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"GTTTG":144686, "GTTCA":157673, "GTTCT":191369, "GTTCC":119505, "GTTCG":31868, "GTTGA":113518, "GTTGT":126888, "GTTGC":106893, "GTTGG":135752, "GTCAA":104726, "GTCAT":122926, "GTCAC":163137, "GTCAG":146211, "GTCTA":66637, "GTCTT":186478, "GTCTC":166605, "GTCTG":180638, "GTCCA":147089, "GTCCT":145962, "GTCCC":157692, "GTCCG":44761, "GTCGA":29713, "GTCGT":41152, "GTCGC":36762, "GTCGG":52982, "GTGAA":139142, "GTGAT":125452, "GTGAC":95189, "GTGAG":146902, "GTGTA":92294, "GTGTT":122783, "GTGTC":104956, "GTGTG":154079, "GTGCA":138389, "GTGCT":128595, "GTGCC":111108, "GTGCG":41157, "GTGGA":140613, "GTGGT":200773, "GTGGC":197432, "GTGGG":190284, "GCAAA":141927, "GCAAT":100145, "GCAAC":112609, "GCAAG":106599, "GCATA":76551, "GCATT":115418, "GCATC":112941, "GCATG":113665, "GCACA":159085, "GCACT":118445, "GCACC":115191, "GCACG":90515, "GCAGA":174654, "GCAGT":162332, "GCAGC":188355, "GCAGG":225250, "GCTAA":79395, "GCTAT":109545, "GCTAC":73283, "GCTAG":61795, "GCTTA":69920, "GCTTT":166639, 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"GGTTC":136777, "GGTTG":125796, "GGTCA":159660, "GGTCT":150168, "GGTCC":157663, "GGTCG":49819, "GGTGA":163067, "GGTGT":135351, "GGTGC":117390, "GGTGG":287243, "GGCAA":165951, "GGCAT":142299, "GGCAC":140810, "GGCAG":264612, "GGCTA":109793, "GGCTT":157104, "GGCTC":156745, "GGCTG":286114, "GGCCA":189540, "GGCCT":168500, "GGCCC":162072, "GGCCG":139022, "GGCGA":71878, "GGCGT":62349, "GGCGC":131747, "GGCGG":179176, "GGGAA":200728, "GGGAT":126834, "GGGAC":130256, "GGGAG":315648, "GGGTA":92055, "GGGTT":138008, "GGGTC":127736, "GGGTG":191879, "GGGCA":206245, "GGGCT":175051, "GGGCC":192712, "GGGCG":126882, "GGGGA":239362, "GGGGT":183031, "GGGGC":213080, "GGGGG":272262 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 2455596, "total_bases": 144880164, "q20_bases": 141011679, "q30_bases": 136728996, "total_cycles": 59, "quality_curves": { 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"mean":[33.1266,33.2581,33.0978,33.142,33.2172,33.1822,32.9755,33.2268,33.2665,33.2119,33.2194,33.2195,33.2313,33.2299,33.2255,33.2266,33.2039,33.2149,33.2201,33.2069,33.2021,33.2104,33.2135,33.2151,33.2039,33.2648,33.2533,33.2381,33.231,33.2103,33.2088,33.1998,33.1775,33.168,33.1596,33.1424,33.1399,33.1253,33.1167,33.1189,33.1194,33.125,33.1343,33.1351,33.1496,33.1588,33.161,33.1653,33.17,33.1753,33.1763,33.1685,33.1646,33.1555,33.1474,33.1294,33.1372,33.1236,32.9163] }, "content_curves": { 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"CGTTG":35561, "CGTCA":41387, "CGTCT":53008, "CGTCC":77397, "CGTCG":38695, "CGTGA":60483, "CGTGT":66206, "CGTGC":95061, "CGTGG":105917, "CGCAA":40997, "CGCAT":34184, "CGCAC":56652, "CGCAG":66953, "CGCTA":48192, "CGCTT":100406, "CGCTC":74597, "CGCTG":73873, "CGCCA":91413, "CGCCT":103844, "CGCCC":124615, "CGCCG":122328, "CGCGA":33264, "CGCGT":64850, "CGCGC":79368, "CGCGG":96070, "CGGAA":62935, "CGGAT":34426, "CGGAC":49453, "CGGAG":92713, "CGGTA":18208, "CGGTT":35429, "CGGTC":54225, "CGGTG":106222, "CGGCA":70586, "CGGCT":99474, "CGGCC":135156, "CGGCG":119431, "CGGGA":137759, "CGGGT":87269, "CGGGC":113357, "CGGGG":143940, "GAAAA":294832, "GAAAT":190247, "GAAAC":161603, "GAAAG":214976, "GAATA":99158, "GAATT":140818, "GAATC":99623, "GAATG":145476, "GAACA":153458, "GAACT":137170, "GAACC":120022, "GAACG":56712, "GAAGA":324017, "GAAGT":159968, "GAAGC":193422, "GAAGG":240549, "GATAA":93326, "GATAT":81863, "GATAC":58094, "GATAG":62294, "GATTA":97642, "GATTT":145519, "GATTC":110662, "GATTG":101592, "GATCA":122911, "GATCT":130514, "GATCC":112521, "GATCG":124237, "GATGA":192436, "GATGT":117787, "GATGC":112867, "GATGG":169040, "GACAA":132025, "GACAT":121039, "GACAC":96278, "GACAG":161088, "GACTA":71118, "GACTT":124510, "GACTC":104117, "GACTG":125064, "GACCA":148126, "GACCT":142108, "GACCC":128460, "GACCG":60403, "GACGA":59215, "GACGT":46072, "GACGC":51784, "GACGG":66208, "GAGAA":267818, "GAGAT":160999, "GAGAC":171098, "GAGAG":211788, "GAGTA":83538, "GAGTT":151200, "GAGTC":119285, "GAGTG":145916, "GAGCA":160773, "GAGCT":172047, "GAGCC":196142, "GAGCG":86287, "GAGGA":332196, "GAGGT":175869, "GAGGC":284434, "GAGGG":169619, "GTAAA":107566, "GTAAT":87363, "GTAAC":58404, "GTAAG":61701, "GTATA":62965, "GTATT":103548, "GTATC":55878, "GTATG":75961, "GTACA":80946, "GTACT":73004, "GTACC":66922, "GTACG":22457, "GTAGA":90921, "GTAGT":121263, "GTAGC":69641, "GTAGG":60021, "GTTAA":81581, "GTTAT":72883, "GTTAC":63280, "GTTAG":57384, "GTTTA":99891, "GTTTT":194812, "GTTTC":130779, "GTTTG":146281, "GTTCA":117936, "GTTCT":155944, "GTTCC":114382, "GTTCG":59215, "GTTGA":114564, "GTTGT":99063, "GTTGC":96782, "GTTGG":129011, "GTCAA":91334, "GTCAT":99098, "GTCAC":105887, "GTCAG":117231, "GTCTA":56119, "GTCTT":124100, "GTCTC":139571, "GTCTG":133955, "GTCCA":118607, "GTCCT":129036, "GTCCC":182863, "GTCCG":66662, "GTCGA":28494, "GTCGT":47136, "GTCGC":47294, "GTCGG":63336, "GTGAA":177212, "GTGAT":136963, "GTGAC":123406, "GTGAG":153246, "GTGTA":78779, "GTGTT":129690, "GTGTC":141916, "GTGTG":193928, "GTGCA":119061, "GTGCT":148037, "GTGCC":173805, "GTGCG":90723, "GTGGA":197829, "GTGGT":165258, "GTGGC":213095, "GTGGG":224420, "GCAAA":143421, "GCAAT":82186, "GCAAC":96055, "GCAAG":142973, "GCATA":55374, "GCATT":103267, "GCATC":113037, "GCATG":114314, "GCACA":118074, "GCACT":119522, "GCACC":116464, "GCACG":46161, "GCAGA":197721, "GCAGT":151928, "GCAGC":188909, "GCAGG":194112, "GCTAA":79938, "GCTAT":92513, "GCTAC":124944, "GCTAG":67833, "GCTTA":66167, "GCTTT":143828, "GCTTC":145482, "GCTTG":159107, "GCTCA":153551, "GCTCT":146472, "GCTCC":161073, "GCTCG":58996, "GCTGA":251196, "GCTGT":184151, "GCTGC":209875, "GCTGG":313085, "GCCAA":156827, "GCCAT":144077, "GCCAC":167878, "GCCAG":215676, "GCCTA":80429, "GCCTT":145144, "GCCTC":216266, "GCCTG":268242, "GCCCA":197182, "GCCCT":172837, "GCCCC":198982, "GCCCG":126277, "GCCGA":93894, "GCCGT":57510, "GCCGC":153643, "GCCGG":126531, "GCGAA":37688, "GCGAT":34011, "GCGAC":48848, "GCGAG":70230, "GCGTA":16260, "GCGTT":30427, "GCGTC":57925, "GCGTG":114474, "GCGCA":54588, "GCGCT":80425, "GCGCC":110950, "GCGCG":105309, "GCGGA":67921, "GCGGT":81005, "GCGGC":136065, "GCGGG":147452, "GGAAA":241223, "GGAAT":130196, "GGAAC":126102, "GGAAG":266854, "GGATA":73294, "GGATT":132066, "GGATC":155415, "GGATG":151900, "GGACA":143699, "GGACT":125140, "GGACC":137279, "GGACG":68161, "GGAGA":259074, "GGAGT":178724, "GGAGC":202713, "GGAGG":396644, "GGTAA":67270, "GGTAT":64398, "GGTAC":53268, "GGTAG":64422, "GGTTA":59382, "GGTTT":131766, "GGTTC":106545, "GGTTG":123222, "GGTCA":111592, "GGTCT":119451, "GGTCC":100184, "GGTCG":54901, "GGTGA":169043, "GGTGT":162962, "GGTGC":135706, "GGTGG":293448, "GGCAA":139066, "GGCAT":132545, "GGCAC":115352, "GGCAG":208218, "GGCTA":88494, "GGCTT":133026, "GGCTC":164885, "GGCTG":372981, "GGCCA":196337, "GGCCT":171406, "GGCCC":208421, "GGCCG":142053, "GGCGA":63510, "GGCGT":72276, "GGCGC":124504, "GGCGG":178145, "GGGAA":191501, "GGGAT":122859, "GGGAC":136231, "GGGAG":306107, "GGGTA":58476, "GGGTT":130759, "GGGTC":105105, "GGGTG":186250, "GGGCA":152458, "GGGCT":175142, "GGGCC":197144, "GGGCG":116971, "GGGGA":193256, "GGGGT":131641, "GGGGC":180336, "GGGGG":1704794 }, "overrepresented_sequences": { } }, "command": "fastp -w 2 --in1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02_R1.fastq.gz --in2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02_R2.fastq.gz --out1 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02_R1_trimmed.fastq.gz --out2 /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/fastq_trimmed/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02_R2_trimmed.fastq.gz -h /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02.fastp.html -j /scratch/tvdkreeke/GHE_RNAseq/GHE_exp2/results/qc/trimming/45942_Exp215_GHEtest_6_S2_IPSC_noRibo_A02.fastp.json " }