC":1410218, "AATAG":1242395, "AATTA":1667567, "AATTT":2782016, "AATTC":1846866, "AATTG":1227530, "AATCA":1799692, "AATCT":1914135, 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"CACGG":1262256, "CAGAA":2785092, "CAGAT":1939645, "CAGAC":1641737, "CAGAG":2821627, "CAGTA":1447131, "CAGTT":2119908, "CAGTC":1738627, "CAGTG":2765745, "CAGCA":3588957, "CAGCT":3334083, "CAGCC":2899382, "CAGCG":841869, "CAGGA":3310848, "CAGGT":2647186, "CAGGC":3301019, "CAGGG":3301389, "CTAAA":1451348, "CTAAT":1034179, "CTAAC":689814, "CTAAG":976164, "CTATA":842724, "CTATT":1461940, "CTATC":819195, "CTATG":993689, "CTACA":1406650, "CTACT":1588361, "CTACC":913866, "CTACG":412806, "CTAGA":1020899, "CTAGT":762609, "CTAGC":768060, "CTAGG":1075537, "CTTAA":1419467, "CTTAT":1163329, "CTTAC":806011, "CTTAG":1282399, "CTTTA":1977799, "CTTTT":3617187, "CTTTC":2881828, "CTTTG":2743519, "CTTCA":3723964, "CTTCT":4797468, "CTTCC":3382421, "CTTCG":753523, "CTTGA":2638568, "CTTGT":2350029, "CTTGC":1923858, "CTTGG":3044914, "CTCAA":2089061, "CTCAT":2321820, "CTCAC":1921423, "CTCAG":3085212, "CTCTA":1372239, "CTCTT":3139245, "CTCTC":2857403, "CTCTG":3178653, "CTCCA":3666555, "CTCCT":4419238, "CTCCC":2951628, "CTCCG":1203108, "CTCGA":743392, "CTCGT":945743, "CTCGC":787487, "CTCGG":1277970, "CTGAA":2486163, "CTGAT":1988156, "CTGAC":1499735, "CTGAG":2766849, "CTGTA":1910573, "CTGTT":2415398, "CTGTC":2174280, "CTGTG":2614988, "CTGCA":2758128, "CTGCT":3265711, "CTGCC":2690693, "CTGCG":779267, "CTGGA":3326590, "CTGGT":2632796, "CTGGC":2604660, "CTGGG":3938363, "CCAAA":2547334, "CCAAT":1615359, "CCAAC":1506905, "CCAAG":2012727, "CCATA":1442108, "CCATT":2036172, "CCATC":2242489, "CCATG":2132259, "CCACA":2943772, "CCACT":2549763, "CCACC":2839446, "CCACG":1158080, "CCAGA":2447786, "CCAGT":2233464, "CCAGC":3224139, "CCAGG":4053426, "CCTAA":905986, "CCTAT":840105, "CCTAC":1008662, "CCTAG":917528, "CCTTA":1316619, "CCTTT":2591891, "CCTTC":3096112, "CCTTG":2675748, "CCTCA":2802287, "CCTCT":2975368, "CCTCC":3802519, "CCTCG":1210858, "CCTGA":2092674, "CCTGT":2272829, "CCTGC":2582436, "CCTGG":3609595, "CCCAA":1984597, "CCCAT":1808501, "CCCAC":2490824, "CCCAG":3447549, "CCCTA":929347, 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"mean":[33.4573,33.3756,33.189,33.2245,33.3071,33.284,33.3456,33.356,33.4032,33.3396,33.3714,33.3713,33.3868,33.3911,33.3843,33.3838,33.3598,33.3689,33.3757,33.3708,33.3667,33.3626,33.3558,33.3542,33.3561,33.4245,33.4284,33.425,33.422,33.4149,33.4155,33.4161,33.4023,33.4063,33.4058,33.3969,33.3995,33.3939,33.3935,33.3907,33.3886,33.3861,33.3829,33.3748,33.3768,33.3765,33.3732,33.3702,33.3713,33.3652,33.3669,33.3673,33.3594,33.3533,33.3474,33.3428,33.3366,33.3406,33.1475] }, "content_curves": { 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"TAATG":1207594, "TAACA":1191189, "TAACT":979657, "TAACC":790599, "TAACG":212638, "TAAGA":1340135, "TAAGT":1003904, "TAAGC":832159, "TAAGG":1080103, "TATAA":1098936, "TATAT":1093213, "TATAC":699784, "TATAG":785267, "TATTA":1147841, "TATTT":2308715, "TATTC":1178651, "TATTG":1206859, "TATCA":1193251, "TATCT":1120968, "TATCC":924617, "TATCG":276608, "TATGA":1485315, "TATGT":1236098, "TATGC":1052834, "TATGG":1294167, "TACAA":1637413, "TACAT":1188381, "TACAC":938213, "TACAG":1749344, "TACTA":992139, "TACTT":1269081, "TACTC":1248715, "TACTG":1317540, "TACCA":1371793, "TACCT":1318369, "TACCC":947426, "TACCG":372282, "TACGA":428111, "TACGT":360224, "TACGC":302167, "TACGG":359605, "TAGAA":1558987, "TAGAT":886134, "TAGAC":702663, "TAGAG":1381689, "TAGTA":770003, "TAGTT":887674, "TAGTC":833793, "TAGTG":1183351, "TAGCA":1018534, "TAGCT":1106383, "TAGCC":898097, "TAGCG":205393, "TAGGA":1065918, "TAGGT":682519, "TAGGC":822719, "TAGGG":750366, "TTAAA":2205727, "TTAAT":1398612, "TTAAC":898306, "TTAAG":1265604, "TTATA":1103196, "TTATT":1977844, "TTATC":1062959, "TTATG":1257804, "TTACA":1591280, "TTACT":1293642, "TTACC":1002782, "TTACG":279501, "TTAGA":1144481, "TTAGT":931650, "TTAGC":893478, "TTAGG":827425, "TTTAA":2218871, "TTTAT":2094696, "TTTAC":1234228, "TTTAG":1297953, "TTTTA":2614216, "TTTTT":5645125, "TTTTC":2527653, "TTTTG":2896620, "TTTCA":2213597, "TTTCT":3053448, "TTTCC":2225373, "TTTCG":419255, "TTTGA":2646849, "TTTGT":2548100, "TTTGC":1768168, "TTTGG":2459911, "TTCAA":2031956, "TTCAT":1895183, "TTCAC":1652131, "TTCAG":2379261, "TTCTA":1470209, "TTCTT":2632429, "TTCTC":2367456, "TTCTG":2915470, "TTCCA":2336020, "TTCCT":2908483, "TTCCC":2140630, "TTCCG":620498, "TTCGA":700289, "TTCGT":567048, "TTCGC":529988, "TTCGG":871360, "TTGAA":2479666, "TTGAT":1831049, "TTGAC":1268308, "TTGAG":2376223, "TTGTA":1392326, "TTGTT":2061725, "TTGTC":1310488, "TTGTG":1928386, "TTGCA":1613223, "TTGCT":1969549, "TTGCC":1744418, "TTGCG":391390, "TTGGA":2309562, "TTGGT":1670089, "TTGGC":1801670, "TTGGG":1949418, "TCAAA":2043022, "TCAAT":1199780, "TCAAC":1465459, "TCAAG":2406936, "TCATA":990334, "TCATT":1870868, "TCATC":2002579, "TCATG":1855198, "TCACA":1736536, "TCACT":1898965, "TCACC":2251386, "TCACG":559366, "TCAGA":2374693, "TCAGT":1766570, "TCAGC":2174906, "TCAGG":2165461, "TCTAA":1072111, "TCTAT":1071214, "TCTAC":1327944, "TCTAG":953651, "TCTTA":1192912, "TCTTT":2422638, "TCTTC":2494881, "TCTTG":1861978, "TCTCA":2132101, "TCTCT":2540795, "TCTCC":2410988, "TCTCG":722331, "TCTGA":2221694, "TCTGT":2356885, "TCTGC":2172101, "TCTGG":2916187, "TCCAA":1812519, "TCCAT":1692257, "TCCAC":1793715, "TCCAG":3065937, "TCCTA":1322760, "TCCTT":2100605, "TCCTC":2550639, "TCCTG":3481742, "TCCCA":2781343, "TCCCT":2414642, "TCCCC":2276715, "TCCCG":1089454, "TCCGA":579637, "TCCGT":562126, "TCCGC":1108460, "TCCGG":960736, "TCGAA":603535, "TCGAT":378992, "TCGAC":465250, "TCGAG":840718, "TCGTA":309442, "TCGTT":407479, "TCGTC":633740, "TCGTG":916498, "TCGCA":473054, "TCGCT":1061549, "TCGCC":1002271, "TCGCG":317722, "TCGGA":644357, "TCGGT":554643, "TCGGC":1050563, "TCGGG":1333298, "TGAAA":3045594, "TGAAT":1855087, "TGAAC":1974517, "TGAAG":3848947, "TGATA":1185480, "TGATT":1843564, "TGATC":1818938, "TGATG":2704976, "TGACA":2030346, "TGACT":1793886, "TGACC":1973155, "TGACG":589023, "TGAGA":2672015, "TGAGT":1739207, "TGAGC":2394377, "TGAGG":3003919, "TGTAA":1449155, "TGTAT":1403546, "TGTAC":1111430, "TGTAG":1601775, "TGTTA":1250886, "TGTTT":2545292, "TGTTC":1634994, "TGTTG":2034184, "TGTCA":1831297, "TGTCT":2008795, "TGTCC":2008258, "TGTCG":628187, "TGTGA":2261805, "TGTGT":2371555, "TGTGC":1970376, "TGTGG":2929642, "TGCAA":1641848, "TGCAT":1310449, "TGCAC":1399832, "TGCAG":2943042, "TGCTA":1155165, "TGCTT":1906533, "TGCTC":1757147, "TGCTG":3518316, "TGCCA":2497185, "TGCCT":2827332, "TGCCC":2400319, "TGCCG":1074252, "TGCGA":426849, "TGCGT":559347, "TGCGC":1037613, "TGCGG":807800, "TGGAA":3273474, "TGGAT":2116990, "TGGAC":2085645, "TGGAG":4070688, "TGGTA":1187454, "TGGTT":1698007, "TGGTC":1586257, "TGGTG":3316500, "TGGCA":2601982, "TGGCT":2939312, "TGGCC":2838874, "TGGCG":1063125, "TGGGA":3093202, "TGGGT":1791599, "TGGGC":2607948, "TGGGG":2695155, "CAAAA":2909191, "CAAAT":1748912, "CAAAC":1651282, "CAAAG":2832939, "CAATA":1061359, "CAATT":1088502, "CAATC":889525, "CAATG":1666258, "CAACA":2359213, "CAACT":1516204, "CAACC":1564385, "CAACG":653804, "CAAGA":3219734, "CAAGT":1885509, "CAAGC":1994140, "CAAGG":2668199, "CATAA":983836, "CATAT":995091, "CATAC":742408, "CATAG":854822, "CATTA":1059082, "CATTT":2166772, "CATTC":1509034, "CATTG":2006698, "CATCA":2472938, "CATCT":2196079, "CATCC":2076497, "CATCG":911788, "CATGA":1993067, "CATGT":1789175, "CATGC":1480613, "CATGG":2321362, "CACAA":1687184, "CACAT":1519140, "CACAC":1685790, "CACAG":2636400, "CACTA":1082591, "CACTT":1671126, "CACTC":1457695, "CACTG":2534552, "CACCA":2891453, "CACCT":2313629, "CACCC":2181195, "CACCG":1070552, "CACGA":626276, "CACGT":600108, "CACGC":707894, "CACGG":809789, "CAGAA":3512910, "CAGAT":2256314, "CAGAC":1908210, "CAGAG":3294438, "CAGTA":1298178, "CAGTT":1857801, "CAGTC":1489121, "CAGTG":2918953, "CAGCA":3066949, "CAGCT":3026170, "CAGCC":3360092, "CAGCG":1010617, "CAGGA":3619498, "CAGGT":1999102, "CAGGC":2735929, "CAGGG":2495463, "CTAAA":1458818, "CTAAT":1009950, "CTAAC":781906, "CTAAG":1224128, "CTATA":827002, "CTATT":1163804, "CTATC":852438, "CTATG":1478821, "CTACA":1677892, "CTACT":1668150, "CTACC":1252540, "CTACG":563880, "CTAGA":1118537, "CTAGT":721733, "CTAGC":738713, "CTAGG":1034123, "CTTAA":1213144, "CTTAT":1048172, "CTTAC":957878, "CTTAG":926846, "CTTTA":1395537, "CTTTT":2578753, "CTTTC":1922001, "CTTTG":2575732, "CTTCA":2574744, "CTTCT":2618526, "CTTCC":2856188, "CTTCG":1012390, "CTTGA":2108647, "CTTGT":1460535, "CTTGC":1425188, "CTTGG":2153538, "CTCAA":1929634, "CTCAT":1791463, "CTCAC":1915822, "CTCAG":2871278, "CTCTA":1269321, "CTCTT":2103753, "CTCTC":2073908, "CTCTG":2957159, "CTCCA":2719178, "CTCCT":3095173, "CTCCC":3012717, "CTCCG":1208912, "CTCGA":560066, "CTCGT":613201, "CTCGC":795689, "CTCGG":1384952, "CTGAA":3019683, "CTGAT":1950751, "CTGAC":1868678, "CTGAG":3342093, "CTGTA":1987413, "CTGTT":1980939, "CTGTC":2091972, "CTGTG":3061595, "CTGCA":2674841, "CTGCT":2894509, "CTGCC":3129606, "CTGCG":1039819, "CTGGA":3905075, "CTGGT":2261350, "CTGGC":3150155, "CTGGG":3929421, "CCAAA":2529837, "CCAAT":1108562, "CCAAC":1692751, "CCAAG":2962522, "CCATA":882048, "CCATT":1777223, "CCATC":2268217, "CCATG":2366531, "CCACA":2261670, "CCACT":1903504, "CCACC":2940553, "CCACG":994334, "CCAGA":3038406, "CCAGT":2023794, "CCAGC":3592266, "CCAGG":3847315, "CCTAA":1194839, "CCTAT":1017220, "CCTAC":1239575, "CCTAG":1042434, "CCTTA":1043833, "CCTTT":2064796, "CCTTC":2572424, "CCTTG":1887028, "CCTCA":2708762, "CCTCT":2421389, "CCTCC":3654295, "CCTCG":1115587, "CCTGA":2873846, "CCTGT":2635921, "CCTGC":2927257, "CCTGG":4144805, "CCCAA":2130388, "CCCAT":1761590, "CCCAC":2112308, "CCCAG":4181246, "CCCTA":1094115, "CCCTT":1925117, "CCCTC":2553383, "CCCTG":3197455, "CCCCA":2844484, "CCCCT":2312102, "CCCCC":2287039, "CCCCG":1504510, "CCCGA":1000010, "CCCGT":731643, "CCCGC":1387306, "CCCGG":1569233, "CCGAA":744968, "CCGAT":619966, "CCGAC":663993, "CCGAG":1368528, "CCGTA":317715, "CCGTT":408166, "CCGTC":784353, "CCGTG":1057151, "CCGCA":1036701, "CCGCT":900168, "CCGCC":2011373, "CCGCG":1017183, "CCGGA":941313, "CCGGT":613642, "CCGGC":1575364, "CCGGG":1573719, "CGAAA":711466, "CGAAT":414552, "CGAAC":421074, "CGAAG":834504, "CGATA":304831, "CGATT":362335, "CGATC":567650, "CGATG":611819, "CGACA":695111, "CGACT":458189, "CGACC":646022, "CGACG":494337, "CGAGA":1157066, "CGAGT":707665, "CGAGC":896570, "CGAGG":1337088, "CGTAA":280149, "CGTAT":249027, "CGTAC":298088, "CGTAG":296407, "CGTTA":261031, "CGTTT":505270, "CGTTC":453630, "CGTTG":470447, "CGTCA":626193, "CGTCT":693855, "CGTCC":869889, "CGTCG":425638, "CGTGA":856542, "CGTGT":873928, "CGTGC":988160, "CGTGG":1354886, "CGCAA":627091, "CGCAT":473762, "CGCAC":677111, "CGCAG":890458, "CGCTA":576292, "CGCTT":942668, "CGCTC":869251, "CGCTG":985913, "CGCCA":1201166, "CGCCT":1249178, "CGCCC":1363057, "CGCCG":1233643, "CGCGA":359871, "CGCGT":535262, "CGCGC":804429, "CGCGG":919911, "CGGAA":885909, "CGGAT":487343, "CGGAC":604895, "CGGAG":1162062, "CGGTA":232018, "CGGTT":455579, "CGGTC":639796, "CGGTG":1070440, "CGGCA":961248, "CGGCT":1207223, "CGGCC":1475028, "CGGCG":1170379, "CGGGA":1443932, "CGGGT":941661, "CGGGC":1266145, "CGGGG":1593861, "GAAAA":3987091, "GAAAT":2569703, "GAAAC":2221634, "GAAAG":3033381, "GAATA":1246319, "GAATT":1828044, "GAATC":1354114, "GAATG":2007903, "GAACA":2163896, "GAACT":1872772, "GAACC":1667309, "GAACG":798729, "GAAGA":4975183, "GAAGT":2304171, "GAAGC":2845597, "GAAGG":3520164, "GATAA":1203871, "GATAT":1088662, "GATAC":769740, "GATAG":780976, "GATTA":1190266, "GATTT":1825252, "GATTC":1422835, "GATTG":1392773, "GATCA":1720150, "GATCT":1645261, "GATCC":1518550, "GATCG":1188594, "GATGA":2937959, "GATGT":1675048, "GATGC":1654467, "GATGG":2418790, "GACAA":1935803, "GACAT":1678838, "GACAC":1350355, "GACAG":2216557, "GACTA":937533, "GACTT":1688022, "GACTC":1407494, "GACTG":1743002, "GACCA":2087254, "GACCT":1933853, "GACCC":1706088, "GACCG":772867, "GACGA":853336, "GACGT":575078, "GACGC":655895, "GACGG":832278, "GAGAA":3881493, "GAGAT":2273040, "GAGAC":2272312, "GAGAG":2873619, "GAGTA":1094637, "GAGTT":1881205, "GAGTC":1526192, "GAGTG":1897973, "GAGCA":2313721, "GAGCT":2387085, "GAGCC":2455176, "GAGCG":1088843, "GAGGA":4416708, "GAGGT":2179142, "GAGGC":3284513, "GAGGG":2165196, "GTAAA":1316781, "GTAAT":1013874, "GTAAC":721189, "GTAAG":771491, "GTATA":725977, "GTATT":1207969, "GTATC":736800, "GTATG":1000199, "GTACA":1090320, "GTACT":955296, "GTACC":906748, "GTACG":337091, "GTAGA":1197222, "GTAGT":1160880, "GTAGC":876439, "GTAGG":747939, "GTTAA":970238, "GTTAT":888133, "GTTAC":848068, "GTTAG":692958, "GTTTA":1189515, "GTTTT":2301332, "GTTTC":1632246, "GTTTG":1940716, "GTTCA":1559143, "GTTCT":1898008, "GTTCC":1527101, "GTTCG":698111, "GTTGA":1469385, "GTTGT":1246842, "GTTGC":1272246, "GTTGG":1684363, "GTCAA":1273428, "GTCAT":1359427, "GTCAC":1413409, "GTCAG":1598307, "GTCTA":713070, "GTCTT":1556173, "GTCTC":1733722, "GTCTG":1765505, "GTCCA":1606132, "GTCCT":1684981, "GTCCC":1978371, "GTCCG":761517, "GTCGA":421382, "GTCGT":566992, "GTCGC":534708, "GTCGG":712156, "GTGAA":2444118, "GTGAT":1799791, "GTGAC":1669874, "GTGAG":1977002, "GTGTA":1011653, "GTGTT":1678816, "GTGTC":1746168, "GTGTG":2483261, "GTGCA":1578041, "GTGCT":1931960, "GTGCC":2052873, "GTGCG":1050613, "GTGGA":2883215, "GTGGT":2172157, "GTGGC":2613270, "GTGGG":2584648, "GCAAA":2007039, "GCAAT":1059541, "GCAAC":1319124, "GCAAG":2137111, "GCATA":682882, "GCATT":1341947, "GCATC":1601243, "GCATG":1531288, "GCACA":1603509, "GCACT":1552493, "GCACC":1638900, "GCACG":621611, "GCAGA":2809618, "GCAGT":1996895, "GCAGC":2600889, "GCAGG":2596582, "GCTAA":1029018, "GCTAT":1149364, "GCTAC":1381288, "GCTAG":837427, "GCTTA":838157, "GCTTT":1843665, "GCTTC":1968162, "GCTTG":1736919, "GCTCA":2037809, "GCTCT":1875942, "GCTCC":2093181, "GCTCG":735760, "GCTGA":3139069, "GCTGT":2424708, "GCTGC":2886781, "GCTGG":4002056, "GCCAA":2289615, "GCCAT":1999250, "GCCAC":2206925, "GCCAG":2865327, "GCCTA":1016717, "GCCTT":1923546, "GCCTC":2655869, "GCCTG":3276951, "GCCCA":2590485, "GCCCT":2326853, "GCCCC":2423620, "GCCCG":1389321, "GCCGA":1152614, "GCCGT":734468, "GCCGC":1676411, "GCCGG":1387970, "GCGAA":483504, "GCGAT":414183, "GCGAC":565924, "GCGAG":873715, "GCGTA":209443, "GCGTT":407098, "GCGTC":713505, "GCGTG":1183922, "GCGCA":725313, "GCGCT":958335, "GCGCC":1252327, "GCGCG":948750, "GCGGA":843263, "GCGGT":752376, "GCGGC":1490550, "GCGGG":1537881, "GGAAA":3359695, "GGAAT":1775611, "GGAAC":1778583, "GGAAG":3834462, "GGATA":987002, "GGATT":1717024, "GGATC":1700142, "GGATG":2241318, "GGACA":2105519, "GGACT":1740582, "GGACC":1853331, "GGACG":892594, "GGAGA":3765270, "GGAGT":2252366, "GGAGC":2713248, "GGAGG":4643190, "GGTAA":816600, "GGTAT":851440, "GGTAC":716109, "GGTAG":830994, "GGTTA":752711, "GGTTT":1624993, "GGTTC":1346933, "GGTTG":1496015, "GGTCA":1546165, "GGTCT":1495081, "GGTCC":1264838, "GGTCG":638437, "GGTGA":2281119, "GGTGT":2035045, "GGTGC":1760771, "GGTGG":3404359, "GGCAA":1972725, "GGCAT":1833618, "GGCAC":1581191, "GGCAG":2829914, "GGCTA":1157956, "GGCTT":1773208, "GGCTC":2139303, "GGCTG":4276635, "GGCCA":2748077, "GGCCT":2279235, "GGCCC":2559797, "GGCCG":1616144, "GGCGA":773941, "GGCGT":867915, "GGCGC":1230943, "GGCGG":1869907, "GGGAA":2611832, "GGGAT":1591765, "GGGAC":1786999, "GGGAG":3389944, "GGGTA":773966, "GGGTT":1482931, "GGGTC":1313015, "GGGTG":2278117, "GGGCA":2104850, "GGGCT":2234242, "GGGCC":2427537, "GGGCG":1243101, "GGGGA":2484936, "GGGGT":1578928, "GGGGC":2148809, "GGGGG":6929195 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46078_1_TK_RNA_2_D17_HSC_T4_A61_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/46078_1_TK_RNA_2_D17_HSC_T4_A61_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46078_1_TK_RNA_2_D17_HSC_T4_A61_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/46078_1_TK_RNA_2_D17_HSC_T4_A61_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46078_1_TK_RNA_2_D17_HSC_T4_A61.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/46078_1_TK_RNA_2_D17_HSC_T4_A61.fastp.json " }